EsuBft2064_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2064_10a-0001
Unique NameEsuBft2064_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:3425..8069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog3055.EDP02703
ProteomeIdEsuBft2064_10
Protein domainsIPR029063
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl3055.EDP02703|-
Length156
Hectar predicted targeting categoryother localisation
Evalue9.71e-09
EggNOG OGs2C0D9@1|root,2RRD8@2759|Eukaryota,382HD@33090|Viridiplantae,34NJT@3041|Chlorophyta
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_10aEsuBft2064_10aEctocarpus subulatus male Bft15bgeneScaffold_347 3425..8069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_10a-0001EsuBft2064_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 3425..7989 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_10a-0001-exonagat-exon-51379Ectocarpus subulatus male Bft15bexonScaffold_347 3425..3664 +
EsuBft2064_10a-0001-exonagat-exon-51378Ectocarpus subulatus male Bft15bexonScaffold_347 4115..4220 +
EsuBft2064_10a-0001-exonagat-exon-51380Ectocarpus subulatus male Bft15bexonScaffold_347 4891..5051 +
EsuBft2064_10a-0001-exonagat-exon-51382Ectocarpus subulatus male Bft15bexonScaffold_347 5197..5504 +
EsuBft2064_10a-0001-exonagat-exon-51381Ectocarpus subulatus male Bft15bexonScaffold_347 6060..6283 +
EsuBft2064_10a-0001-exonEsuBft2064_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 7544..8069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_10a-0001-cdsEsuBft2064_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 3425..3664 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_10a-0001-exonagat-three_prime_utr-7977Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 7990..8069 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2064_10a-0001 ID=EsuBft2064_10a-0001|Name=EsuBft2064_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1565bp|location=Sequence derived from alignment at Scaffold_347:3425..8069+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAATCCGCGATGAATCCCTCAGCAGCGTTGGTGGGACCACCGTC
GTGGCACGTGCAGTTGATACGGCATATTTCCACGCTGCCCCTCTGCTCGT
TTGCGGGGAGCAGCCGATTGCGGTGGCAAGACGACTCGATTGGACACAGC
AGTAGCGGCGTGCGCAGGAAAGGGTCGGCCCGATGGAGACTGAGGCCTTC
AGCAGCAGCAGCTGATGCAGGAGCAGACTACGGAAGGCGGCTTGACAATC
