EsuBft2058_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2058_5a-0001
Unique Name	EsuBft2058_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_372	contig	Scaffold_372:5960..8523 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FXD3
ProteomeId	EsuBft2058_5
Protein domains	IPR004875
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Note	pogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	2158
Hectar predicted targeting category	other localisation
Evalue	2.05e-139
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	POGK
KEGG ko	ko:K09228
Description	DNA binding
COG category	CH
BRITE	ko00000,ko03000

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2058_5a	EsuBft2058_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_372 5960..8523 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2058_5a-0001	EsuBft2058_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_372 6134..7805 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2058_5a-0001-exon	agat-exon-41696	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 5960..6578 +
EsuBft2058_5a-0001-exon	EsuBft2058_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 6912..7540 +
EsuBft2058_5a-0001-exon	agat-exon-41695	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 7614..8523 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2058_5a-0001-exon	agat-five_prime_utr-5149	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_372 5960..6133 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2058_5a-0001-cds	EsuBft2058_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_372 6134..6578 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2058_5a-0001-exon	agat-three_prime_utr-7930	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_372 7806..8523 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_372:5960..8523+
coding sequence from alignment at Scaffold_372:5960..8523+

spliced messenger RNA

>EsuBft2058_5a-0001 ID=EsuBft2058_5a-0001|Name=EsuBft2058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2158bp|location=Sequence derived from alignment at Scaffold_372:5960..8523+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGCTGGAGCAGGTGGAGCAGCTCAGGGAGAAGGTTAGCGCCAATCCCAA
GCTTTCGAAGGCCAAGCAGGTTCACAGCGGAGGGAAAGCTTCGACAGTCG
ACGCCGAGCAAGCCCTTGTGGACTACATTGACGAGCAGCGCAAGCAGCAC
CACGGTTGTGGTAATCGGGAGGTGATGAACAAGCTGCTCGAGTTGAAGCC
TAACGCCCTTGGCGGCATGTCGGCGAACGCGAAACCGACGGAGGCGCTGG
CTTTCAAGGTCAAGATCAACTCCTGGTACCAACGGTTCCGCAAGCGGAAT
GGGTTCAGCATCCGCCGGCGTACCAGCGTGGGCCAAAAACTGCCGAAGGG
GTACGAGGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCG
TAAGGCGCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCTGAC
GAGAGCCCCATCAAAGGAGAGGATCTGACTTTCGAGCAGCTGGCGTCTGT
GGAGGCGGAGGTTTTCAAGGAACTCGGCAACATGGACCAGACGCCAGTCC
AGCACGAGATGCCGGTGGAGACCACTCTGGAGAAGACCGGTGCGAAGGAT
GCTCGCATCAGCACAGGAGGCAAAGAGAAGGAACGCTTCACGCTCGTTCT
GGCTGTCATGGCGGACGGCAAAAAGGTTTCGCCGCGCATCATCTTCAAGG
GTACGCCGTTCATCCCCCCGGCCGTGAGTGGCAAGGGCAAGAGCACCCTG
CCGCGGAAGAACTCCGTCGCGTGGGAGATCCATCCTGCGAACCGCGCCAA
GCACGACCACCCTGCCAACGGCATGTCCTTCGGCGTGCAGGAGAAGAGCT
GGAGTGACCAGCGGGAGTGCAACGGGTGGATCTCGGGCAGTTGGAAGCTC
CGTCCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGCATCCTGGTGCT
GGACGACTTCAAGTGCCACAAGGACGAGGGTTACATCGCCGCCCTCAAGA
GAGACGCCAACACCATCGTCATCGTCATCCCAGGCGGGTTGACGCCCTTG
CTCCAACCGCTCGACCGCATGCTCAACAAGCAGATGAAGCGGCTGCTGCG
GGGTAAGTACACCGCCTACAGCGCGTCGGCGGTCGCGGACGCCCGGTCGG
GGAAGCTGAAGCCACCGGAGCGTGGGGTCGTCTCTACGTGGTGCAAGGAA
GCGTGGGAGTCTATCACCCCCGAGACGGTGTCATCCGTACGCAAGGAACG
CTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCT
CCGTCCNCGAGACGGTGAAGACTTGCTTCAAGATCTGCGGTCTCACGCTC
GCGCTCGACGGCAGCGAAGACCACGCCTGGTGCGAGCACAACTTCGGGGA
AGACTACCGCGACCTTCTCGAGGAGCAGTACGCCGTATGACTCGCTGAGT
ACCCCGTCGTGACTCTCCCGTCGCTCAAGCTGCCGAAGGTACCAGGGGGG
TTCGACTCCAACCCCATCACGGCTGCTCAGAAGGAGGTCGAGGGGAAGCT
GCCCTGAGTCGCTGATGAGAGCGACAGCGAGGTGGAGGTCTTGGAGGGCG
ACAGCGACGTGGAAGTCGTGGAGGGGCAGGGGGGCGGGGGCGCCGAAGGA
GAAGTAGTCGAACTTTGAATCATAGTTCTTTGAGCTTGCCATGGAGATTG
GATGTTTTTGCGATGGTAGGGGCGCGGGCACGAAGTAGAGTTTAACCCGC
CTGGGAAGGACAGTAGTAGGACGTTGGTAGCTCGTAGTGGTAGTTTGTTG
TTATTATTTTCTTCGTTTTTGGTTTCATCTGCGTTTAGAATTATGGAGTG
GATGCCGTTTGCCGATTTGCCGATCTTGATTCTTCAGAACGAAAAGAAGA
GAACAAAGAGTACAAATACCACATTATTGAACATCGTCATGGTGCCAAGG
GCAGCAGTAGCAGTGGAGCACGCGATTCAAGCTCCCACAGTATCCGGAAT
TTCCAGCACAAGATGCTGGTGAAAGGGTATCACTTCCCGCCAAACCTCAC
CGCACGTATCGGCGTCTCCGCACAGTGTGTGGAGACGACGATACCTGTGC
GATAATCTAGCAAATCATTCGGAACCCGCTTCTTTTCCGCATACCCTGCG
CCAAGACC

