EsuBft2050_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2050_9a-0001
Unique NameEsuBft2050_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:684..4593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog159749.K0S7H9
ProteomeIdEsuBft2050_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length225
Hectar predicted targeting categoryother localisation
Evalue1.59e-17
EggNOG OGs2D06V@1|root,2SD1E@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_9aEsuBft2050_9aEctocarpus subulatus male Bft15bgeneScaffold_376 684..4593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_9a-0001EsuBft2050_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 684..4593 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_9a-0001-exonagat-exon-33064Ectocarpus subulatus male Bft15bexonScaffold_376 684..1569 -
EsuBft2050_9a-0001-exonagat-exon-33062Ectocarpus subulatus male Bft15bexonScaffold_376 1783..2021 -
EsuBft2050_9a-0001-exonEsuBft2050_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 2103..2907 -
EsuBft2050_9a-0001-exonagat-exon-33065Ectocarpus subulatus male Bft15bexonScaffold_376 3377..3390 -
EsuBft2050_9a-0001-exonagat-exon-33063Ectocarpus subulatus male Bft15bexonScaffold_376 4285..4593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_9a-0001-cdsEsuBft2050_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 684..1569 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2050_9a-0001 ID=EsuBft2050_9a-0001|Name=EsuBft2050_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2253bp|location=Sequence derived from alignment at Scaffold_376:684..4593- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCAGCCGCTTACCCGCAGCCACAGACCAGTGGGAGAAGACGTC
CATGCCCGTGTGCTATCCAGAGAAGAACACTGGCAAGTGGCGGTTGTTCC
TCAACTTCACAAAGCGGAAGGGAGACAAGGCGAAAAGACAGCAGAGTTCA
CGGTTTGCTTCTCGAGAGGCAGCGCTTGCCGGCGTCTTGGACTTCAGGAC
AGGCGACGCCGTACAGCCATCGCGGCAAGCTCTACAAGCGCACGATGAGA
GATCCAGCCCCATCCTCAGCAGCTGTGGCGGCAGCGACTGCGCTTCCAGC
AGGCAAGTCGCGCTCTCACAAGTCCTCGGCAAGCTAAACGCCGTGGAGGA
AAGGAAGTTCAAGCGACTGCGGCTGGCCGGTTCGGACGCGACCCGCGCAG
GCTTCACGCTAAAGTCGACGCTTTCCAGGCGCGAGAGGTGTTTGGTGGCC
CGGGTCTGGAGCAAGAGGGAAGGAAAGCTTCGACGGGACTTCGACAAGCG
GGGCTCCTATCTCGGCAACCGGATCTACGAGCTGACATCGCGGAGCGAGA
GCAACGAGCAGCACATTCGGCGTATTGAGGCAGCTATGGCGGAGCAAGAC
CTCGCGAGTCTTCTCGCCCCTCTCCCCCCCTCGCCCATCGAAGGAAATGC
AGACGTGGACGCACGGGCGTGTACCGAGGGCGAGGACAACCAGTACAAGG
AGGAAGTGTCCGCCACCCAAGCAAACCGCTTGTGGTATCAAGGGCACTCG