CCCGCCGCCCGGTGCCCAACGAGTACCTGGCTGGGTGGGCCTTGACACAA
AACGATACAGCCTGCCTGCAGCAGTTCCAAGACATGGGTTACACAGACTG
TGATGACCACGAGTCGTCACCCGAAGAAGCGAAAGGAGAGAAGGCAGGGT
TCCGTTTGTGGGGGGAGGCCACGAAGGCGTTGATGGACCGGGTGGACATT
GTACACGATCTTGACCAGAGGAGGCTCGCGGCTTCGCGCTACTGGCAGCG
GTTGCAGAGCACCCCGCCAAAGGAAGCACCCGCATCCAACACCGGCAACA
AAGGGAAATTTACCGACCTTGACCTCTCTCCTGGTCTGGCCGCGCCAACT
TGGGCAGACGTAAATGCTCTTTTCGAGAGCGACGACGGCTTTGTACGGCG
AGAAAGCGAACGATACATCGAGGAGGCGAGGGACGGCATGCCTTCCGAAG
GCGGGTGGAGCGGGGATCGGGTGTCGCGACAGTGGGTGGCGAGCTACCGA
CTTTCGGTCTTCGAAACCCGTAGGCAGGCCCAGCGGTTTTTCTCTTGGGG
TATCCCTGACGAGGGGAATGAAACAACCTTGAACCACTTCTACGCCATTT
GTCTTTGCCTGCTTTGCTGGAACGCCCTTGCTAATAGAGCTCTGGACTGC
ATCCTGGAGCCTAGAAAGCGGGTCCTAGAGGTCGGAAGCGGCCTGGGCTA
CTGGGCCTACCTCTTGAAGCTGCGAAGCGGAGATGACTCTCGCGTGCGCT
GCTTCGACCCGTTCGCCCCACCAGCCCGTCAACGTACCGAAGTCTCCACC
ACCGAGGACGAAAGTGGTTATTCGGTCGAAGAAGCACCACCCCGCTCGAT
CGACAACGCTCCCTCACCGGAACCAATCAGTATGCCAGAAGAAGAGGTCG
ACGACTGGTTTGGGGAGGGGCGAGAACCCTTCTCCCCGGCGGAGCGCGGG
TCGTTCGACCGAATTGCCCGCGAGGACGGGTTCCGGAACTGGTCGCTGCT
CATTTGCTGGCCGAGCGACGGGCAGTGGCCGGCCGGCTGCCTGCAGGAGT
TTGCAGGGAACGACTTCTTTTACGTGGGGGAGGGAGAGGGTGGCGCGACA
CGCATGCCTTGGCGGGTGTTGAGGGAGGAGTGGGAGATCGTGAGACGCGT
GGAGATACCCACGTGGCCAGGATTCCGGGACGCGCTCTGGTGGTACAAAA
GGAAAGAACCGGACGCCTTGTCGCGGGACCGATAGGATTACTCTCCCTAC
ACTCTTTGGGGAGCAACAAACGCACATGACGAATGCTGATGTCGATGGTT
ATTTGGCCCAGAATT
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protein sequence of EsuBft2064_10a-0001

>EsuBft2064_10 ID=EsuBft2064_10|Name=EsuBft2064_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=494bp
MVESAMNPSAALVGPPSWHVQLIRHISTLPLCSFAGSSRLRWQDDSIGHS
SSGVRRKGSARWRLRPSAAAADAGADYGRRLDNPRRPVPNEYLAGWALTQ
NDTACLQQFQDMGYTDCDDHESSPEEAKGEKAGFRLWGEATKALMDRVDI
VHDLDQRRLAASRYWQRLQSTPPKEAPASNTGNKGKFTDLDLSPGLAAPT
WADVNALFESDDGFVRRESERYIEEARDGMPSEGGWSGDRVSRQWVASYR
LSVFETRRQAQRFFSWGIPDEGNETTLNHFYAICLCLLCWNALANRALDC
ILEPRKRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARQRTEVST
TEDESGYSVEEAPPRSIDNAPSPEPISMPEEEVDDWFGEGREPFSPAERG
SFDRIAREDGFRNWSLLICWPSDGQWPAGCLQEFAGNDFFYVGEGEGGAT
RMPWRVLREEWEIVRRVEIPTWPGFRDALWWYKRKEPDALSRDR