protein sequence of EsuBft2058_5a-0001

>EsuBft2058_5 ID=EsuBft2058_5|Name=EsuBft2058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=421bp
MNKLLELKPNALGGMSANAKPTEALAFKVKINSWYQRFRKRNGFSIRRRT
SVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGED
LTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK
EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAW
EIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIV
QQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRML
NKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPE
TVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSEDH
AWCEHNFGEDYRDLLEEQYAV

mRNA from alignment at Scaffold_372:5960..8523+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2058_5a-0001 ID=EsuBft2058_5a-0001|Name=EsuBft2058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2564bp|location=Sequence derived from alignment at Scaffold_372:5960..8523+ (Ectocarpus subulatus male Bft15b)
TGGCTGGAGCAGGTGGAGCAGCTCAGGGAGAAGGTTAGCGCCAATCCCAA
GCTTTCGAAGGCCAAGCAGGTTCACAGCGGAGGGAAAGCTTCGACAGTCG
ACGCCGAGCAAGCCCTTGTGGACTACATTGACGAGCAGCGCAAGCAGCAC
CACGGTTGTGGTAATCGGGAGGTGATGAACAAGCTGCTCGAGTTGAAGCC
TAACGCCCTTGGCGGCATGTCGGCGAACGCGAAACCGACGGAGGCGCTGG
CTTTCAAGGTCAAGATCAACTCCTGGTACCAACGGTTCCGCAAGCGGAAT
GGGTTCAGCATCCGCCGGCGTACCAGCGTGGGCCAAAAACTGCCGAAGGG
GTACGAGGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCG
TAAGGCGCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCTGAC
GAGAGCCCCATCAAAGGAGAGGATCTGACTTTCGAGCAGCTGGCGTCTGT
GGAGGCGGAGGTTTTCAAGGAACTCGGCAACATGGACCAGACGCCAGTCC
AGCACGAGATGCCGGTGGAGACCACTCTGGAGAAGACCGGTGCGAAGGAT
GCTCGCATCAGCACAGGAGGTGAGGGCGAGCTAATATTTTTGTCAAAATT
TTGTGTGGTGTGCGGATTTTTTGTCATTGGACAATTTTTAAGACACATGT
TTTTTTTGCGTGCCGGTACACGGTGCGATGTAGCTCTATCGGTAGACACA
GGAGGGTTGCTACCTTTTTCTGTGGGATTATTCTACACTTCCTTTTTCAT
TGCATCCAAACTATCAACCAACTTAGTTTTCGAAACGTCCGGTACCGTTT
GCATCCATTGCATCAACCACACACCACTGTCCTCGCAGAGATATTCAACA
CCTACTCCCTCCCCCCCCTCCCCTCGCGTTGATTTTTCCCCCCTCCCCTC
AGGCAAAGAGAAGGAACGCTTCACGCTCGTTCTGGCTGTCATGGCGGACG
GCAAAAAGGTTTCGCCGCGCATCATCTTCAAGGGTACGCCGTTCATCCCC
CCGGCCGTGAGTGGCAAGGGCAAGAGCACCCTGCCGCGGAAGAACTCCGT
CGCGTGGGAGATCCATCCTGCGAACCGCGCCAAGCACGACCACCCTGCCA
ACGGCATGTCCTTCGGCGTGCAGGAGAAGAGCTGGAGTGACCAGCGGGAG
TGCAACGGGTGGATCTCGGGCAGTTGGAAGCTCCGTCCCAACAACGGCAG
CATCGTCCAGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCC
ACAAGGACGAGGGTTACATCGCCGCCCTCAAGAGAGACGCCAACACCATC
GTCATCGTCATCCCAGGCGGGTTGACGCCCTTGCTCCAACCGCTCGACCG
CATGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGGTAAGTACACCGCCT
ACAGCGCGTCGGCGGTCGCGGACGCCCGGTCGGGGAAGCTGAAGCCACCG
GAGCGTGGGGTCGTCTCTACGTGGTGCAAGGAAGCGTGGGAGTCTATCAC
CCCCGAGACGGTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAA
CACCCTTAGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGAGTATCTC
ACAGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGG
CGTGCTCCGTCCNCGAGACGGTGAAGACTTGCTTCAAGATCTGCGGTCTC
ACGCTCGCGCTCGACGGCAGCGAAGACCACGCCTGGTGCGAGCACAACTT
CGGGGAAGACTACCGCGACCTTCTCGAGGAGCAGTACGCCGTATGACTCG
CTGAGTACCCCGTCGTGACTCTCCCGTCGCTCAAGCTGCCGAAGGTACCA
GGGGGGTTCGACTCCAACCCCATCACGGCTGCTCAGAAGGAGGTCGAGGG
GAAGCTGCCCTGAGTCGCTGATGAGAGCGACAGCGAGGTGGAGGTCTTGG
AGGGCGACAGCGACGTGGAAGTCGTGGAGGGGCAGGGGGGCGGGGGCGCC
GAAGGAGAAGTAGTCGAACTTTGAATCATAGTTCTTTGAGCTTGCCATGG
AGATTGGATGTTTTTGCGATGGTAGGGGCGCGGGCACGAAGTAGAGTTTA
ACCCGCCTGGGAAGGACAGTAGTAGGACGTTGGTAGCTCGTAGTGGTAGT
TTGTTGTTATTATTTTCTTCGTTTTTGGTTTCATCTGCGTTTAGAATTAT
GGAGTGGATGCCGTTTGCCGATTTGCCGATCTTGATTCTTCAGAACGAAA
AGAAGAGAACAAAGAGTACAAATACCACATTATTGAACATCGTCATGGTG
CCAAGGGCAGCAGTAGCAGTGGAGCACGCGATTCAAGCTCCCACAGTATC
CGGAATTTCCAGCACAAGATGCTGGTGAAAGGGTATCACTTCCCGCCAAA
CCTCACCGCACGTATCGGCGTCTCCGCACAGTGTGTGGAGACGACGATAC
CTGTGCGATAATCTAGCAAATCATTCGGAACCCGCTTCTTTTCCGCATAC
CCTGCGCCAAGACC

