EsuBft2058_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2058_2a-0001
Unique NameEsuBft2058_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:17492..19742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G716
ProteomeIdEsuBft2058_2
Protein domainsIPR005331
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length71
Hectar predicted targeting categoryother localisation
Evalue1.44e-14
EggNOG OGs2CYGC@1|root,2S47N@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionSulfotransferase family
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0008146
GO0016021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2058_2aEsuBft2058_2aEctocarpus subulatus male Bft15bgeneScaffold_372 17492..19742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2058_2a-0001EsuBft2058_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 17492..19722 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2058_2a-0001-exonagat-exon-41686Ectocarpus subulatus male Bft15bexonScaffold_372 17492..17502 +
EsuBft2058_2a-0001-exonagat-exon-41684Ectocarpus subulatus male Bft15bexonScaffold_372 17557..17683 +
EsuBft2058_2a-0001-exonagat-exon-41685Ectocarpus subulatus male Bft15bexonScaffold_372 18050..18190 +
EsuBft2058_2a-0001-exonagat-exon-41682Ectocarpus subulatus male Bft15bexonScaffold_372 18259..18324 +
EsuBft2058_2a-0001-exonagat-exon-41683Ectocarpus subulatus male Bft15bexonScaffold_372 18633..18692 +
EsuBft2058_2a-0001-exonEsuBft2058_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 19438..19742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2058_2a-0001-cdsEsuBft2058_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 17492..17502 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2058_2a-0001-exonagat-three_prime_utr-7929Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 19723..19742 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2058_2a-0001 ID=EsuBft2058_2a-0001|Name=EsuBft2058_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=710bp|location=Sequence derived from alignment at Scaffold_372:17492..19742+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATGCGCATATCCCTTGGAGGTTGAGAGAAGGGAATGCCAGTACTT
CACGATGTTGAGACACCCCATCGATCGCCTGGTGTCGGCGTTTTTCTACT
GCCCAACGGACCACGATGTCCAATTGAGGCCTCGGAAGTGGTGTGGGCAC
GAGGAGCACCCGGTGCCGGCGACCGAGCGCCTGCTGGACTTCGCGCAGGA
AAGCTGGCGGAATCAGGCGTTCAAGCAGATGACGTTCGGCTTGTACTGCC
CCCCTGACACCTTCTGCGAAGTGGCGGAGGTGAACAACGTGTCGCAGTGT
GAGACTTTTGTCGTGGGCGTTGGTTCGTTGGACGGGCTACGCGAGGTTGG
TCCACCGCAGATGCTGGACGAACCCGGTATTCTAGATGTCCTCCAGCAGG
TCCAGGACATCTTGGCGGGATATACGGCAGTGGGTATTATGGAACACTGG
GACCTGTCTATGCAGCTCTTCAACGCGCGCGTGCGGTCACCCGTGCGTGA
GTGGAACGTGTTCAAGCAGAGAAATCCGGGGGTAATGACCGGGCTTCGCG
ATGAGGTGCTTCAATGGGCTCACAAAAGCCCGGCCATTCACCGCGTAATA
GGAACAGATATGTTGTTGTACTCCTTTGGGCTGTCCATTTTCAAGCAGCA
GACGACTGCATCACTTGGTACGAATTGGCTCGAGATGTGATCTTCCTATG
TCACGACCGC
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protein sequence of EsuBft2058_2a-0001

>EsuBft2058_2 ID=EsuBft2058_2|Name=EsuBft2058_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=229bp
MLCAYPLEVERRECQYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGH
EEHPVPATERLLDFAQESWRNQAFKQMTFGLYCPPDTFCEVAEVNNVSQC
ETFVVGVGSLDGLREVGPPQMLDEPGILDVLQQVQDILAGYTAVGIMEHW
DLSMQLFNARVRSPVREWNVFKQRNPGVMTGLRDEVLQWAHKSPAIHRVI
GTDMLLYSFGLSIFKQQTTASLGTNWLEM
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mRNA from alignment at Scaffold_372:17492..19742+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2058_2a-0001 ID=EsuBft2058_2a-0001|Name=EsuBft2058_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2251bp|location=Sequence derived from alignment at Scaffold_372:17492..19742+ (Ectocarpus subulatus male Bft15b)
