EsuBft2064_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2064_6a-0001
Unique Name	EsuBft2064_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_347	contig	Scaffold_347:26583..29831 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2064_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	268
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2064_6a	EsuBft2064_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_347 26583..29831 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2064_6a-0001	EsuBft2064_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_347 26648..27022 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2064_6a-0001-exon	agat-exon-51364	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 26583..28054 +
EsuBft2064_6a-0001-exon	EsuBft2064_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 28616..29831 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2064_6a-0001-exon	agat-five_prime_utr-5184	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_347 26583..26647 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2064_6a-0001-cds	EsuBft2064_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_347 26648..27022 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2064_6a-0001-exon	agat-three_prime_utr-7982	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 27023..28054 +
EsuBft2064_6a-0001-exon	agat-three_prime_utr-7983	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 28616..29831 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_347:26583..29831+
coding sequence from alignment at Scaffold_347:26583..29831+

spliced messenger RNA

>EsuBft2064_6a-0001 ID=EsuBft2064_6a-0001|Name=EsuBft2064_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2688bp|location=Sequence derived from alignment at Scaffold_347:26583..29831+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGGCAGCCGTAATTACAGGCTGGAAGTCGGCAATAGTCGTTGGC
ACTACATCTACGTCGATGGGCGGGAATGCACAATGCGGAAGCACTACACC
GGAAGTGGCGGATGGGAAGCTCGAAGATGCACTCGCAGACCAAGGTACAA
CACCGGCAGTGGCACCACCGGCGGACTGGAAGCTCGGACTCGCACTCGAA
CTCGAAGGTACAACACCGGCAGCGACTCCACCGGCGGACTGGAAGCTCGT
ACTCGCAGGTGTGCCCGCTCCTGTGTTTGGTGGGAAAGGGGGGTTCGCAA
CAACAAGGCCTGTCCCAACGCTAGGCGAGGGAGCTTGGGGAGACACACGA
GGGAGGGCATCGGGACCGAGGGTCACAGCACTACCGGTATACGTGGGAGG
CAAGCGAGTGGCCCAGCGTGAACATCCTACATCGGAGTAGGCAAAGGAAA
GCTGGCCATTGAAGAGATGCACGCCATTCTCATCCAACATAATTCTCTGC
CTACGCTGCGTATGGTGGAGAGAAAACAGATTGAATGTGATGCCGGGGAC
TACGTACACGTCCGACATCTGCACGCAAAAATCGGTCTCGCCCGAAGGGC
CGGGCATGTGAAATGCCATGTTGATGCTACCAACACATTGCACGCGCAGA
TAGGCACCATTCCCTACTTGGATGAACTCTTTTCCTGCTGGGATTGGCTT
CATGTCGAACATGTTTTCGCTACTGCTGACAAACGTGTTGCTCGCGCCTC
TGTCGGCCCAAAATTGCTCTCTACCAATCTGCGAAGGGCGACTCTGAACA
GACAAAGCGAAACCACTACCATTCTCACGCGCTACCACATTTGGAAAGAT
CTCGCCTTGTGACACAAAACGTGTCTTGAGGGAGTGAAGATGGCCAGGGG
ATCCGGCTGCGTCGGGAGGAGGCGAATGGTACGGGGCATGGGTCGAGTGC
TGCTGCTGCTGCTGGAACGACGGCGGTGGCGGAGGCTGCGGCGGTGGCTG
CTGCTGCTGCTGGTAGTACGGTGTCGGAGGCGGGTAGTACGGCTGCTGCT
GGTAGCTGTAGTCTTGCGACGGTTGCTGATACTGTGGCTGCTGCTCCCAC
CCCCCATACTCGGTGCCATACGCGGGCCCCCCATGGGGCGCAGCACTATA
CGTTTGACTCACATTTGCATGCCCGTGCGGGGGCCGCCACTGCTGCTGCG
GTGTACGGGGGGGAGCTGGATGTCCGTGATGCTGCTGTCCTCCGTAGCCG
CCGTGAGGTCCGTGCTGGGGCCCACCCCCCCAGCCCCCCCCACTGCGGCT
CGGCTGCTGTGGCGGCGGTCCCCGAGGTTGCTGTTGCTGCTGAGGCCGCT
GCTGGTGTGGGGGCTGTTGCTGTTGTTGGGGCTGAGGCTGTTGCTGAGGC
TGTTGCTGAGGCTGCTGCTGCTTGGGCTGCTGCTTCTTCCGTTGGCGACG
CTGGGTGTAGCACTCGCTGTTGGTGATTGTCGTGATAATCAAATTCCACG
CCGTGATCGCCTTGTCTACCGTCTCAGGCGAGTGCATCCTACGTAAGTCC
TCCATGTCTACTCCTTCTAGCCCAACTGGAATTCTGCGGTCACTCAATAC
CACTTCCCGGACTCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCCCCCCACGCTATGCTACGAGTATATCGAATAGATCCGGCTTGTACGA
TCCACGATCAGTGGATCGTCGCCGCAATGGATCCGAACCGACTTCAACAA
GCTCTCACCTCTACCAGCCTTTTCACTGCTACCTCTTATGTTTCTCTTCT
CCAAGATATCTCTCCACGCTTCTCCACGCGGATTTTCCTCTCTCGGTGCC
TGAACTCTTCTTCCTCGGAAACCTTCCAGGCCGACTTTTTCGTACAATCT
CCGATCAACTCTATTTGGATCTTCCGCAAAGCAAGCACGTCGACGGGACA
GGCACTACCCTGTGTGTGTCTGTGCACACGTGCCACCACCGCACTCCGGT
CGATGCTGTCTATCCTGTCGTTTCTGTCTCTGCTTCCC