GCGTTGACGGTGTTGAAGGAGGAGCGGAAGCGCGACCTGCGGCAACTGGA
ACTCACGCAGCAGGCGAAGGCCTTGTCGGATGAGCCGTACACGACGATCC
CAGCGGTGAAGGCAGCAGAGGCCAAACGGTTTGAGCTGTTGAACGAGGCC
TCACGTCGTCCACACCAGTCGTCGCGCTTGCGGATCGCGGCGAGAGTAAA
CTCCGCTGGCTCGCGGGTTTACGCGGCATCGACAATCCTGGGGTGGCTCA
GGGACTTGCGGGGGCACGGTGGTTTCAAGCGAGATTCAAGGGGGGTGCAC
GAGTGGGACTGGATCATGTCGGAAGAGGACCTCAAGGATGAGCTCATCAA
GTGGATGAGGACACAGAAGCGCCTTACGGTGAACCTTCCCGTGTCCATGG
CCACAACCCACTCCTGGATGATCGCGCTGGGGTGCAAGTACGAGCGGGCT
ACGAAGTCTTTCTACACGGACGGCCACGAGAAGAAGGACGTGGTGGTGTA
CCGCGGCAAGTACATCGACGTGAAGCGGAAGCTCGCCCTTCGGCAACCGT
TGTGGGTGCGAGTTCAACGAGACACTCTGTTGCCGGAGGAGCTTCAGCGG
CTTGATGGCATCAAAGGGAAGGTGCGCCACATCGGACAGGACGAGAGTCT
CTATAAGGCGTATGCGCGCGAGGGCAAGGAGTGGGTTGTCCAAGGGGTAC
GCGGGTTACGGAAAAAAACCGAGGGCCCGGGAGAGATGGTGTCTGCCTTT
CAAGATGAGAGGCACGGCTTTGGCTTGCCGTTGACGGACGACGTGCTGCA
GGCGGTGAACGCGCGTCGCAAGGAGAAGGGCAAGGAAGTCCTGACACGAA
GCCCTGGCCTGCGGTTTCTCCAGTACGGGAAGAACAAGGATGGATACTGG
GGATACGACGAGTTCAAGGAACAGATCGAGGACGTCTTGGACGTCTTGGA
CGTCTTTGAACCCGACATGCAAGTGGTGGTTGAGATCGACCACTCGTCGG
GGCACACAAGGCAGCGGGAGGATGGATTGCATGTGGGGAACATGAATGTC
AAGTACGGGGGGAAGCAAAAGGTGTTGCGGGATACAGTCATGACAGAGGG
GTGTTTGGGACCGGAAGAGGCGAAGATGTACCTCTCCAACGGTAAGTGGA
GCACGGAGTTCACCGAGGGGGCAGAGGTCTACGACATGAAGCTCAAGGTT
GGCGACACACAGACCAGCACGTTTGCGGCAGGTTCTCCACCTCCCTTTTA
CGAGTGGGATGCGCCGCGCAAAGATGTGAAGGTCGCGCGCAAGGCTAAGC
GCAAGAGCAAAGCGGGAGCGGGGGTTGGCGCAGGCGATGTGGCGGCTGAT
GGGGCTGGAACAAAGCCTAGGGATAAGATTAAGGAAGGGTACGAAGGGAA
GGCAAAGGGCTCGAAGCAGTACCTGTGGGAATGGGGATGGTGGAAAGACG
GGATGTGGGGATCGCTGACGAGAAAAACATCGAGAAAGTCTTGCAGGCAC
TGA
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protein sequence of EsuBft2050_9a-0001

>EsuBft2050_9 ID=EsuBft2050_9|Name=EsuBft2050_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=750bp
MASSRLPAATDQWEKTSMPVCYPEKNTGKWRLFLNFTKRKGDKAKRQQSS
RFASREAALAGVLDFRTGDAVQPSRQALQAHDERSSPILSSCGGSDCASS
RQVALSQVLGKLNAVEERKFKRLRLAGSDATRAGFTLKSTLSRRERCLVA
RVWSKREGKLRRDFDKRGSYLGNRIYELTSRSESNEQHIRRIEAAMAEQD
LASLLAPLPPSPIEGNADVDARACTEGEDNQYKEEVSATQANRLWYQGHS
ALTVLKEERKRDLRQLELTQQAKALSDEPYTTIPAVKAAEAKRFELLNEA
SRRPHQSSRLRIAARVNSAGSRVYAASTILGWLRDLRGHGGFKRDSRGVH
EWDWIMSEEDLKDELIKWMRTQKRLTVNLPVSMATTHSWMIALGCKYERA
TKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLLPEELQR
LDGIKGKVRHIGQDESLYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAF
QDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYW
GYDEFKEQIEDVLDVLDVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNV
KYGGKQKVLRDTVMTEGCLGPEEAKMYLSNGKWSTEFTEGAEVYDMKLKV
GDTQTSTFAAGSPPPFYEWDAPRKDVKVARKAKRKSKAGAGVGAGDVAAD
GAGTKPRDKIKEGYEGKAKGSKQYLWEWGWWKDGMWGSLTRKTSRKSCRH
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mRNA from alignment at Scaffold_376:684..4593-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2050_9a-0001 ID=EsuBft2050_9a-0001|Name=EsuBft2050_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3910bp|location=Sequence derived from alignment at Scaffold_376:684..4593- (Ectocarpus subulatus male Bft15b)
ATGGCTTCCAGCCGCTTACCCGCAGCCACAGACCAGTGGGAGAAGACGTC CATGCCCGTGTGCTATCCAGAGAAGAACACTGGCAAGTGGCGGTTGTTCC TCAACTTCACAAAGCGGAAGGGAGACAAGGCGAAAAGACAGCAGAGTTCA CGGTTTGCTTCTCGAGAGGCAGCGCTTGCCGGCGTCTTGGACTTCAGGAC AGGCGACGCCGTACAGCCATCGCGGCAAGCTCTACAAGCGCACGATGAGA GATCCAGCCCCATCCTCAGCAGCTGTGGCGGCAGCGACTGCGCTTCCAGC AGGCAAGTCGTAAATTGGGTACACACACAATCATGTTTCTCAATTTTCAA ATCGGTGCCGTTCGTAGCAGCAGGCTGCGGACATCGCGAGTGGTCGAAAG CGCACGCTGCATGCGTACACTACAGCAGGCTTTGCTGCGCGTGGCACTCG CTCTCGTTGTTGCCTACTGTAAGCAAGGGAGGGGGAGTAACATATTTGGA AGCTTGCAACGAGTGCCACCTCTTGTGAGAGGTTGCTGGTGTCCAAACCT TGATTTTTTAAATTTCGCAACGGCTATTATTTTCGTCTTCCACAAACAAA CCGCGCCGTGCTGTTGCTGCTGCTGCTGCCGCGGCAGCGGCGACGGCGGC GACGGCGGCCAGTATCTATACGTGAGGGTACTACTTGCAGCTCTCGAAAG TACTCATTTTCACTACACCGTATCGCGATAATTTTGTTTTTCCCATATGT AGCATTTTCCATATTTTTCGGTTCAACGTGCACCGGGTGCAAGAAGCTGA GCTGACACAACACTCACGTACAAGACTGCGCGTGTCATGTGCTGGCTTGC CGGTCCCGATGTTGTACTCACCGGTGCTACAAGCGCTGTTTGAACGCACC ATTCACACCTTTATGCACTCTTCAACTGCTGTCTATTTAAACCTCTATGC CTACTGCTATGCGGGCGCAGCTCCCAGTGGGGCCTTACAGATGCTCGTCA CAAGTGTAATCAGTCGACCAAATTTCCACATGCACGTGCTTCGCGATCAT CACATATTGACAGTACTGGACCCAGGCAACACTACAGCAGGAGTTATCGT TTGTTTTAGTAATTCATCCTTGTGTATTCTCTGCATATACTGCTGCCGTG ATGCATTGCTGCGGGCCGATCACACTCCCTGCACGAATACAAAGCCCCTG TAGGCGCTCTCACAAGTGTAATCAGTCGACCAAATTTCCACATGCACGTG GGTCGCCATCATCACATATTGACAGTACCGGACCCAGGCGATACTACAGC AGTAGATATGGTTTTGTTTTAGTTCTTTATCTTCGTGTGCGTTCTGCATA TACTCTGCTGCAGTGGTGCCCTGCTGCGGGCCAAAAACACTCCCTGCACG AATACAACTACAGTCGACATCTGTGCTCGCGATCCCCTTCAACTGATCCA AACATCCATGCACCTGCGCCGCATGTTACTTCATCTGCCTTTTCCTTAAA AAAATTACCGGCTGTACTGCCGATACATACATCAACATATACCGGGAGCG GGATCAGATAGGGCTCGCTGTGCTTTGCAGTGATCTTTTCCTGTCAAACT TCGCTGCTGCTGTCGTATGAAAATGTTTCACACGAGCTGACACCCCACCC GAAATCCCAATTTCACACAGGAAAATCGCGCAACAGCCTCGGCAAGCTAA ACGCCGTGGAGGAAAGGAAGTTCAAGCGACTGCGGCTGGCCGGTTCGGAC GCGACCCGCGCAGGCTTCACGCTAAAGTCGACGCTTTCCAGGCGCGAGAG GTGTTTGGTGGCCCGGGTCTGGAGCAAGAGGGAAGGAAAGCTTCGACGGG