ATGTTATGCGCGTATATGGAACGACCGTAACGTTTGATTTCCGTTTTCGT
CTCCCGTGATCCCAGATATCCCTTGGAGGTTGAGAGAAGGGAATGCCAGT
ACTTCACGATGTTGAGACACCCCATCGATCGCCTGGTGTCGGCGTTTTTC
TACTGCCCAACGGACCACGATGTCCAATTGAGGCCTCGGAAGGTATGTGT
TGTAACGTCCCGCCGATAGCATGGCGGCAGGCTCCGCCGAACTTGAGTAC
AGTCGAGGCTCCGATATTCGAGTGTACCTTGTAAGAGGGGGCTCCGATGT
AAGAGGGTCGAAATCTGTTGCCACGGACTCGACCCGCTATACTGTAGTGA
AGTTGGGTACCCTCTGAGAGGTGACTCCGATTTATGGGGGTCGAGGCCCT
CTGTCACGCCACCCTCATACATGGGGTCGCGGTTTCGGCGTTTTGTCATC
TGTAGCATATATCACGGCCGCCATTAAGCTTCGGTCGTCGTACCGTTCAC
CCTCTAGGGGTCAAACTAACGGTGAAGCACGCTACCGACGCACGCGACAC
GTTCGCAGTGGTGTGGGCACGAGGAGCACCCGGTGCCGGCGACCGAGCGC
CTGCTGGACTTCGCGCAGGAAAGCTGGCGGAATCAGGCGTTCAAGCAGAT
GACGTTCGGCTTGTACTGCCCCCCTGACACCTTCTGCGAAGTGGCGGAGG
TGAGGAGTGATCTGGTTACTACCTCGTGAACGTGTTCTGCTCGCCTCTGT
GACTTGAGCCTAGACAGGTGAACAACGTGTCGCAGTGTGAGACTTTTGTC
GTGGGCGTTGGTTCGTTGGACGGGCTACGCGAGGTATTACTAGGAAATGT
AAATCGTTTATTCAGATTGCATTTTTTTTCTTCTTGGTTCGTTTATATTC
GCTGGGGTCTTCGAATCAAGAAGAAGTCAGCTGTGCGAGCTGTTCGAGCT
ACAGAAACGTCACTAATCGCACCTGGCAGCTGATTCACACCAACACATGA
TTTGCTTTCATCTTGCATCACCCCTTGATGACACTGTGCTCTCATGAGCC
CACTCTTGAGGGATCACTTGCCGTATCAATATTCTAATGTTTGTTGCGTG
CGTTTATCTGTACGTGTGTGGCTCATCTGGGGTTGCCGCAGGTTGGTCCA
CCGCAGATGCTGGACGAACCCGGTATTCTAGATGTCCTCCAGCAGGTCCA
GGTAGGGCTTGCAAATCCGCTACTTGTTTCCCGGTATACACAATTAGCGC
CCGCGTCAAGAAACGTCAGTTTGGGATCGAGGCTCAATTTCTTATTTCTT
CGTCACCACCACCGAGCACAGGCCATGATACAGAGTTTGTTTCGTATAGG
ATTCACGGCTGAGGTGTGTTTGTTGGTATATTTTTGTCGATTATCGCCAG
TATCTGAGCCTCTGTTTCTAAAAGGTTGGCTTGCTTCTTGATCACTGGCC
CTTACTGTAGTGTTGCTCGTAACAAGGAGTAGGGAACACAGTGCACGGGG
GAGTCAGCCGTAAGATATCCTAGGCTGTTTTGGGCCGCCTTACACACACA
GCGATTTTGCTTCCAAATTTCCATTTTTTTCGGTGCCGGTCGTCCAAATT
TTCCAAATCTCCAAGTTTTCCCTGGGCCGCACAAAATCGAGGCTCAACGG
TCTACGGATTTGGATAATTGGAAATTTGGAAGCGAAAAATCTGCTGTATA
TAACGGCCCTTACAGGATGCTCAGGAGCCCGAAGTTGCGCATTCTCCCAG
CAAAGAGGGCATGTCTTACCGTAGGCAAGTGTGAATCACCCTTCCAGTGG
TGCATATGCTGTGTTCAAAGGCACCTAACCCTACTTTTTGCACAAGTGGC
TCCTACGGTACCCATGATATTATCGGCGTCTTGGCCGCTAAACCTATACC
ACTAGGAAGTGAGACGTGCTTGTGGCTGTATCTCGGACGCTCGCAGGACA
TCTTGGCGGGATATACGGCAGTGGGTATTATGGAACACTGGGACCTGTCT
ATGCAGCTCTTCAACGCGCGCGTGCGGTCACCCGTGCGTGAGTGGAACGT
GTTCAAGCAGAGAAATCCGGGGGTAATGACCGGGCTTCGCGATGAGGTGC
TTCAATGGGCTCACAAAAGCCCGGCCATTCACCGCGTAATAGGAACAGAT
ATGTTGTTGTACTCCTTTGGGCTGTCCATTTTCAAGCAGCAGACGACTGC
ATCACTTGGTACGAATTGGCTCGAGATGTGATCTTCCTATGTCACGACCG
C
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Coding sequence (CDS) from alignment at Scaffold_372:17492..19742+

>EsuBft2058_2a-0001 ID=EsuBft2058_2a-0001|Name=EsuBft2058_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=690bp|location=Sequence derived from alignment at Scaffold_372:17492..19742+ (Ectocarpus subulatus male Bft15b)
ATGTTATGCGCATATCCCTTGGAGGTTGAGAGAAGGGAATGCCAGTACTT
CACGATGTTGAGACACCCCATCGATCGCCTGGTGTCGGCGTTTTTCTACT
GCCCAACGGACCACGATGTCCAATTGAGGCCTCGGAAGTGGTGTGGGCAC
GAGGAGCACCCGGTGCCGGCGACCGAGCGCCTGCTGGACTTCGCGCAGGA
AAGCTGGCGGAATCAGGCGTTCAAGCAGATGACGTTCGGCTTGTACTGCC
CCCCTGACACCTTCTGCGAAGTGGCGGAGGTGAACAACGTGTCGCAGTGT
GAGACTTTTGTCGTGGGCGTTGGTTCGTTGGACGGGCTACGCGAGGTTGG
TCCACCGCAGATGCTGGACGAACCCGGTATTCTAGATGTCCTCCAGCAGG
TCCAGGACATCTTGGCGGGATATACGGCAGTGGGTATTATGGAACACTGG
GACCTGTCTATGCAGCTCTTCAACGCGCGCGTGCGGTCACCCGTGCGTGA
GTGGAACGTGTTCAAGCAGAGAAATCCGGGGGTAATGACCGGGCTTCGCG
ATGAGGTGCTTCAATGGGCTCACAAAAGCCCGGCCATTCACCGCGTAATA
GGAACAGATATGTTGTTGTACTCCTTTGGGCTGTCCATTTTCAAGCAGCA
GACGACTGCATCACTTGGTACGAATTGGCTCGAGATGTGA
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