protein sequence of EsuBft2064_6a-0001

>EsuBft2064_6 ID=EsuBft2064_6|Name=EsuBft2064_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=124bp
MGGNAQCGSTTPEVADGKLEDALADQGTTPAVAPPADWKLGLALELEGTT
PAATPPADWKLVLAGVPAPVFGGKGGFATTRPVPTLGEGAWGDTRGRASG
PRVTALPVYVGGKRVAQREHPTSE

mRNA from alignment at Scaffold_347:26583..29831+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2064_6a-0001 ID=EsuBft2064_6a-0001|Name=EsuBft2064_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3249bp|location=Sequence derived from alignment at Scaffold_347:26583..29831+ (Ectocarpus subulatus male Bft15b)
ATGCTACGGCAGCCGTAATTACAGGCTGGAAGTCGGCAATAGTCGTTGGC
ACTACATCTACGTCGATGGGCGGGAATGCACAATGCGGAAGCACTACACC
GGAAGTGGCGGATGGGAAGCTCGAAGATGCACTCGCAGACCAAGGTACAA
CACCGGCAGTGGCACCACCGGCGGACTGGAAGCTCGGACTCGCACTCGAA
CTCGAAGGTACAACACCGGCAGCGACTCCACCGGCGGACTGGAAGCTCGT
ACTCGCAGGTGTGCCCGCTCCTGTGTTTGGTGGGAAAGGGGGGTTCGCAA
CAACAAGGCCTGTCCCAACGCTAGGCGAGGGAGCTTGGGGAGACACACGA
GGGAGGGCATCGGGACCGAGGGTCACAGCACTACCGGTATACGTGGGAGG
CAAGCGAGTGGCCCAGCGTGAACATCCTACATCGGAGTAGGCAAAGGAAA
GCTGGCCATTGAAGAGATGCACGCCATTCTCATCCAACATAATTCTCTGC
CTACGCTGCGTATGGTGGAGAGAAAACAGATTGAATGTGATGCCGGGGAC
TACGTACACGTCCGACATCTGCACGCAAAAATCGGTCTCGCCCGAAGGGC
CGGGCATGTGAAATGCCATGTTGATGCTACCAACACATTGCACGCGCAGA
TAGGCACCATTCCCTACTTGGATGAACTCTTTTCCTGCTGGGATTGGCTT
CATGTCGAACATGTTTTCGCTACTGCTGACAAACGTGTTGCTCGCGCCTC
TGTCGGCCCAAAATTGCTCTCTACCAATCTGCGAAGGGCGACTCTGAACA
GACAAAGCGAAACCACTACCATTCTCACGCGCTACCACATTTGGAAAGAT
CTCGCCTTGTGACACAAAACGTGTCTTGAGGGAGTGAAGATGGCCAGGGG
ATCCGGCTGCGTCGGGAGGAGGCGAATGGTACGGGGCATGGGTCGAGTGC
TGCTGCTGCTGCTGGAACGACGGCGGTGGCGGAGGCTGCGGCGGTGGCTG
CTGCTGCTGCTGGTAGTACGGTGTCGGAGGCGGGTAGTACGGCTGCTGCT
GGTAGCTGTAGTCTTGCGACGGTTGCTGATACTGTGGCTGCTGCTCCCAC
CCCCCATACTCGGTGCCATACGCGGGCCCCCCATGGGGCGCAGCACTATA
CGTTTGACTCACATTTGCATGCCCGTGCGGGGGCCGCCACTGCTGCTGCG
GTGTACGGGGGGGAGCTGGATGTCCGTGATGCTGCTGTCCTCCGTAGCCG
CCGTGAGGTCCGTGCTGGGGCCCACCCCCCCAGCCCCCCCCACTGCGGCT
CGGCTGCTGTGGCGGCGGTCCCCGAGGTTGCTGTTGCTGCTGAGGCCGCT