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mRNA from alignment at Scaffold_347:3425..8069+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2064_10a-0001 ID=EsuBft2064_10a-0001|Name=EsuBft2064_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4645bp|location=Sequence derived from alignment at Scaffold_347:3425..8069+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAATCCGCGATGAATCCCTCAGCAGCGTTGGTGGGACCACCGTC
GTGGCACGTGCAGTTGATACGGCATATTTCCACGCTGCCCCTCTGCTCGT
TTGCGGGGAGCAGCCGATTGCGGTGGCAAGACGACTCGATTGGACACAGC
AGTAGCGGCGTGCGCAGGAAAGGGTCGGCCCGATGGAGACTGAGGCCTTC
AGCAGCAGCAGCTGATGCAGGAGCAGACTACGGAAGGCGGGTGGGTTATT
GTCCTGCTTGCCGATATGCCAGTAGCAGGCGGTTCGGTCTCTCTCCGTTC
GAATCGCGGCACGCCACGATGATATACTTGTGTAGTAACACACGAACGAA
GAGACCGTTGAATAAGTATTTCGCATTTGAGTGTCATCTTTCCGTAGTGC
AAGAAATAGATGATCGGCGCTATGTGGCTTTTGCCACGCAATAGGCCCAA
AATAGGCCCAATGTTACCGTTTTTCCCTCCTGTTTGAGGTCTTGTCTGGA
CTATTGTAGTCTAGTCTACACCCTTCCACAACGTTCCAAACAGCAGATTC
TCGAGTTGATGGTCGTGAAAGACAACGCACGGAGAGTTCTCAACCGCGAC
ATATGTTCACCCTTGAATCAAAGGACCCATACCTCCAAGCTCTTAAAGCT
TTCACCCCCAATCCTGTTCGCGTCCGCGTTGCTTTGGCAGCTTGACAATC
CCCGCCGCCCGGTGCCCAACGAGTACCTGGCTGGGTGGGCCTTGACACAA
AACGATACAGCCTGCCTGCAGCAGTTCCAAGACATGGGTTACACAGGTGC
GATGTGACAATACCCCCCTTCGTTTAAAACATTGACCTCTTCTTGATTTT
CGTTTTTTTGTGCTGTGTTGCGATCTCCTTCAAGTATTTCCGGCCAGTGG
CGCTGATACTGACGATGTTGATGTTCCCTGTGCAGATCGACATGACCGTA
TGGATATTGTTTTGCCCTGTACACTCACCATCTATGCGTGTTTTCTCCTA
GCGATCCCCGATGCCGTTTGACATAATTCACGTGATTTAACGCCAAAAAG
CGACACCCCCCGTCCTTACTCTTCGTGAAGGTGGTGGTATCGGAAACGTT
GAAGTCCCAGCGCCTTTTAGCGGACCCCTCAATCAAGCACGTTAACCACA
TACGGTATGTAGTCGACCCTCCTACACATACACCAATCAAGCAGCTGAGG
CCAGAGAGTCAAATGCTTGTCCCGAGCTTGCTGTACCAGCGGTAGTCGCC
CCCTTGACGTCTCCCGCTGGCCCTCGGGCACTTGCCGAATTATGACATGC
CTACGAAAGCGAGGCTCAGGCAAGACCATGGGCTACATTCTAGAAGGATG
TAGGGCTACCAGTGTCTCGGACAACAAGGAGTCGGTTGTGTTTCACACAT
TCCCCCCCGGCGAGTAAGGTGAAGTTGCCTCTGCCACTGCTGCTGTGATG
CGTGCCGCTACGCAAGACTGTGATGACCACGAGTCGTCACCCGAAGAAGC
GAAAGGAGAGAAGGCAGGGTTCCGTTTGTGGGGGGAGGCCACGAAGGCGT
TGATGGACCGGGTGGACATTGTACACGATCTTGACCAGAGGAGGCTCGCG
GCTTCGCGCTACTGGCAGCGGTTGCAGGTGCATAGGTTGGGTAGGGTGCT
GCTGTTGGTGGTATTGGTGGTGGTGATTGGGGTGTTGATTACCTGTATTG
TCCACAAACCCTGGTTGACTGCCTAACTGACTCGGGTCCTCTACTCCTTC
TCGCGAACCAACTATGCCGCAGAGCACCCCGCCAAAGGAAGCACCCGCAT
CCAACACCGGCAACAAAGGGAAATTTACCGACCTTGACCTCTCTCCTGGT
CTGGCCGCGCCAACTTGGGCAGACGTAAATGCTCTTTTCGAGAGCGACGA
CGGCTTTGTACGGCGAGAAAGCGAACGATACATCGAGGAGGCGAGGGACG
GCATGCCTTCCGAAGGCGGGTGGAGCGGGGATCGGGTGTCGCGACAGTGG
GTGGCGAGCTACCGACTTTCGGTCTTCGAAACCCGTAGGCAGGCCCAGCG
