EsuBft2071_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2071_3a-0001
Unique NameEsuBft2071_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:3754..6557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2711.XP_006487226.1
ProteomeIdEsuBft2071_3
Protein domainsIPR018289
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl33090|Viridiplantae
Length92
Hectar predicted targeting categoryother localisation
Evalue3.95e-16
EggNOG OGs28NP1@1|root,2QV8R@2759|Eukaryota,37R4W@33090|Viridiplantae
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_3aEsuBft2071_3aEctocarpus subulatus male Bft15bgeneScaffold_195 3754..6557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_3a-0001EsuBft2071_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 3956..6557 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_3a-0001-exonagat-exon-54182Ectocarpus subulatus male Bft15bexonScaffold_195 3754..4105 -
EsuBft2071_3a-0001-exonagat-exon-54183Ectocarpus subulatus male Bft15bexonScaffold_195 4630..4857 -
EsuBft2071_3a-0001-exonEsuBft2071_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 5911..6228 -
EsuBft2071_3a-0001-exonagat-exon-54181Ectocarpus subulatus male Bft15bexonScaffold_195 6531..6557 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_3a-0001-exonagat-three_prime_utr-8035Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 3754..3955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_3a-0001-cdsEsuBft2071_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 3956..4105 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2071_3a-0001 ID=EsuBft2071_3a-0001|Name=EsuBft2071_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=925bp|location=Sequence derived from alignment at Scaffold_195:3754..6557- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATCGGCGTCTTCTTGTTGGTGGTCGTGGGAATGGATGGGGGACA
CCTCAAGGGAGAGTGGAACGGAGTGATGCTGACGCTGACGTGCAAGGACG
CCAACAACGAGAACAGCCACGTCGCGACAGTGATCGGACCCAAGGAGGAC
ACCTCCCTCCACAAGACTTTGCTGCGCAACTGGAAGAACCCGAAGATGAG
GGACCTGCTGGAAGACTCGAAGACAACCTTCTTCACGGACCAGCACAAGG
GGGCGACCTGTGCGCTGCGGGGCGAGGCCCCGCTGGCGCAGCACCGGTAC
TGCTTGAGGCACCTCCTCCTGAACTTAGAGGAGGAGATTGGCAGCAATGC
CAACTCATGGGTATTCTTCGTCGCCAGAGCTACTACGAAGAAACAATTCG
AGGACATCCTGAAGCAGCACGTTCTACCGAGCAAGCCTCGCGCCTATGTC
CAGATCATTGACGATTGGAAGAGGCATGAGTGGGCTCACTCTGGTGCCCC
CCCCGACACCGCACTCCAAGACGTTGTCACGAACAACCTTTCGGAGCAAA
CCAATTCGGCGGTTGGTGTCGAGGCTAGGAAACTACCGCCATTTGAGCTG
ATGAGGAGCATCCTCGCTGATACCGCCAAGAAGTTCGCCCACCGTTCCAC
CCTCGGCAATGGCACATGGACACCCTATGCTGCCGCGACGTTCGAAGATC
AGAGGAAAAAGCCCGCCGGGTAAGTGACAAGAGTGGAGAATGAACGGCCG
CGTTTGGGTTTTTCTGTGTATGGGTATATCCTCTTGTGGTTTCGAAGAGA
CAACCTAATTCCTGGAGGACTCTCCTGTACTTGCACGGAGGGGTGGTGGG
TTGCCAACGGGTGGGTGTTTCATGACATGTTTCGAGGTGCACGCACGTCG
CCGAGATTCACATGTACTCACATGC
back to top

protein sequence of EsuBft2071_3a-0001

>EsuBft2071_3 ID=EsuBft2071_3|Name=EsuBft2071_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=240bp
MEIGVFLLVVVGMDGGHLKGEWNGVMLTLTCKDANNENSHVATVIGPKED
TSLHKTLLRNWKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRY
CLRHLLLNLEEEIGSNANSWVFFVARATTKKQFEDILKQHVLPSKPRAYV
QIIDDWKRHEWAHSGAPPDTALQDVVTNNLSEQTNSAVGVEARKLPPFEL
MRSILADTAKKFAHRSTLGNGTWTPYAAATFEDQRKKPAG
back to top