ACTTCGACAAGCGGGGCTCCTATCTCGGCAACCGGATCTACGAGCTGACA TCGCGGAGCGAGAGCAACGAGCAGCACATTCGGCGTATTGAGGCAGCTAT GGCGGAGCAAGACCTCGCGAGTCTTCTCGCCCCTCTCCCCCCCTCGCCCA TCGAAGGAAATGCAGACGTGGACGCACGGGCGTGTACCGAGGGCGAGGAC AACCAGTACAAGGAGGAAGTGTCCGCCACCCAAGCAAACCGCTTGTGGTA TCAAGGGCACTCGGCGTTGACGGTGTTGAAGGAGGAGCGGAAGCGCGACC TGCGGCAACTGGAACTCACGCAGCAGGCGAAGGCCTTGTCGGATGAGCCG TACACGACGATCCCAGCGGTGAAGGCAGCAGAGGCCAAACGGTTTGAGCT GTTGAACGAGGCCTCACGTCGTCCACACCAGTCGTCGCGCTTGCGGATCG CGGCGAGAGTAAACTCCGCTGGCTCGCGGGTTTACGCGGCATCGACAATC CTGGGGTGGCTCAGGGACTTGCGGGGGCACGGTGGTTTCAAGCGAGATTC AAGGGGGGTGCACGAGTGGGACTGGATCATGTCGGAAGAGGACCTCAAGG ATGAGCTCATCAAGTGGATGAGGACACAGAAGCGCCTTACGGTGAAGGAC GTCCAGAACTACATCAACTAGTGGCGCTTCGCGAACGAGATCGGGGATTT ATCCAGACTCCTTTCGTACCAGGTGAACCTTCCCGTGTCCATGGCCACAA CCCACTCCTGGATGATCGCGCTGGGGTGCAAGTACGAGCGGGCTACGAAG TCTTTCTACACGGACGGCCACGAGAAGAAGGACGTGGTGGTGTACCGCGG CAAGTACATCGACGTGAAGCGGAAGCTCGCCCTTCGGCAACCGTTGTGGG TGCGAGTTCAACGAGACACTCTGTTGCCGGAGGAGCTTCAGCGGCTTGAT GGCATCAAAGGGTCCGACGGAGGATTTCGGCGCAGAGGTTTACGATTGCG TGGTAGAGGGGCGCGAGTGCATCGAGTTCTAGGTCGATCTCCTGCGGGAC AACTGCTCCGCCGATCGATTCGATGCTCTCCGTGCTGAACGTGGACCGGA AGGCGGGCACTACAGCGTCCGCTTCGAAGAAGCTGCTGCTCTTCCATGCG AGAATGCAAGTGCAAATGCAACAGGAAGGTGCGCCACATCGGACAGGACG AGAGTCTCTATAAGGCGTATGCGCGCGAGGGCAAGGAGTGGGTTGTCCAA GGGGTACGCGGGTTACGGAAAAAAACCGAGGGCCCGGGAGAGATGGTGTC TGCCTTTCAAGATGAGAGGCACGGCTTTGGCTTGCCGTTGACGGACGACG TGCTGCAGGCGGTGAACGCGCGTCGCAAGGAGAAGGGCAAGGAAGTCCTG ACACGAAGCCCTGGCCTGCGGTTTCTCCAGTACGGGAAGAACAAGGATGG ATACTGGGGATACGACGAGTTCAAGGAACAGATCGAGGACGTCTTGGACG TCTTGGACGTCTTTGAACCCGACATGCAAGTGGTGGTTGAGATCGACCAC TCGTCGGGGCACACAAGGCAGCGGGAGGATGGATTGCATGTGGGGAACAT GAATGTCAAGTACGGGGGGAAGCAAAAGGTGTTGCGGGATACAGTCATGA CAGAGGGGTGTTTGGGACCGGAAGAGGCGAAGATGTACCTCTCCAACGGT AAGTGGAGCACGGAGTTCACCGAGGGGGCAGAGGTCTACGACATGAAGCT CAAGGTTGGCGACACACAGACCAGCACGTTTGCGGCAGGTTCTCCACCTC CCTTTTACGAGTGGGATGCGCCGCGCAAAGATGTGAAGGTCGCGCGCAAG GCTAAGCGCAAGAGCAAAGCGGGAGCGGGGGTTGGCGCAGGCGATGTGGC GGCTGATGGGGCTGGAACAAAGCCTAGGGATAAGATTAAGGAAGGGTACG AAGGGAAGGCAAAGGGCTCGAAGCAGTACCTGTGGGAATGGGGATGGTGG AAAGACGGGATGTGGGGATCGCTGACGAGAAAAACATCGAGAAAGTCTTG CAGGCACTGA
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Coding sequence (CDS) from alignment at Scaffold_376:684..4593-

>EsuBft2050_9a-0001 ID=EsuBft2050_9a-0001|Name=EsuBft2050_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2253bp|location=Sequence derived from alignment at Scaffold_376:684..4593- (Ectocarpus subulatus male Bft15b)
