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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 303518.XP_005753988.1 |
ProteomeId | EsuBft2058_4 |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | CYTOPLASMIC_DOMAIN |
Protein domains | TMhelix |
Protein domains | Coil |
Protein domains | IPR000477 |
Protein domains | TRANSMEMBRANE |
Protein domains | IPR005135 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 7 |
Max annot lvl | 33208|Metazoa |
Length | 250 |
Evalue | 5.94e-07 |
EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39Y9N@33154|Opisthokonta,3BKRZ@33208|Metazoa,3CWQ0@33213|Bilateria,48I85@7711|Chordata,49F0F@7742|Vertebrata,4A6Z6@7898|Actinopterygii |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2058_4a-0001 ID=EsuBft2058_4a-0001|Name=EsuBft2058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2502bp|location=Sequence derived from alignment at Scaffold_372:9733..13078- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCATAGATGCGGGGAAACTCGCCGGTCGGAAATACGGAAGAAAGCACA CCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGGAGCGGACGTCA AGACGGCTGCGAAGAAGAAGGCACGGGAGGGTGACCTATTGTTCGGCACG TTCAACGTACGCACGCTCGCCTACAGCGGTAGAAATCCCATCGGCCACAA CGTGATGACGGTCATACAGATCTGTTCCGCGACCGGCTGTGATGTGATAG GACTTCAGGAGACCCGACGAGAGGGGCAGAGGGGCAACGTTCAATTGCAC ACGACGGCGATCAAGGAGGCCATGTGCGAGAGTGTGGGCGAGGAAGGTAG GACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTG GCCGCACCTGCGGAGTAACTTTCGTGGTGGGGTNNNNNNNNNNNNNNNNN NNNNTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGG CGTACACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGG GCGAGGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGAG NATGAGGACGCCCCCACGGAAACTGTCCGCACGGCGGCGGGCGGTGATGT TAACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGG AGGCGAGACGGGTGCTGCGATGCCAAGATTATGGNNCCTACTTCTGGACA CCGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGGAAGGA GAAGTACCGCCTCGAGTTCATCCTCATGCGTCAGACGGACCGGCGTTTCG TGCACAATGTCTCCGTCAAACGTGTCGACTTCATGGACTCTGACCACAAC CTCGTGCTTACGACTGTGCCCCTCCCCCCCCGTGTCGCACCCAACCGACG AGTGCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGGCCTCGAGCGGT TAACGAAGAACAAACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAAC CGCTCTCCGCCAACGGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGA GCTGACGGCTACGGTCATGTCGGCCGCCGCTGAGACCGCGCCGCTGGCGA GGTGCGCACGAGGGCAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAG ATCTCCGAAGCGTCCAAAGAGATTAAGGCGGCCCAGCAGCAACTGCGTGG GGCCTCAAAGAACAGCGCCTTCGAGCATCGCAAGGTGGAGAGCACTGGAA ACNTCCTACTTCCGGACGCCTACTTCTGGACACCGAAAGGTGGAGTGCAG CACACATTCCAGAGCTCCAACAAGGGGAAGGAGAAGTACCGCCTCGAGTT CATCCTCATGCGTCAGACGGACCGGCGTTTCGTGCACAATGTCTCCGTCA AACGTGTCGACTTCATGGACTCTGACCACAACCTCGTGCTTACGACTGTG CCCCTCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGG AAGCAGCCGGATCCGTATCGGCCTCGAGCGGTTAACGAAGAACAAACACC TACGGGTCGCCTTCCAAAACAGGGCCTCCAACCGCTCTCCGCCAACGGCG CTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACNGTTCA TCCTCATGCGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCA CCACTCAGAACATCAAGGACGAGGACGGCATGGTCCTTCGGGACCCCACG