mRNA from alignment at Scaffold_195:3754..6557-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2071_3a-0001 ID=EsuBft2071_3a-0001|Name=EsuBft2071_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2804bp|location=Sequence derived from alignment at Scaffold_195:3754..6557- (Ectocarpus subulatus male Bft15b)
ATGGAGATCGGCGTCTTCTTGTTGGTGGTTTATCTCGAAGACCTAAGTTG
TTTCCTTTGAGGCCGGGTGAGACGGGTCGATGCCCCTACGCCACCGCTCA
AGACTTTTGTATCTCCCTGTTCCCCTGCGCAAACACGTTCCCATTCCTTC
GAAAGAGATCGACGCGAAGATCTGCGAAGGTCGTCCGTCGTGTTGAAACC
TGTATGTTGCCCCTGCCTTTCTTGCAGAGCGACGTTAAGTATGCATGTCG
CCCTTAGCATTGATTTTGCGTTTTGACGAATTGCCTTGACCCTTTCCCTC
CCTCTTTGCTCTATAGAAAACGTCCTCAGGTCGTGGGAATGGATGGGGGA
CACCTCAAGGGAGAGTGGAACGGAGTGATGCTGACGCTGACGTGCAAGGA
CGCCAACAACGAGAACAGCCACGTCGCGACAGTGATCGGACCCAAGGAGG
ACACCTCCCTCCACAAGACTTTGCTGCGCAACTGGAAGAACCCGAAGATG
AGGGACCTGCTGGAAGACTCGAAGACAACCTTCTTCACGGACCAGCACAA
GGGGGCGACCTGTGCGCTGCGGGGCGAGGCCCCGCTGGCGCAGCACCGGT
ACTGCTTGAGGCACCTCCTCCTGAACTTAGAGGAGGAGATTGGCAGCGTG
AGTAAAAGTATGATGTTATGTGCTTGAGATGTTGTTGACGAGTGGGAGGC
TGGGATGTGTGGTAAGAAGCGAGGGGTGGGTGTCTGTGATGTACATTATC
AAGCAGTTCGTAGGTGTCGTCAGATGTGAGATTTGGTGTTGTCTTGGTTA
ATCCCTTGCCTTCTCAAAAACCCGGTATGAGTTGTTGGGGTTTGGGGCGG
TGTTCTTGAAGCGCTCTTCTGCTGGAATATCTGAACCCTACGGATCGACA
GCAGTCACTGTGAGAACGAGGTGGTCGGGAAAAAAAGGTACTCAGGCGCC
CCCCCCCCATTTCTACGCCATGTCGTAAACACACGCGCTTGTTCAGCTCA
CCATGACATCGTCACCTGTATTGCCGCCAGGAGCGTACCACGAGATGCGC
CAACCGAATCTATGCCGCGTTTATATCATGTGCCAGACACGATTGTCCCA
GCTGTGCAGCCTTCGATATGTGTAGGGTGAGCAAGTCCATGGCAAGTCCA
TGGCAATCATTCAAATTTTCAGGCACGCTTACACACCAAATTCTCCTCGA
CTAGCTGCACCCAAGTAGCAAGTTGTTCACTCGGGAATAAACCCCGCGAG
ATGCGGCGCGACGCGTTTGTTGGGGTGTGAGTACCGCCTTTAGACGTCCA
TGGCAGAGGCCTCCAGCTTCGACAAGTCCACGTCACGGTAACTTCATTTT
GGAGAAGTAACCCAGAGGAAATGTCAACAACGCCGAAGAAACAGATTGAG
CCCCATCGACCAATCTTTTTGGTACTGCTCAGCCAGTCCTTACTCGTGTG
TTTGCGGGGCTTGTGTTAGTTCATTGGCTTCGTTGTTTTGTGCTAGCCGT
GGACTTGACGTTTGGTATTGCTGCATTGGGTGTCGGCAAGTACAGGCGCC
ACTGCTGTTGATGCACTTGCCGATGCGCTGCGACTTCCTTGGGTGCGTTA
CTGCTCTATTTTGTTGTGTTTGAGGAGCCCCTCTTTGTTTTGTCCCTTCT
CCCTCTTTTGCCCGTTCCCCTCCTTCTCATGTTTTAACTTGTCTGCCCAG
AATGCCAACTCATGGGTATTCTTCGTCGCCAGAGCTACTACGAAGAAACA
ATTCGAGGACATCCTGAAGCAGCACGTTCTACCGAGCAAGCCTCGCGCCT
ATGTCCAGATCATTGACGATTGGAAGAGGCATGAGTGGGCTCACTCTGGT
GCCCCCCCCGACACCGCACTCCAAGACGTTGTCACGAACAACCTTTCGGA
GCAAACCAATTCGGCGGTTGGTGTCGAGGTAAGGGTGCTCGTCGCACGAG
GTACTTCTTATGTGGCTGCCGGGATCGGTGTTGTAAGTACGAAAGTACCA
ATATGCCAGGACGATGTTCGTTCCGTTTGTTGTGTACCATGTATGATCGG
TAGCAGTATTGATCGAACAACGAGTCGCGAAGACTCGAACACGTTGCTGT
AGATTCCATGTCAGGGACACCCACCCACTCGTTGGAAGGCAAGCGCACCT
TGCGTAGCAGTGAAGAGACCGATAGGAGTTGTTTTTTTAGGAAAGAACCT
GAATACAAGGCTTTTTCGCTGACGTGAATGGACACAAATTTACACGTGCG
CCTCCCACGACCCCTTCACCGCACCCCCCGCGCTCCCGCGCATTATTGCT
CGAGTTGTTGGTGCACCCCTACCCTGTTTTGGTGATTCTCTTGTACCAAT
GCGACGCCCCGTGTCGACCACAGCAAGTAAGCGAGCATGGTTGGCTACGT
TTCAAACGTAGCTTGATCATGTTGCAACTTATTCGGCGATGACTTCTCAC
AGGCTAGGAAACTACCGCCATTTGAGCTGATGAGGAGCATCCTCGCTGAT
ACCGCCAAGAAGTTCGCCCACCGTTCCACCCTCGGCAATGGCACATGGAC
ACCCTATGCTGCCGCGACGTTCGAAGATCAGAGGAAAAAGCCCGCCGGGT
AAGTGACAAGAGTGGAGAATGAACGGCCGCGTTTGGGTTTTTCTGTGTAT
GGGTATATCCTCTTGTGGTTTCGAAGAGACAACCTAATTCCTGGAGGACT
CTCCTGTACTTGCACGGAGGGGTGGTGGGTTGCCAACGGGTGGGTGTTTC
ATGACATGTTTCGAGGTGCACGCACGTCGCCGAGATTCACATGTACTCAC
ATGC
back to top

