EsuBft2071_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2071_2a-0001
Unique NameEsuBft2071_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:2064..2477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2071_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length41
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_2aEsuBft2071_2aEctocarpus subulatus male Bft15bgeneScaffold_195 2064..2477 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_2a-0001-exonEsuBft2071_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 2064..2477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_2a-0001-cdsEsuBft2071_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 2064..2477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2071_2a-0001EsuBft2071_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 2064..2477 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2071_2a-0001 ID=EsuBft2071_2a-0001|Name=EsuBft2071_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=414bp|location=Sequence derived from alignment at Scaffold_195:2064..2477- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCTGATGCACCCGGCCTATGGCCTTGTCATGACCCTGATGCACCC
GGCCTATGGCCTACAATACCACCGCCAGACCTACGGCGACGACGCGTACC
AGGTCATGCTGCCTGTGCCGTCCACGCTGGAGGAAGATGACACGCTGCTA
CCTCCTGTCCCAGTGGATGGTCAGGCCGGCGCTCCCAAGAAACTCGGGCC
GAACAAGTTCAAGAGGATCGCGGGGCGCGGGGACAAGTACGCTTCGTCGT
CGTTCAACACGCGAGTTTCTGATTTCGGACCGGCTGCATCCGGAACCACG
GCGGCTCCCTCTCTGTCGCAGGGGGGTGCCACGGCGGCTCCCTCTTCGTC
ACAGGGGGGGGGTGCGGGCGGATGGGTCACGGTCGGGGGGATGGTGATCA
ATTTGACACGCTGA
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protein sequence of EsuBft2071_2a-0001

>EsuBft2071_2 ID=EsuBft2071_2|Name=EsuBft2071_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=137bp
MTLMHPAYGLVMTLMHPAYGLQYHRQTYGDDAYQVMLPVPSTLEEDDTLL
PPVPVDGQAGAPKKLGPNKFKRIAGRGDKYASSSFNTRVSDFGPAASGTT
AAPSLSQGGATAAPSSSQGGGAGGWVTVGGMVINLTR
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mRNA from alignment at Scaffold_195:2064..2477-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2071_2a-0001 ID=EsuBft2071_2a-0001|Name=EsuBft2071_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=414bp|location=Sequence derived from alignment at Scaffold_195:2064..2477- (Ectocarpus subulatus male Bft15b)
ATGACCCTGATGCACCCGGCCTATGGCCTTGTCATGACCCTGATGCACCC
GGCCTATGGCCTACAATACCACCGCCAGACCTACGGCGACGACGCGTACC
AGGTCATGCTGCCTGTGCCGTCCACGCTGGAGGAAGATGACACGCTGCTA
CCTCCTGTCCCAGTGGATGGTCAGGCCGGCGCTCCCAAGAAACTCGGGCC
GAACAAGTTCAAGAGGATCGCGGGGCGCGGGGACAAGTACGCTTCGTCGT
CGTTCAACACGCGAGTTTCTGATTTCGGACCGGCTGCATCCGGAACCACG
GCGGCTCCCTCTCTGTCGCAGGGGGGTGCCACGGCGGCTCCCTCTTCGTC
ACAGGGGGGGGGTGCGGGCGGATGGGTCACGGTCGGGGGGATGGTGATCA
ATTTGACACGCTGA
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Coding sequence (CDS) from alignment at Scaffold_195:2064..2477-

>EsuBft2071_2a-0001 ID=EsuBft2071_2a-0001|Name=EsuBft2071_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=414bp|location=Sequence derived from alignment at Scaffold_195:2064..2477- (Ectocarpus subulatus male Bft15b)
ATGACCCTGATGCACCCGGCCTATGGCCTTGTCATGACCCTGATGCACCC
GGCCTATGGCCTACAATACCACCGCCAGACCTACGGCGACGACGCGTACC
AGGTCATGCTGCCTGTGCCGTCCACGCTGGAGGAAGATGACACGCTGCTA
CCTCCTGTCCCAGTGGATGGTCAGGCCGGCGCTCCCAAGAAACTCGGGCC
GAACAAGTTCAAGAGGATCGCGGGGCGCGGGGACAAGTACGCTTCGTCGT
CGTTCAACACGCGAGTTTCTGATTTCGGACCGGCTGCATCCGGAACCACG
GCGGCTCCCTCTCTGTCGCAGGGGGGTGCCACGGCGGCTCCCTCTTCGTC
ACAGGGGGGGGGTGCGGGCGGATGGGTCACGGTCGGGGGGATGGTGATCA
ATTTGACACGCTGA
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