GCTGGTGTGGGGGCTGTTGCTGTTGTTGGGGCTGAGGCTGTTGCTGAGGC
TGTTGCTGAGGCTGCTGCTGCTTGGGCTGCTGCTTCTTCCGTTGGCGACG
CTGGGTGTAGCACTCGCTGTTGGTATGTGACGAGTACGGATGATAGTCGC
AGCGCTTGTCTCCGTCCGCCCTGTTGTTGCTGCTCCGACCGCCTCCACTG
CCGTCCTGACCCCCGCCGTTCCCACTGGACCCATTTTGGACACGTCCATC
GCCCCGGTTCCCACCGGCAGCGACGAAAGCGTGCCCCGCGCCATTCTGCG
GCTCCCCCTCCCGTGCGGTCACCATATCCTGATGGGCATCTTTCACGACC
TTTTCAAGGTGCTGACGGGTTAAATTGGGGGGCGGAAGGGCACGCAGCAT
GGCTTTCTCCATCTTGTACTCTGAAGACAAGTTGTACACAACGTGCAGAT
TGGCATCATCGTCGGGGTACGTGACGCCGTGTGAGGCTAACCTACTGCGC
AAAACAGCAAATCTCCCGAAGTATTCTTGCGGGGTTTCACCCACTCGCAT
TTTGATTGCATGGTATTCTGCAGTCAACCGTGTTTTTTCTGCCCTTGCCT
GGGGTTCGTAGTATGCTAGAAATAGTTTCCAACCCCCACTGGGACTACCA
TCAGCAATAATCTGGGTCAAGACAGGCATGTAGGTGATTGTCGTGATAAT
CAAATTCCACGCCGTGATCGCCTTGTCTACCGTCTCAGGCGAGTGCATCC
TACGTAAGTCCTCCATGTCTACTCCTTCTAGCCCAACTGGAATTCTGCGG
TCACTCAATACCACTTCCCGGACTCCTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCCCCCCCCACGCTATGCTACGAGTATATCGAATAGATCC
GGCTTGTACGATCCACGATCAGTGGATCGTCGCCGCAATGGATCCGAACC
GACTTCAACAAGCTCTCACCTCTACCAGCCTTTTCACTGCTACCTCTTAT
GTTTCTCTTCTCCAAGATATCTCTCCACGCTTCTCCACGCGGATTTTCCT
CTCTCGGTGCCTGAACTCTTCTTCCTCGGAAACCTTCCAGGCCGACTTTT
TCGTACAATCTCCGATCAACTCTATTTGGATCTTCCGCAAAGCAAGCACG
TCGACGGGACAGGCACTACCCTGTGTGTGTCTGTGCACACGTGCCACCAC
CGCACTCCGGTCGATGCTGTCTATCCTGTCGTTTCTGTCTCTGCTTCCC

Coding sequence (CDS) from alignment at Scaffold_347:26583..29831+

>EsuBft2064_6a-0001 ID=EsuBft2064_6a-0001|Name=EsuBft2064_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=375bp|location=Sequence derived from alignment at Scaffold_347:26583..29831+ (Ectocarpus subulatus male Bft15b)
ATGGGCGGGAATGCACAATGCGGAAGCACTACACCGGAAGTGGCGGATGG
GAAGCTCGAAGATGCACTCGCAGACCAAGGTACAACACCGGCAGTGGCAC
CACCGGCGGACTGGAAGCTCGGACTCGCACTCGAACTCGAAGGTACAACA
CCGGCAGCGACTCCACCGGCGGACTGGAAGCTCGTACTCGCAGGTGTGCC
CGCTCCTGTGTTTGGTGGGAAAGGGGGGTTCGCAACAACAAGGCCTGTCC
CAACGCTAGGCGAGGGAGCTTGGGGAGACACACGAGGGAGGGCATCGGGA
CCGAGGGTCACAGCACTACCGGTATACGTGGGAGGCAAGCGAGTGGCCCA
GCGTGAACATCCTACATCGGAGTAG