EsuBft2064_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2064_5a-0001
Unique NameEsuBft2064_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:30916..32070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4098.XP_009594755.1
ProteomeIdEsuBft2064_5
Protein domainsCoil
Protein domainsIPR005135
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length115
Evalue0.000161
EggNOG OGs2E2QZ@1|root,2S9XW@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_5aEsuBft2064_5aEctocarpus subulatus male Bft15bgeneScaffold_347 30916..32070 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_5a-0001-exonEsuBft2064_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 30916..32070 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_5a-0001-exonagat-three_prime_utr-7981Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 30916..30993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_5a-0001-cdsEsuBft2064_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 30994..32070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_5a-0001EsuBft2064_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 30994..32070 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2064_5a-0001 ID=EsuBft2064_5a-0001|Name=EsuBft2064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1155bp|location=Sequence derived from alignment at Scaffold_347:30916..32070- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACAACGGGGAACAACTCCTTAGACTAGCATCAGAAAACCAACT
CTCCCCGACCAACACCTACTTCCGGACACCGAATGGTAAAGTGCAGCACA
CATTCCAGAGCTTCAACGAGGGGAAGGAGAAGTACCGCCTCGACTTCATC
CTCATGCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCTCCGTCAAACG
TGTCGACTTCAAGGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCC
TCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGC
AGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACG
GGTCCACTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCA
GGCGGCCAACGGGAGAGACACCCGCCGAGCTGACGGCCACGGTGATGTCG
GCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGAGGCGACCCTTAAGGCGATGCTCAAGGCGGCG
CGAAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGA
GGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGG
GTTTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTC
ACCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCAC
GTTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCA
AGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCTC
ACGTGCGTGCCACTCGACGACATCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN
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protein sequence of EsuBft2064_5a-0001

>EsuBft2064_5 ID=EsuBft2064_5|Name=EsuBft2064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=359bp
MNNNGEQLLRLASENQLSPTNTYFRTPNGKVQHTFQSFNEGKEKYRLDFI
LMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGS
SRIRIDLERLRKDKHLRVHFQNRASSRPPPTALRRPTGETPAELTATVMS
AAAETAPLARCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEATLKAMLKAA
RKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSF
TSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWL
TCVPLDDIX
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mRNA from alignment at Scaffold_347:30916..32070-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2064_5a-0001 ID=EsuBft2064_5a-0001|Name=EsuBft2064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1155bp|location=Sequence derived from alignment at Scaffold_347:30916..32070- (Ectocarpus subulatus male Bft15b)
ATGAACAACAACGGGGAACAACTCCTTAGACTAGCATCAGAAAACCAACT
CTCCCCGACCAACACCTACTTCCGGACACCGAATGGTAAAGTGCAGCACA
CATTCCAGAGCTTCAACGAGGGGAAGGAGAAGTACCGCCTCGACTTCATC
CTCATGCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCTCCGTCAAACG
TGTCGACTTCAAGGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCC
TCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGC
AGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACG
GGTCCACTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCA
GGCGGCCAACGGGAGAGACACCCGCCGAGCTGACGGCCACGGTGATGTCG
GCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGAGGCGACCCTTAAGGCGATGCTCAAGGCGGCG
CGAAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGA
GGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGG
GTTTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTC
ACCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCAC
GTTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCA
AGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCTC
ACGTGCGTGCCACTCGACGACATCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN
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Coding sequence (CDS) from alignment at Scaffold_347:30916..32070-

>EsuBft2064_5a-0001 ID=EsuBft2064_5a-0001|Name=EsuBft2064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1077bp|location=Sequence derived from alignment at Scaffold_347:30916..32070- (Ectocarpus subulatus male Bft15b)
ATGAACAACAACGGGGAACAACTCCTTAGACTAGCATCAGAAAACCAACT
CTCCCCGACCAACACCTACTTCCGGACACCGAATGGTAAAGTGCAGCACA
CATTCCAGAGCTTCAACGAGGGGAAGGAGAAGTACCGCCTCGACTTCATC
CTCATGCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCTCCGTCAAACG
TGTCGACTTCAAGGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCC
TCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGC
AGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACG
GGTCCACTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCA
GGCGGCCAACGGGAGAGACACCCGCCGAGCTGACGGCCACGGTGATGTCG
GCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGAGGCGACCCTTAAGGCGATGCTCAAGGCGGCG
CGAAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGA
GGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGG
GTTTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTC
ACCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCAC
GTTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCA
AGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCTC
ACGTGCGTGCCACTCGACGACATCNNN
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