TTCATTCGCCAACGGTGGGCACGGTGGTTACACAAGCTTCTCAACACCAA GTCGCCGACCGTCGACCTGCATGCGGCTGACAAGGTAAAGCGGTGGTCCA CGTGCGTGCCAGTTGACGACATCCCATCTCTACTCGAGGTTGAGGAAGCG GTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGC TGAGCTGATCAAGCTTTTCCTCGACGGAGATCAAGATCGCCTCCGCGAAT TCCACGCCATTGTCGTGGACGTGTGGCAGACGGGGGACGGCATGAGGGCG TGCGCGTCCGAACGGACGATGGGCAGTACTGAATGGTTCGACGTGGGCCA AGGCCTCCGGCAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCT TTGCCGCGATGCTCATGGTTACCGTGGCCGAGTTCGACAAGGACCCCAAG GTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGCACACTGGCAA GAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGTGGAGG CCTTGTGGGCCATGCTCTACGCTGAAGACGTGGCCATCGTATCGCGCTCG CCTGAGTCTCGAGAAGATGATGTCGATCATCGTGCGCGTGGCCGGCCTGT TCGGACAAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGT AG back to topprotein sequence of EsuBft2058_4a-0001 >EsuBft2058_4 ID=EsuBft2058_4|Name=EsuBft2058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=833bp
MHRCGETRRSEIRKKAHPQREVDRERHETGADVKTAAKKKAREGDLLFGT FNVRTLAYSGRNPIGHNVMTVIQICSATGCDVIGLQETRREGQRGNVQLH TTAIKEAMCESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGXXXXXX XXIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKE XEDAPTETVRTAAGGDVNAKDSFWTALDAAIREEARRVLRCQDYGXYFWT PKGGVQHTFQSSNKGKEKYRLEFILMRQTDRRFVHNVSVKRVDFMDSDHN LVLTTVPLPPRVAPNRRVRGNSGSSRIRIGLERLTKNKHLRVAFQNRASN RSPPTALRRPTGETAAELTATVMSAAAETAPLARCARGQRGWYTSEAQHE ISEASKEIKAAQQQLRGASKNSAFEHRKVESTGNXLLPDAYFWTPKGGVQ HTFQSSNKGKEKYRLEFILMRQTDRRFVHNVSVKRVDFMDSDHNLVLTTV PLPPRVAPNRRVRGNSGSSRIRIGLERLTKNKHLRVAFQNRASNRSPPTA LRRPTGETAAELTATVHPHAHLKMIDVEGKRSFTTQNIKDEDGMVLRDPT FIRQRWARWLHKLLNTKSPTVDLHAADKVKRWSTCVPVDDIPSLLEVEEA VREMANRKAVGPDDLPAELIKLFLDGDQDRLREFHAIVVDVWQTGDGMRA CASERTMGSTEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVTVAEFDKDPK VTADMVKIGTQVEHTGKKGRSAGKKTTVVTDVEALWAMLYAEDVAIVSRS PESREDDVDHRARGRPVRTKRRWGGRNGDRALL back to topmRNA from alignment at Scaffold_372:9733..13078- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2058_4a-0001 ID=EsuBft2058_4a-0001|Name=EsuBft2058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3346bp|location=Sequence derived from alignment at Scaffold_372:9733..13078- (Ectocarpus subulatus male Bft15b) ATGCATAGATGCGGGGAAACTCGCCGGTCGGAAATACGGAAGAAAGCACA
CCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGGAGCGGACGTCA
AGACGGCTGCGAAGAAGAAGGCACGGGAGGGTGACCTATTGTTCGGCACG
TTCAACGTACGCACGCTCGCCTACAGCGGTAGAAATCCCATCGGCCACAA
CGTGATGACGGTCATACAGATCTGTTCCGCGACCGGCTGTGATGTGATAG
GACTTCAGGAGACCCGACGAGAGGGGCAGAGGGGCAACGTTCAATTGCAC
ACGACGGGTACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCGAGGAC
AAGAGGGTCGTACACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGCGA
GAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGA
TGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGTG
GGGTNNNNNNNNNNNNNNNNNNNNNTGATCATCTGGAGTGGCGCCCGTGC
TGGCACCAAGGACAAGAGGGGCGTACACGGTGTGGGCATAGCGATCAAGG
AGGCCATGTGGGAGAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATT
AGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGT
AACCTTCGTGGTGGGGACGCTCCCACGGAAACTGTCCGCACCACGGCGGG
CGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAGCGA
TCCGGGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGGACGCCAAC
GCACGTACTGGTAGGAGNATGAGGACGCCCCCACGGAAACTGTCCGCACG
GCGGCGGGCGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGCTCTCGA
CGCAGCGATCCGGGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGG
ACGCCAACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCGATGCCAAG
ATTATGGNNCCTACTTCTGGACACCGAAAGGTGGAGTGCAGCACACATTC
CAGAGCTCCAACAAGGGGAAGGAGAAGTACCGCCTCGAGTTCATCCTCAT
GCGTCAGACGGACCGGCGTTTCGTGCACAATGTCTCCGTCAAACGTGTCG
ACTTCATGGACTCTGACCACAACCTCGTGCTTACGACTGTGCCCCTCCCC
CCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGCAGCCG
GATCCGTATCGGCCTCGAGCGGTTAACGAAGAACAAACACCTACGGGTCG
CCTTCCAAAACAGGGCCTCCAACCGCTCTCCGCCAACGGCGCTCAGGCGG
CCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTCATGTCGGCCGC
CGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCAGAGAGGCTGGT
ACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCCAAAGAGATTAAG
GCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACAGCGCCTTCGAGGT
GACCCTGAAGGCGATTCCTAAGGCGGCGCGGAAGAAGCGCAGCATCGCAA
GGTGGAGAGCACTGGAAACNTCCTACTTCCGGACGCCTACTTCTGGACAC
CGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGGAAGGAG
AAGTACCGCCTCGAGTTCATCCTCATGCGTCAGACGGACCGGCGTTTCGT
GCACAATGTCTCCGTCAAACGTGTCGACTTCATGGACTCTGACCACAACC
TCGTGCTTACGACTGTGCCCCTCCCCCCCCGTGTCGCACCCAACCGACGA
GTGCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGGCCTCGAGCGGTT
AACGAAGAACAAACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAACC
GCTCTCCGCCAACGGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGAG
CTGACGGCTACNGTTCATCCTCATGCGTCAGACGGACCGGCGTTTCGTGC
ACAATGTCTCCGTCAAACGTGTCGACTTCATGGACTCTGACCACAACCTC
GTGCTTACGACTGTGCCCCTCCCCCCCCGTGTCGCACCCAACCGACGAGT
GCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGGCCTCGAGCGGTTAA
CGAAGAACAAACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCANGTTT
CTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCACCA
CTCAGAACATCAAGGACGAGGACGGCATGGTCCTTCGGGACCCCACGTTC
ATTCGCCAACGGTGGGCACGGTGGTTACACAAGCTTCTCAACACCAAGTC
GCCGACCGTCGACCTGCATGCGGCTGACAAGGTAAAGCGGTGGTCCACGT
GCGTGCCAGTTGACGACATCCCATCTCTACTCGAGGTTGAGGAAGCGGTA
CGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGA
GCTGATCAAGCTTTTCCTCGACGGAGATCAAGATCGCCTCCGCGAATTCC
ACGCCATTGTCGTGGACGTGTGGCAGACGGGGGACGTACTACAGCAGTGG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGCCACTTCCACGAGGGCATGAGGGCGTGCGCG
TCCGAACGGACGATGGGCAGTACTGAATGGTTCGACGTGGGCCAAGGCCT
CCGGCAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTGCCG
CGATGCTCATGGTTACCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACG
GCGGACATGGTCAAGATCGGGACACAAGTGGAGCACACTGGCAAGAAGGG
CAGGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGTGGAGGCCTTGT
GGGCCATGCTCTACGCTGAAGACGTGGCCATCGTATCGCGCTCGCCTGAG
TCTCGAGAAGATGATGTCGATCATCGTGCGCGTGGCCGGCCTGTTCGGAC
AAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAG back to topCoding sequence (CDS) from alignment at Scaffold_372:9733..13078- >EsuBft2058_4a-0001 ID=EsuBft2058_4a-0001|Name=EsuBft2058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2502bp|location=Sequence derived from alignment at Scaffold_372:9733..13078- (Ectocarpus subulatus male Bft15b) ATGCATAGATGCGGGGAAACTCGCCGGTCGGAAATACGGAAGAAAGCACA CCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGGAGCGGACGTCA AGACGGCTGCGAAGAAGAAGGCACGGGAGGGTGACCTATTGTTCGGCACG TTCAACGTACGCACGCTCGCCTACAGCGGTAGAAATCCCATCGGCCACAA CGTGATGACGGTCATACAGATCTGTTCCGCGACCGGCTGTGATGTGATAG GACTTCAGGAGACCCGACGAGAGGGGCAGAGGGGCAACGTTCAATTGCAC ACGACGGCGATCAAGGAGGCCATGTGCGAGAGTGTGGGCGAGGAAGGTAG GACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTG GCCGCACCTGCGGAGTAACTTTCGTGGTGGGGTNNNNNNNNNNNNNNNNN NNNNTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGG CGTACACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGG GCGAGGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGAG NATGAGGACGCCCCCACGGAAACTGTCCGCACGGCGGCGGGCGGTGATGT TAACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGG AGGCGAGACGGGTGCTGCGATGCCAAGATTATGGNNCCTACTTCTGGACA CCGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGGAAGGA GAAGTACCGCCTCGAGTTCATCCTCATGCGTCAGACGGACCGGCGTTTCG TGCACAATGTCTCCGTCAAACGTGTCGACTTCATGGACTCTGACCACAAC CTCGTGCTTACGACTGTGCCCCTCCCCCCCCGTGTCGCACCCAACCGACG AGTGCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGGCCTCGAGCGGT TAACGAAGAACAAACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAAC CGCTCTCCGCCAACGGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGA GCTGACGGCTACGGTCATGTCGGCCGCCGCTGAGACCGCGCCGCTGGCGA GGTGCGCACGAGGGCAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAG ATCTCCGAAGCGTCCAAAGAGATTAAGGCGGCCCAGCAGCAACTGCGTGG GGCCTCAAAGAACAGCGCCTTCGAGCATCGCAAGGTGGAGAGCACTGGAA ACNTCCTACTTCCGGACGCCTACTTCTGGACACCGAAAGGTGGAGTGCAG CACACATTCCAGAGCTCCAACAAGGGGAAGGAGAAGTACCGCCTCGAGTT CATCCTCATGCGTCAGACGGACCGGCGTTTCGTGCACAATGTCTCCGTCA AACGTGTCGACTTCATGGACTCTGACCACAACCTCGTGCTTACGACTGTG CCCCTCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGG AAGCAGCCGGATCCGTATCGGCCTCGAGCGGTTAACGAAGAACAAACACC TACGGGTCGCCTTCCAAAACAGGGCCTCCAACCGCTCTCCGCCAACGGCG CTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACNGTTCA TCCTCATGCGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCA CCACTCAGAACATCAAGGACGAGGACGGCATGGTCCTTCGGGACCCCACG TTCATTCGCCAACGGTGGGCACGGTGGTTACACAAGCTTCTCAACACCAA GTCGCCGACCGTCGACCTGCATGCGGCTGACAAGGTAAAGCGGTGGTCCA CGTGCGTGCCAGTTGACGACATCCCATCTCTACTCGAGGTTGAGGAAGCG GTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGC TGAGCTGATCAAGCTTTTCCTCGACGGAGATCAAGATCGCCTCCGCGAAT TCCACGCCATTGTCGTGGACGTGTGGCAGACGGGGGACGGCATGAGGGCG TGCGCGTCCGAACGGACGATGGGCAGTACTGAATGGTTCGACGTGGGCCA AGGCCTCCGGCAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCT TTGCCGCGATGCTCATGGTTACCGTGGCCGAGTTCGACAAGGACCCCAAG GTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGCACACTGGCAA GAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGTGGAGG CCTTGTGGGCCATGCTCTACGCTGAAGACGTGGCCATCGTATCGCGCTCG CCTGAGTCTCGAGAAGATGATGTCGATCATCGTGCGCGTGGCCGGCCTGT TCGGACAAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGT AG back to top
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