GTTTTTCTCTTGGGGTATCCCTGACGAGGGGTGAGTAAGTTTGAAGTAGG
AGTAGCGTTTTGACGATCAGTCTCGGTGTTGTTTGTTTGGGCGTGGGTAA
GAGTTCGGGTTAGGGTGGGGTATCGCGCGCATGAAAAGCCAGCGTGCAAG
CTTCCCCCCGGCAACACCTCCCGTTTTTTGTGGACGAACTATGGACGTGA
GTTTTGGCCAAGTTTATTGGTACACACGAGGATGCGTCGTTTTTTTTTCG
TCTTTTCGGCGCAAGTTCGCCCCTCCTAGTGCTATCCCTTGAACCACCAA
TTCCGTCTCTTTGTGCGAGGGGCACCTTAAACACGGGGAGCAAGGTTTTC
CCTTAACGGTTTTGGCTCGCGAGAGTCTCTTGAGGGTGATCCTTGTCCCG
ATGCCAAACCTCTGTTGTGAGCGAGATAGCCGTTCGAACGAAGGTGGGCC
CCGGATTCTAATTGCGACGGCCGTTTGGGACGGGACTTCTGTATTACCCC
CCTTATGTGTATTCGGCCGATTCATGATTGTAGAGCAGATACTGACATTA
GGTAGAGTTCTGCTGTAGTCCCTCGGCAACCGTAGGAATGAAACAACCTT
GAACCACTTCTACGCCATTTGTCTTTGCCTGCTTTGCTGGAACGCCCTTG
CTAATAGAGCTCTGGACTGCATCCTGGAGCCTAGAAAGCGGGTCCTAGAG
GTCGGAAGCGGCCTGGGCTACTGGGCCTACCTCTTGAAGCTGCGAAGCGG
AGATGACTCTCGCGTGCGCTGCTTCGACCCGTTCGCCCCACCAGCCCGTC
AACGTACCGGTAACATGCCTTGCGCGCTGCCACAGGCGGCACTTTTTTTT
TTCCAGATTTTGGCAGAACACAGCTGGAAGCTTAGAGCGAACCGCTCGCG
TTCCCCTCGGATTCTCAGTGATGTTTGATTCTTTGGCCGCTTACGAGTTT
CGGAGGTAGGGGTAGTGTTGATTTGATACTTCTTGTCGGGAGCGCGCACA
ATGGCGTTCCTCGGATGGCCACGCCATCGTTTTGAACAGCAAAGCGCTTT
TCCCCGGGCAGCTAATGTAGGGGACGTCACATGAACTGCTTCAGCTGCTC
CATCAGTCTTGCTTTTCTGCAATGATATTGTAGTGTGTTTCGCCTTCCCC
GCGCAGCCCTCGTTAGGGTGTGTCTTCTCGGCAGAATCGAAACTAAAAAT
CAGAACCGAGCTTCAGTTTTAAGTCTAGAAAGAGCCAGCCAAATTCGACC
TACGTGTCTTATCGAAAAATCAGCAAAACTGAGGTTCAAATCGAGAACAC
GCCCGAACGGACGCCGAACAGCCCAACAGTCCCGATAAGCCGCGTGAGCG
ACCTGCGGGCGACGGTTTGTCCTTTTGCACAGCACTCGCACAATCATGGC
TCGCTCTCCTCCCCGCCGTGCGGGCAGCCGCTCTTGGCAGCGAGGGAAAA
TGAAGAAGCGTATGAGGCAGCTCCTGGAGCTGGTGATGTACCCAAACCCA
CCGATGGCACGGGTGGCACATGAATCCCGACTCCATGGCTCGGCGCACGC
CCGTAACAAATCGTCAACAAGTTGAACCTACCGTTGCCGTTCGCCTTCTG
TGACATCATCTTTCTGCTTGCTTGGTGGGCGTGGGTGGTGTAGCGTGTGC
AATCCGCGCGCACGTGGGCGCGCAGCGTGCGAGAAAAACGTCAACCGCCG
CAGCACGCTCCCAACAGCCCAACGTCCACCCGAAGTTGGTGGCGTTTGAC
AAAAGTCGACTCCAAATTAATCCTCTGGCCCTTTTTTCGAGATCGAGTTT
AAGAATAGGAAGATCCGTTCGCTTATCCCGAGAGAACACATTCCAACCAA
TCAGAGCAGATGGACGCTGGCTCTTTCTAGTCTTTAACTGAAAATCGATT
CTGATTTTTAACTCCGATTTTTCCGATAAGACACACCCTGAGATGAAGCG
CAACAGTTTTTCTCGTGCCGTTAGGTGGTGCTCGTTCCTTCACCAACAGA
CGGTTTCTTCAATAAATTTCAAAAATGTTAACCCTCCACATATACGTCCC
GTCGCCGACGCCGTGTCAGAAGTCTCCACCACCGAGGACGAAAGTGGTTA
TTCGGTCGAAGAAGCACCACCCCGCTCGATCGACAACGCTCCCTCACCGG
AACCAATCAGTATGCCAGAAGAAGAGGTCGACGACTGGTTTGGGGAGGGG
CGAGAACCCTTCTCCCCGGCGGAGCGCGGGTCGTTCGACCGAATTGCCCG