Coding sequence (CDS) from alignment at Scaffold_372:5960..8523+

>EsuBft2058_5a-0001 ID=EsuBft2058_5a-0001|Name=EsuBft2058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1266bp|location=Sequence derived from alignment at Scaffold_372:5960..8523+ (Ectocarpus subulatus male Bft15b)
ATGAACAAGCTGCTCGAGTTGAAGCCTAACGCCCTTGGCGGCATGTCGGC
GAACGCGAAACCGACGGAGGCGCTGGCTTTCAAGGTCAAGATCAACTCCT
GGTACCAACGGTTCCGCAAGCGGAATGGGTTCAGCATCCGCCGGCGTACC
AGCGTGGGCCAAAAACTGCCGAAGGGGTACGAGGGTATGGCGTGGGCGAC
GGTGATGAAGCTGCGCGAGGCTCTCGTAAGGCGCGCCGGTGAGATCTACG
CTCGGCGCCACCCGCCGGCACCTGACGAGAGCCCCATCAAAGGAGAGGAT
CTGACTTTCGAGCAGCTGGCGTCTGTGGAGGCGGAGGTTTTCAAGGAACT
CGGCAACATGGACCAGACGCCAGTCCAGCACGAGATGCCGGTGGAGACCA
CTCTGGAGAAGACCGGTGCGAAGGATGCTCGCATCAGCACAGGAGGCAAA
GAGAAGGAACGCTTCACGCTCGTTCTGGCTGTCATGGCGGACGGCAAAAA
GGTTTCGCCGCGCATCATCTTCAAGGGTACGCCGTTCATCCCCCCGGCCG
TGAGTGGCAAGGGCAAGAGCACCCTGCCGCGGAAGAACTCCGTCGCGTGG
GAGATCCATCCTGCGAACCGCGCCAAGCACGACCACCCTGCCAACGGCAT
GTCCTTCGGCGTGCAGGAGAAGAGCTGGAGTGACCAGCGGGAGTGCAACG
GGTGGATCTCGGGCAGTTGGAAGCTCCGTCCCAACAACGGCAGCATCGTC
CAGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCCACAAGGA
CGAGGGTTACATCGCCGCCCTCAAGAGAGACGCCAACACCATCGTCATCG
TCATCCCAGGCGGGTTGACGCCCTTGCTCCAACCGCTCGACCGCATGCTC
AACAAGCAGATGAAGCGGCTGCTGCGGGGTAAGTACACCGCCTACAGCGC
GTCGGCGGTCGCGGACGCCCGGTCGGGGAAGCTGAAGCCACCGGAGCGTG
GGGTCGTCTCTACGTGGTGCAAGGAAGCGTGGGAGTCTATCACCCCCGAG
ACGGTGTCATCCGTACGCAAGGAACGCTTCGCGCTTGGTGATGTGAGAGC
CTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCNCGAGACGGTGAAGACTT
GCTTCAAGATCTGCGGTCTCACGCTCGCGCTCGACGGCAGCGAAGACCAC
GCCTGGTGCGAGCACAACTTCGGGGAAGACTACCGCGACCTTCTCGAGGA
GCAGTACGCCGTATGA