ATGGCTTCCAGCCGCTTACCCGCAGCCACAGACCAGTGGGAGAAGACGTC
CATGCCCGTGTGCTATCCAGAGAAGAACACTGGCAAGTGGCGGTTGTTCC
TCAACTTCACAAAGCGGAAGGGAGACAAGGCGAAAAGACAGCAGAGTTCA
CGGTTTGCTTCTCGAGAGGCAGCGCTTGCCGGCGTCTTGGACTTCAGGAC
AGGCGACGCCGTACAGCCATCGCGGCAAGCTCTACAAGCGCACGATGAGA
GATCCAGCCCCATCCTCAGCAGCTGTGGCGGCAGCGACTGCGCTTCCAGC
AGGCAAGTCGCGCTCTCACAAGTCCTCGGCAAGCTAAACGCCGTGGAGGA
AAGGAAGTTCAAGCGACTGCGGCTGGCCGGTTCGGACGCGACCCGCGCAG
GCTTCACGCTAAAGTCGACGCTTTCCAGGCGCGAGAGGTGTTTGGTGGCC
CGGGTCTGGAGCAAGAGGGAAGGAAAGCTTCGACGGGACTTCGACAAGCG
GGGCTCCTATCTCGGCAACCGGATCTACGAGCTGACATCGCGGAGCGAGA
GCAACGAGCAGCACATTCGGCGTATTGAGGCAGCTATGGCGGAGCAAGAC
CTCGCGAGTCTTCTCGCCCCTCTCCCCCCCTCGCCCATCGAAGGAAATGC
AGACGTGGACGCACGGGCGTGTACCGAGGGCGAGGACAACCAGTACAAGG
AGGAAGTGTCCGCCACCCAAGCAAACCGCTTGTGGTATCAAGGGCACTCG
GCGTTGACGGTGTTGAAGGAGGAGCGGAAGCGCGACCTGCGGCAACTGGA
ACTCACGCAGCAGGCGAAGGCCTTGTCGGATGAGCCGTACACGACGATCC
CAGCGGTGAAGGCAGCAGAGGCCAAACGGTTTGAGCTGTTGAACGAGGCC
TCACGTCGTCCACACCAGTCGTCGCGCTTGCGGATCGCGGCGAGAGTAAA
CTCCGCTGGCTCGCGGGTTTACGCGGCATCGACAATCCTGGGGTGGCTCA
GGGACTTGCGGGGGCACGGTGGTTTCAAGCGAGATTCAAGGGGGGTGCAC
GAGTGGGACTGGATCATGTCGGAAGAGGACCTCAAGGATGAGCTCATCAA
GTGGATGAGGACACAGAAGCGCCTTACGGTGAACCTTCCCGTGTCCATGG
CCACAACCCACTCCTGGATGATCGCGCTGGGGTGCAAGTACGAGCGGGCT
ACGAAGTCTTTCTACACGGACGGCCACGAGAAGAAGGACGTGGTGGTGTA
CCGCGGCAAGTACATCGACGTGAAGCGGAAGCTCGCCCTTCGGCAACCGT
TGTGGGTGCGAGTTCAACGAGACACTCTGTTGCCGGAGGAGCTTCAGCGG
CTTGATGGCATCAAAGGGAAGGTGCGCCACATCGGACAGGACGAGAGTCT
CTATAAGGCGTATGCGCGCGAGGGCAAGGAGTGGGTTGTCCAAGGGGTAC
GCGGGTTACGGAAAAAAACCGAGGGCCCGGGAGAGATGGTGTCTGCCTTT
CAAGATGAGAGGCACGGCTTTGGCTTGCCGTTGACGGACGACGTGCTGCA
GGCGGTGAACGCGCGTCGCAAGGAGAAGGGCAAGGAAGTCCTGACACGAA
GCCCTGGCCTGCGGTTTCTCCAGTACGGGAAGAACAAGGATGGATACTGG
GGATACGACGAGTTCAAGGAACAGATCGAGGACGTCTTGGACGTCTTGGA
CGTCTTTGAACCCGACATGCAAGTGGTGGTTGAGATCGACCACTCGTCGG
GGCACACAAGGCAGCGGGAGGATGGATTGCATGTGGGGAACATGAATGTC
AAGTACGGGGGGAAGCAAAAGGTGTTGCGGGATACAGTCATGACAGAGGG
GTGTTTGGGACCGGAAGAGGCGAAGATGTACCTCTCCAACGGTAAGTGGA
GCACGGAGTTCACCGAGGGGGCAGAGGTCTACGACATGAAGCTCAAGGTT
GGCGACACACAGACCAGCACGTTTGCGGCAGGTTCTCCACCTCCCTTTTA
CGAGTGGGATGCGCCGCGCAAAGATGTGAAGGTCGCGCGCAAGGCTAAGC
GCAAGAGCAAAGCGGGAGCGGGGGTTGGCGCAGGCGATGTGGCGGCTGAT
GGGGCTGGAACAAAGCCTAGGGATAAGATTAAGGAAGGGTACGAAGGGAA
GGCAAAGGGCTCGAAGCAGTACCTGTGGGAATGGGGATGGTGGAAAGACG
GGATGTGGGGATCGCTGACGAGAAAAACATCGAGAAAGTCTTGCAGGCAC
TGA
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