CGAGGACGGGTTCCGGAACTGGTCGCTGCTCATTTGCTGGCCGAGCGACG
GGCAGTGGCCGGCCGGCTGCCTGCAGGAGTTTGCAGGGAACGACTTCTTT
TACGTGGGGGAGGGAGAGGGTGGCGCGACACGCATGCCTTGGCGGGTGTT
GAGGGAGGAGTGGGAGATCGTGAGACGCGTGGAGATACCCACGTGGCCAG
GATTCCGGGACGCGCTCTGGTGGTACAAAAGGAAAGAACCGGACGCCTTG
TCGCGGGACCGATAGGATTACTCTCCCTACACTCTTTGGGGAGCAACAAA
CGCACATGACGAATGCTGATGTCGATGGTTATTTGGCCCAGAATT
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Coding sequence (CDS) from alignment at Scaffold_347:3425..8069+

>EsuBft2064_10a-0001 ID=EsuBft2064_10a-0001|Name=EsuBft2064_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1485bp|location=Sequence derived from alignment at Scaffold_347:3425..8069+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAATCCGCGATGAATCCCTCAGCAGCGTTGGTGGGACCACCGTC
GTGGCACGTGCAGTTGATACGGCATATTTCCACGCTGCCCCTCTGCTCGT
TTGCGGGGAGCAGCCGATTGCGGTGGCAAGACGACTCGATTGGACACAGC
AGTAGCGGCGTGCGCAGGAAAGGGTCGGCCCGATGGAGACTGAGGCCTTC
AGCAGCAGCAGCTGATGCAGGAGCAGACTACGGAAGGCGGCTTGACAATC
CCCGCCGCCCGGTGCCCAACGAGTACCTGGCTGGGTGGGCCTTGACACAA
AACGATACAGCCTGCCTGCAGCAGTTCCAAGACATGGGTTACACAGACTG
TGATGACCACGAGTCGTCACCCGAAGAAGCGAAAGGAGAGAAGGCAGGGT
TCCGTTTGTGGGGGGAGGCCACGAAGGCGTTGATGGACCGGGTGGACATT
GTACACGATCTTGACCAGAGGAGGCTCGCGGCTTCGCGCTACTGGCAGCG
GTTGCAGAGCACCCCGCCAAAGGAAGCACCCGCATCCAACACCGGCAACA
AAGGGAAATTTACCGACCTTGACCTCTCTCCTGGTCTGGCCGCGCCAACT
TGGGCAGACGTAAATGCTCTTTTCGAGAGCGACGACGGCTTTGTACGGCG
AGAAAGCGAACGATACATCGAGGAGGCGAGGGACGGCATGCCTTCCGAAG
GCGGGTGGAGCGGGGATCGGGTGTCGCGACAGTGGGTGGCGAGCTACCGA
CTTTCGGTCTTCGAAACCCGTAGGCAGGCCCAGCGGTTTTTCTCTTGGGG
TATCCCTGACGAGGGGAATGAAACAACCTTGAACCACTTCTACGCCATTT
GTCTTTGCCTGCTTTGCTGGAACGCCCTTGCTAATAGAGCTCTGGACTGC
ATCCTGGAGCCTAGAAAGCGGGTCCTAGAGGTCGGAAGCGGCCTGGGCTA
CTGGGCCTACCTCTTGAAGCTGCGAAGCGGAGATGACTCTCGCGTGCGCT
GCTTCGACCCGTTCGCCCCACCAGCCCGTCAACGTACCGAAGTCTCCACC
ACCGAGGACGAAAGTGGTTATTCGGTCGAAGAAGCACCACCCCGCTCGAT
CGACAACGCTCCCTCACCGGAACCAATCAGTATGCCAGAAGAAGAGGTCG
ACGACTGGTTTGGGGAGGGGCGAGAACCCTTCTCCCCGGCGGAGCGCGGG
TCGTTCGACCGAATTGCCCGCGAGGACGGGTTCCGGAACTGGTCGCTGCT
CATTTGCTGGCCGAGCGACGGGCAGTGGCCGGCCGGCTGCCTGCAGGAGT
TTGCAGGGAACGACTTCTTTTACGTGGGGGAGGGAGAGGGTGGCGCGACA
CGCATGCCTTGGCGGGTGTTGAGGGAGGAGTGGGAGATCGTGAGACGCGT
GGAGATACCCACGTGGCCAGGATTCCGGGACGCGCTCTGGTGGTACAAAA
GGAAAGAACCGGACGCCTTGTCGCGGGACCGATAG
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