Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2050_7 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | TRANSMEMBRANE |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 113 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2050_7a-0001 ID=EsuBft2050_7a-0001|Name=EsuBft2050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1132bp|location=Sequence derived from alignment at Scaffold_376:12829..14551+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCTTTTCTCAAAAAGGGACAGCCCAAAAAAAGATATGGAAAAACGACAA
CCCACTTGTTACGCTGTCTTTTTCCAAAAACGAGGTGTTCGATTATTCTC
GGAGGCGTTTGCGTGCGCGCGCCAGCGCGCGCGAACGATTTTTGAATTCT
TGCAGTTCGCGCCGCTTCTCTCTCGCACAAGCGCACAAGCTACATCAGCA
CACCACGCGTATCCACACCGCACACACACCACGAGCCACCGCATACCATG
GATGTCATGAAACTAGACAACGTTCAACCTCTCCCGCTGGAGTTCAACGG
GTATGTCGAGGGCACGTTGGAGTTGCTCCTGGGCGGCAAGGGCCTCTCGC
AGATCAAGCTTCTCAAGCACCTCCAGAACGTGTGCATCGTGTACGCTTGC
TTGGCGGTCAAGCGGAACGCCGGGATCGTCTCCACGGAGGCTAAGTACAA
GGCAGCGGCCAAGGGCTACAAGGACATCGCTGTCCCAGGATTCTTCAAGT
GGCTCAAGGAAAACGGCATAGTGATCAAGCAGGCGTGGCTGACGTTCGAG
GTCATGGGCAGAACAAGTCTGAACGGAGCGCCGGTCCTGTTCACCGACGG
GAAGAAGTTGTGGAAGCGCTTCGACAAGGTCATGCGCGAAATGAAGAAGA
CGTACAACAAAGTGTGGGACAGGTGTGTAGACTCTTGTGTGGTACTGCTG
TATTGCGTGGTACTGCTGTTTTGCTCCGCATTAGTGGTTGAGGCTCGATA
CAACTTTTGGCCCAAATATATCTGCAGTAGCGTGTTGTGTATGCTCCCGA
ATCAGCGGTAAACTACAAGCCCAACATCGGAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN back to topprotein sequence of EsuBft2050_7a-0001 >EsuBft2050_7 ID=EsuBft2050_7|Name=EsuBft2050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MDVMKLDNVQPLPLEFNGYVEGTLELLLGGKGLSQIKLLKHLQNVCIVYA
CLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTF
EVMGRTSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDRCVDSCVVL
LYCVVLLFCSALVVEARYNFWPKYICSSVLCMLPNQR back to topmRNA from alignment at Scaffold_376:12829..14551+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2050_7a-0001 ID=EsuBft2050_7a-0001|Name=EsuBft2050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1723bp|location=Sequence derived from alignment at Scaffold_376:12829..14551+ (Ectocarpus subulatus male Bft15b)
CCCTTTTCTCAAAAAGGGACAGCCCAAAAAAAGATATGGAAAAACGACAA
CCCACTTGTTACGCTGTCTTTTTCCAAAAACGAGGTGTTCGATTATTCTC
GGAGGCGTTTGCGTGCGCGCGCCAGCGCGCGCGAACGATTTTTGAATTCT
