EsuBft2050_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2050_8a-0001
Unique NameEsuBft2050_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:7466..8736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005110414.1
ProteomeIdEsuBft2050_8
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl33208|Metazoa
Length84
Hectar predicted targeting categoryother localisation
Evalue2.74e-16
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_8aEsuBft2050_8aEctocarpus subulatus male Bft15bgeneScaffold_376 7466..8736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_8a-0001EsuBft2050_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 7957..8736 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_8a-0001-exonEsuBft2050_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 7466..7539 +
EsuBft2050_8a-0001-exonagat-exon-33061Ectocarpus subulatus male Bft15bexonScaffold_376 7745..7968 +
EsuBft2050_8a-0001-exonagat-exon-33060Ectocarpus subulatus male Bft15bexonScaffold_376 8188..8736 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_8a-0001-exonagat-five_prime_utr-5129Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_376 7466..7539 +
EsuBft2050_8a-0001-exonagat-five_prime_utr-5130Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_376 7745..7956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_8a-0001-cdsEsuBft2050_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 7957..7968 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2050_8a-0001 ID=EsuBft2050_8a-0001|Name=EsuBft2050_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=847bp|location=Sequence derived from alignment at Scaffold_376:7466..8736+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGGTT
TCCCTACTGTCTCACGTAGGCAAGGTCCCCATCCAGATCATCACCAACCA
TCTAAGCGCCTTCTGCGAAGCCAACAGCATCCTCCCGGAGGAACAGTGCG
GATTTCGACCCGGGCGATCCACCGTCGGCATGCTGTTCGTCGTGCGTCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTTTACATGTGCTTGGT
CGACTTGAAGAAGGCGTATATTCGGTGGACCGAGAGATGCTATGGAAGGT
GCTGGCCAGGACCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAAT
TCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCG
GACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCC
ACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCC
GATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAG
GGGAAGACGGAAGCCGAGGGGGGGGAGGAGACACCCCTTGACCGAGTACG
GAGGGCAGTATGGGGGATGCTGTATGACGATGATGCCGACGTCGTATCGA
GGTTTGCAGAAGGACTGGCGAGAATGATGACCATCATTGTTGAGGTGTTC
GGGGAGTTCGGGCTAACGGTGTCGGAAAAAAAGCCGGAAGCGGTCTTGAT
GTGCGCGAAGGACAAAGCCGACTACAACATCACAGCCCCCCCCGCCTCCA
CCGCTGACCATCGNAGTACGGAGGGCAGTATGGGGGATGCTGTATGA
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protein sequence of EsuBft2050_8a-0001

>EsuBft2050_8 ID=EsuBft2050_8|Name=EsuBft2050_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=186bp
MLWKVLARTGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQG
CVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAEGGEETP
LDRVRRAVWGMLYDDDADVVSRFAEGLARMMTIIVEVFGEFGLTVSEKKP
EAVLMCAKDKADYNITAPPASTADHRSTEGSMGDAV
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mRNA from alignment at Scaffold_376:7466..8736+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2050_8a-0001 ID=EsuBft2050_8a-0001|Name=EsuBft2050_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1271bp|location=Sequence derived from alignment at Scaffold_376:7466..8736+ (Ectocarpus subulatus male Bft15b)
TGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGGTT
TCCCTACTGTCTCACGTAGGCAAGGTCCCCATCCAGATCATCACCAACCA
TCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCG
GATTTCGACCCGGGCGATCCACCGTCGGCATGCTGTTCGTCGTGCGTCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTNTAACAACTACAGGG
GGGTTTCCCTACTGTCTCACGTAGGCAAGGTCCCCATCCAGATCATCACC
AACCATCTAAGCGCCTTCTGCGAAGCCAACAGCATCCTCCCGGAGGAACA
GTGCGGATTTCGACCCGGGCGATCCACCGTCGGCATGCTGTTCGTCGTGC
GTCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTTTACATGTGC
TTGGTCGACTTGAAGAAGGCGTATATTCGGTGGACCGAGAGATGCTATGG
AAGGTGCTGGCCAGGACCGGGATTCCCGCGAAGCTGATCAAAGTCATCCG
CCACTTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAGT
GACACAGAGCGTGCGACAAGGATGTGTTCTATCCCCACTGCTGTTCAACA
TCTTCTTNTTTACATGTGCTTGGTCGACTTGAAGAAGGCGTATATTCGGT
GGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGACCGGGATTCCCGCGA
AGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTG
CGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGT
GCGACAAGGATGTGTGCTATCCCCACTGCTGTTCAACATCTTCTTCGCCG
AGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGATGTTGTTCTG
CGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAAGCCGAGGGGGGGGA
GGAGACACCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGCTGTATG
ACGATGATGCCGACGTCGTATCGAGGTTTGCAGAAGGACTGGCGAGAATG
ATGACCATCATTGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGA
AAAAAAGCCGGAAGCGGTCTTGATGTGCGCGAAGGACAAAGCCGACTACA
ACATCACAGCCCCCCCCGCCTCCACCGCTGACCATCGNAGTACGGAGGGC
AGTATGGGGGATGCTGTATGA
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Coding sequence (CDS) from alignment at Scaffold_376:7466..8736+

>EsuBft2050_8a-0001 ID=EsuBft2050_8a-0001|Name=EsuBft2050_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=561bp|location=Sequence derived from alignment at Scaffold_376:7466..8736+ (Ectocarpus subulatus male Bft15b)
ATGCTATGGAAGGTGCTGGCCAGGACCGGGATTCCCGCGAAGCTGATCGA
AGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACG
ACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGA
TGTGTGCTATCCCCACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGA
GGTCGTTGTCATCCGATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGG
TGTGCTTGGAGGAGGGGAAGACGGAAGCCGAGGGGGGGGAGGAGACACCC
CTTGACCGAGTACGGAGGGCAGTATGGGGGATGCTGTATGACGATGATGC
CGACGTCGTATCGAGGTTTGCAGAAGGACTGGCGAGAATGATGACCATCA
TTGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAAAAAAAGCCG
GAAGCGGTCTTGATGTGCGCGAAGGACAAAGCCGACTACAACATCACAGC
CCCCCCCGCCTCCACCGCTGACCATCGNAGTACGGAGGGCAGTATGGGGG
ATGCTGTATGA
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