Coding sequence (CDS) from alignment at Scaffold_195:3754..6557-

>EsuBft2071_3a-0001 ID=EsuBft2071_3a-0001|Name=EsuBft2071_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=723bp|location=Sequence derived from alignment at Scaffold_195:3754..6557- (Ectocarpus subulatus male Bft15b)
ATGGAGATCGGCGTCTTCTTGTTGGTGGTCGTGGGAATGGATGGGGGACA
CCTCAAGGGAGAGTGGAACGGAGTGATGCTGACGCTGACGTGCAAGGACG
CCAACAACGAGAACAGCCACGTCGCGACAGTGATCGGACCCAAGGAGGAC
ACCTCCCTCCACAAGACTTTGCTGCGCAACTGGAAGAACCCGAAGATGAG
GGACCTGCTGGAAGACTCGAAGACAACCTTCTTCACGGACCAGCACAAGG
GGGCGACCTGTGCGCTGCGGGGCGAGGCCCCGCTGGCGCAGCACCGGTAC
TGCTTGAGGCACCTCCTCCTGAACTTAGAGGAGGAGATTGGCAGCAATGC
CAACTCATGGGTATTCTTCGTCGCCAGAGCTACTACGAAGAAACAATTCG
AGGACATCCTGAAGCAGCACGTTCTACCGAGCAAGCCTCGCGCCTATGTC
CAGATCATTGACGATTGGAAGAGGCATGAGTGGGCTCACTCTGGTGCCCC
CCCCGACACCGCACTCCAAGACGTTGTCACGAACAACCTTTCGGAGCAAA
CCAATTCGGCGGTTGGTGTCGAGGCTAGGAAACTACCGCCATTTGAGCTG
ATGAGGAGCATCCTCGCTGATACCGCCAAGAAGTTCGCCCACCGTTCCAC
CCTCGGCAATGGCACATGGACACCCTATGCTGCCGCGACGTTCGAAGATC
AGAGGAAAAAGCCCGCCGGGTAA
back to top