TGCAGTTCGCGCCGCTTCTCTCTCGCACAAGCGCACAAGCTACATCAGCA
CACCACGCGTATCCACACCGCACACACACCACGAGCCACCGCATACCATG
GATGTCATGAAACTAGACAACGTTCAACCTCTCCCGCTGGAGTTCAACGG
GTATGTCGAGGGCACGTTGGAGTTGCTCCTGGGCGGCAAGGGCCTCTCGC
AGATCAAGCTTCTCAAGCACCTCCAGAACGTGTGCATCGTGTACGCTTGC
TTGGCGGTCAAGCGGAACGCCGGGATCGTCTCCACGGAGGCTAAGTACAA
GGCAGCGGCCAAGGGCTACAAGGACATCGCTGTCCCAGGATTCTTCAAGT
GGCTCAAGGAAAACGGCATAGTGATCAAGCAGGCGTGGCTGACGTTCGAG
GTCATGGGCAGAACAAGTCTGAACGGAGGTAAGAAAACAAACGCTTCGCG
ACACACCGTGAGACACAACCGACCGCCGCGACAGAGAGAGGCAGGTTTCG
AATGCGTATCCGACCCTCTGCGCCGCTATGGTCTGCTGTTCAACACGATA
TGCGTAACGCCGGATGCAGGGTGTTTGTGTTTGGTCCGCTCAGCGCAAAT
ACATATTTTCAAAGTTGTCACGTGTGTTGACAGGGCAGACAGGCCATCAC
GGTGCGCTGCCTTGACAGAGTCGTGATCCATCAAGTAGGCAGCACCCACA
AAGCCCTCCACCAGAAGTAACTAGGCTGTGTGTAGCGTGTAGTTTGGTGA
CATAGTCTGGGGTGATAAAGCACGCCCGGCTTTGGGCAGCAATCGGTTAT
AAAATGACGACATGACAGCGATGTGCATCCTCCTGCAAAGTCGGTGTAAC
CAGGAAATGTTACCGACACAAAAAGTCTCATGTTGCATCAGGAAACAAAC
GGTTCGGTTAACGTGCTCATGTCATGTCTGCTTTAGTGCTGTAGGGGATG
GAAAGTCCTGTACTGCTGCTGACAGTGAAGTGCTACTGCTGTTCCACTGT
TGTTTGACTTGCCCTGCAGCGCCGGTCCTGTTCACCGACGGGAAGAAGTT
GTGGAAGCGCTTCGACAAGGTCATGCGCGAAATGAAGAAGACGTACAACA
AAGTGTGGGACAGGTGTGTAGACTCTTGTGTGGTACTGCTGTATTGCGTG
GTACTGCTGTTTTGCTCCGCATTAGTGGTTGAGGCTCGATACAACTTTTG
GCCCAAATATATCTGCAGTAGCGTGTTGTGTATGCTCCCGAATCAGCGGT
AAACTACAAGCCCAACATCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNN back to topCoding sequence (CDS) from alignment at Scaffold_376:12829..14551+ >EsuBft2050_7a-0001 ID=EsuBft2050_7a-0001|Name=EsuBft2050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_376:12829..14551+ (Ectocarpus subulatus male Bft15b)
ATGGATGTCATGAAACTAGACAACGTTCAACCTCTCCCGCTGGAGTTCAA
CGGGTATGTCGAGGGCACGTTGGAGTTGCTCCTGGGCGGCAAGGGCCTCT
CGCAGATCAAGCTTCTCAAGCACCTCCAGAACGTGTGCATCGTGTACGCT
TGCTTGGCGGTCAAGCGGAACGCCGGGATCGTCTCCACGGAGGCTAAGTA
CAAGGCAGCGGCCAAGGGCTACAAGGACATCGCTGTCCCAGGATTCTTCA
AGTGGCTCAAGGAAAACGGCATAGTGATCAAGCAGGCGTGGCTGACGTTC
GAGGTCATGGGCAGAACAAGTCTGAACGGAGCGCCGGTCCTGTTCACCGA
CGGGAAGAAGTTGTGGAAGCGCTTCGACAAGGTCATGCGCGAAATGAAGA
AGACGTACAACAAAGTGTGGGACAGGTGTGTAGACTCTTGTGTGGTACTG
CTGTATTGCGTGGTACTGCTGTTTTGCTCCGCATTAGTGGTTGAGGCTCG
ATACAACTTTTGGCCCAAATATATCTGCAGTAGCGTGTTGTGTATGCTCC
CGAATCAGCGGTAA back to top
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