EsuBft2064_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2064_2a-0001
Unique NameEsuBft2064_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:46136..48001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2064_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length39
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_2aEsuBft2064_2aEctocarpus subulatus male Bft15bgeneScaffold_347 46136..48001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_2a-0001EsuBft2064_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 46217..47945 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_2a-0001-exonEsuBft2064_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 46136..46224 +
EsuBft2064_2a-0001-exonagat-exon-51356Ectocarpus subulatus male Bft15bexonScaffold_347 46963..47078 +
EsuBft2064_2a-0001-exonagat-exon-51357Ectocarpus subulatus male Bft15bexonScaffold_347 47809..48001 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_2a-0001-exonagat-five_prime_utr-5182Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 46136..46216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_2a-0001-cdsEsuBft2064_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 46217..46224 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_2a-0001-exonagat-three_prime_utr-7978Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 47946..48001 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2064_2a-0001 ID=EsuBft2064_2a-0001|Name=EsuBft2064_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=398bp|location=Sequence derived from alignment at Scaffold_347:46136..48001+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNGCGGCGGAGCATGCTCAGCGCAAGGGCGATACCTCGATCCACGGAA
GTCAAACACTTGGTGATAATTGGATGCTGCCATGGATAGCGAGGTGTCGG
TGACACCGATGGACGTGGAACCCAATGACAACGAGAGAGGTCGCGGGCGT
GGAGGTTCTCTAGGTGTCTCGAACAAGAGCACACTTCCGACACTTCCACC
TACAGACGAAGAGTCCCGGGAAGGCGACTGGGATTCGGACGCAAGCGATG
ATGACAGCGATGCCATCTTCGACGACCCACACGACGTCGACGGCTACGCC
GACTACGCCGACGGCGACTACGACAGGTTAGCTACATTATGATTTGCGGT
CGCCGGCTTCCCATGCGGCTAGTTTGGGAGCGACTTGGCCGGGCGGTG
back to top

protein sequence of EsuBft2064_2a-0001

>EsuBft2064_2 ID=EsuBft2064_2|Name=EsuBft2064_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MDSEVSVTPMDVEPNDNERGRGRGGSLGVSNKSTLPTLPPTDEESREGDW
DSDASDDDSDAIFDDPHDVDGYADYADGDYDRLATL
back to top

mRNA from alignment at Scaffold_347:46136..48001+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2064_2a-0001 ID=EsuBft2064_2a-0001|Name=EsuBft2064_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1866bp|location=Sequence derived from alignment at Scaffold_347:46136..48001+ (Ectocarpus subulatus male Bft15b)
NNNNGCGGCGGAGCATGCTCAGCGCAAGGGCGATACCTCGATCCACGGAA
GTCAAACACTTGGTGATAATTGGATGCTGCCATGGATAGGTAAGCGAGGG
GTGTTGTGGCCCTCAAACAGAGAGCTAGAGGTGGTTGCAAGTAAGAAATC
GGCACCGCGGAATTGCGTGTGGAACATGCTGTTTTGCTGCGGCGGGTTTG
TGTCGCTCTGGTCTGCTGCCCACACATGTGTCTTGCGACTCGCTGGTGCC
TGAGGGGACAGACACAGAGCTAGTTCCGAGGACCGCGAGTGTAGCAGTGA
AACCGCGAGTGTAGTAGTGCGAGCGCAACCCGTGGTTGCGCCGTGCACCT
GTGAGAAACGAGACGATGAGTGTCGTACAGCAGTACAGCAGCAGAGATCT
CGAGACAGACCGAAGAAACACGATCTTGAAATCTCGCTGTTGTTGATGTC
AACGCTGCGATGGGGCGTCGAGAGCCTCCTTACCTGCGGTTCTTCAGCGT
TGGTTCGAACGATAAGCTGATTTGTGGTTGCCCGGTGGACTAGGAGGTTG
GGGTATACACGAGCGACGAGTTACACCAGCGTTTCCAATAGCAACGCCGT
TGTGTATTTATTTGTGGTCTGCTGCGAAGTTTCTGCTGGCCCCTATGTAT
GTATTATGTATGTAGCAGCAGTTACGAGCTTGCCCGAACCACTGTTCAGG
GCAGGACTCACCCTGGACACCATTGCCGCGACGAATCCTTGGGAGAACTT
CCTGCGATACGGTCGTCATTCGATGTTTTGTGTTCACGGATGTATTTGTA
TTGTCCCGCACCCCTCTCTCCCAGCAGCGAGGTGTCGGTGACACCGATGG
ACGTGGAACCCAATGACAACGAGAGAGGTCGCGGGCGTGGAGGTTCTCTA
GGTGTCTCGAACAAGAGCACACTTCCGACACTTCCACCTACAGGTGAGGG
TTAGAGGTAAATTAGACAAACGTTCGCTTCCCGACGGTGGTTGATGTGGA
TGCGCCGACAAGCACGCCCGCGTGGCATGCATGGAGGTCCGGACGGTAGT
GTACACAGGTCTAAGATAGTGACTCGCGTTACCTGAACCCGTGGCATTGA
GAAATATGAATAACCGAGGTAGGTACGGCTTGATTTCTAAACCTAGGTAG
GTACGACCGAGCCATGAGGAAAGAAACCATGAAATATGGGCCTCCTCCCG
CCGCCGCTGCACCTCGACGTTCATCTACGAATGTCGAAACACCTCGGCGT
TCATCTAGGAATGTCGAAAGAGCTCTCTTGGCCTTCATGGGCGAGCCGGA
CACGGGTAAGCAAGCAAACACCAAGTGTAGTTCAAGGTTTGCTACGTCAC
GGCACCATAGTTTTCGATAGGATTTGTTCGGGCTATCAACCACAGCGGGC
TTGCCCGAGCATTTTTTTTTTTGGCTACGCAGTGTTTAATATCTCTGCTC
ACCCTTCTAGCCCATTTTATTCCTGAGTATTTCCTACATATGTTAAGCTG
TGACCACGGAAATTGGCCCGCGCCAAGTACGGAGAAGTTGGGGCAGAAGG
AGGTACTGGATAGAGACCGGGATGGTTTTTAATTCTTGTGAAAACAACAA
CAACGCGACATCTACGTTCACAAATCCTGACAACTGTTCGCGCTCTCTGC
CTTTTTTGGTGGGCGTGTTGCAGACGAAGAGTCCCGGGAAGGCGACTGGG
ATTCGGACGCAAGCGATGATGACAGCGATGCCATCTTCGACGACCCACAC
GACGTCGACGGCTACGCCGACTACGCCGACGGCGACTACGACAGGTTAGC
TACATTATGATTTGCGGTCGCCGGCTTCCCATGCGGCTAGTTTGGGAGCG
ACTTGGCCGGGCGGTG
back to top

Coding sequence (CDS) from alignment at Scaffold_347:46136..48001+

>EsuBft2064_2a-0001 ID=EsuBft2064_2a-0001|Name=EsuBft2064_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_347:46136..48001+ (Ectocarpus subulatus male Bft15b)
ATGGATAGCGAGGTGTCGGTGACACCGATGGACGTGGAACCCAATGACAA
CGAGAGAGGTCGCGGGCGTGGAGGTTCTCTAGGTGTCTCGAACAAGAGCA
CACTTCCGACACTTCCACCTACAGACGAAGAGTCCCGGGAAGGCGACTGG
GATTCGGACGCAAGCGATGATGACAGCGATGCCATCTTCGACGACCCACA
CGACGTCGACGGCTACGCCGACTACGCCGACGGCGACTACGACAGGTTAG
CTACATTATGA
back to top