EsuBft2058_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2058_3a-0001
Unique NameEsuBft2058_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:13297..14791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2058_3
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length36
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2058_3aEsuBft2058_3aEctocarpus subulatus male Bft15bgeneScaffold_372 13297..14791 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2058_3a-0001-exonEsuBft2058_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 13297..13374 +
EsuBft2058_3a-0001-exonagat-exon-41687Ectocarpus subulatus male Bft15bexonScaffold_372 14210..14342 +
EsuBft2058_3a-0001-exonagat-exon-41688Ectocarpus subulatus male Bft15bexonScaffold_372 14640..14791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2058_3a-0001-cdsEsuBft2058_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 13297..13374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2058_3a-0001EsuBft2058_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 13297..14791 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2058_3a-0001 ID=EsuBft2058_3a-0001|Name=EsuBft2058_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=363bp|location=Sequence derived from alignment at Scaffold_372:13297..14791+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCACACAAGATGGTCTTGGATGCCGTCCGGTTGGCCTGCGTTTT
CTCTTTGCTTGTTGTTGGAAGTGACACGCTCTACGCGAGGAGTGAACCCG
GGGAGCCGCCCGAGTACTGCACCGTCTTCCACCACATGGTGAAAAGCGCG
GGCTCAACCGTCAAGAGCTTGCTTCACAGTGGTACACGCAAGGAAGGTCT
CCCGAGACCAGGTTCTGGGTCCAGAAAAGACGCGTCCGCTCATTGGGAGA
TGCGGTACAGTCCCGAGGGCCGAAGGCTGACTTGGCTTCAGTGTGGAAAG
TACCCCACGGGGGACACTTTCCTTTCTGTATTGAAGCCAAGTCAGCAAAT
TTTCCAGTACTAG
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protein sequence of EsuBft2058_3a-0001

>EsuBft2058_3 ID=EsuBft2058_3|Name=EsuBft2058_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MPPHKMVLDAVRLACVFSLLVVGSDTLYARSEPGEPPEYCTVFHHMVKSA
GSTVKSLLHSGTRKEGLPRPGSGSRKDASAHWEMRYSPEGRRLTWLQCGK
YPTGDTFLSVLKPSQQIFQY
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mRNA from alignment at Scaffold_372:13297..14791+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2058_3a-0001 ID=EsuBft2058_3a-0001|Name=EsuBft2058_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1495bp|location=Sequence derived from alignment at Scaffold_372:13297..14791+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCACACAAGATGGTCTTGGATGCCGTCCGGTTGGCCTGCGTTTT
CTCTTTGCTTGTTGTTGGAAGTGACACGGTGAGTTCTGGGGCTGCTGGCT
GCCGGAAACACGGTTGGTTGATGCTACGACGGTGTTGTGACGAAAACGAC
GTCGACGCTAACGGGTGGAATATCGTAGTGTTTTGCTTGGAGGCACTGGA
AGCATTTGAAACCAACCCGTGGGAGATAAGTACCTTGCCGTACCTTGCCC
CGCCCCCTCTCAAGCCTCGTCCTGCTGTTGTTGGTCACTTTGTTGCTAGA
AAGAGGCGAAAGGGAGAGCTTGTGTCTCGCCCTCGCTGTTCCTACTCCCA
TCCGTGTATGCCTGCTCGGAACGTGGAGTTTATCTGCTAAAGAACTGGCT
GGCATGGCAAGAGCGAAGTACGCGTTCAATCTTAGTGTCTTAATGACCAA
AACCAAGGGTGACCGATGAGCTCTTACGGAGACGCTGGAGGGTTCCGACT
GCGATGGCCTAAAACATGCCTCAAAGTTGATCATGACATCCGAACGGTTG
ACGCTGAAGCAACAAACGTCTATTATACTTTTTGCGCAGTCAGTGCGGTC
GTGAGAAAAAGTTAGCCGCCATTTTTTTCACAAGCTTCTGTCCGCCTGCG
AGAGCGGGTGCTGACTAGCGGACTAGCTAACTAGTTTTCGCAGGTTGTGG
AAAGCCTTCCGCTTGCGTGCACCCGGTAGGGCCGTGACACTTGTTGGTGA
GTGGTCTTGAGAACACGGGTAAGGTAGGCCACACCTTGTTGTACTGCTGT
ACTGCTGTATAACCACTCCTTGCAACTTGATGGAAGAGTTAAGAGGCGCA
ACCAACCATTCTCTGTTGATGCTGCTGTTTCGTCGATTTTTTCTCCTTGC
TCCTCGTCTGCAGCTCTACGCGAGGAGTGAACCCGGGGAGCCGCCCGAGT
ACTGCACCGTCTTCCACCACATGGTGAAAAGCGCGGGCTCAACCGTCAAG
AGCTTGCTTCACAGTGGTACACGCAAGGAAGGTCTCCCGAGACCAGGTGC
GACTTATCATCTTGTGGTGGTAACATATATACGTACAGTTGTACCGTATG
CTAATTACACCGCATCCGTATGCATGTACTAGATATAAACGTGTAGTCTG
AGTACAAACACAGAAAGTATCAATCGGAAGATCGAACCGCTTCTACGCTT
CTACGCACGTGTGTCAATGGTGGCTTTTGGTGTTGCATCAGTTATCAAGC
AACTACTGTCCGGTGTTCCGCGGCCACCTCCGGAAACAAATAAATTCGTT
GACCCCCCGAGTAAGTACCCAGTCCAGCATTAGTTACGTACAGGTTCTGG
GTCCAGAAAAGACGCGTCCGCTCATTGGGAGATGCGGTACAGTCCCGAGG
GCCGAAGGCTGACTTGGCTTCAGTGTGGAAAGTACCCCACGGGGGACACT
TTCCTTTCTGTATTGAAGCCAAGTCAGCAAATTTTCCAGTACTAG
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Coding sequence (CDS) from alignment at Scaffold_372:13297..14791+

>EsuBft2058_3a-0001 ID=EsuBft2058_3a-0001|Name=EsuBft2058_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_372:13297..14791+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCACACAAGATGGTCTTGGATGCCGTCCGGTTGGCCTGCGTTTT
CTCTTTGCTTGTTGTTGGAAGTGACACGCTCTACGCGAGGAGTGAACCCG
GGGAGCCGCCCGAGTACTGCACCGTCTTCCACCACATGGTGAAAAGCGCG
GGCTCAACCGTCAAGAGCTTGCTTCACAGTGGTACACGCAAGGAAGGTCT
CCCGAGACCAGGTTCTGGGTCCAGAAAAGACGCGTCCGCTCATTGGGAGA
TGCGGTACAGTCCCGAGGGCCGAAGGCTGACTTGGCTTCAGTGTGGAAAG
TACCCCACGGGGGACACTTTCCTTTCTGTATTGAAGCCAAGTCAGCAAAT
TTTCCAGTACTAG
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