EsuBft2050_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2050_4a-0001
Unique NameEsuBft2050_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:27701..29081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G2A3
ProteomeIdEsuBft2050_4
Protein domainsPTHR24198
Protein domainsIPR020683
Protein domainsIPR002110
Ownerapollo_admin@sb-roscoff.fr
Noteankyrin-3 os:homo sapiens gn:ank3 pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1170
Hectar predicted targeting categoryother localisation
Evalue1.12e-90
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Descriptionspectrin binding
COG categoryI
BRITEko00000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0032414
GO0072659
GO0086070
GO0051924
GO0033365
GO0043231
GO0032386
GO0030424
GO0005515
GO0098590
GO0007399
GO0016020
GO0048468
GO0086019
GO0043232
GO0007165
GO2000021
GO0044422
GO0086004
GO0086001
GO0019899
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_4aEsuBft2050_4aEctocarpus subulatus male Bft15bgeneScaffold_376 27701..29081 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_4a-0001-exonagat-exon-33057Ectocarpus subulatus male Bft15bexonScaffold_376 27701..27831 +
EsuBft2050_4a-0001-exonEsuBft2050_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 27920..28109 +
EsuBft2050_4a-0001-exonagat-exon-33055Ectocarpus subulatus male Bft15bexonScaffold_376 28159..28561 +
EsuBft2050_4a-0001-exonagat-exon-33056Ectocarpus subulatus male Bft15bexonScaffold_376 28636..29081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_4a-0001-cdsEsuBft2050_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 27701..27831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_4a-0001EsuBft2050_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 27701..29081 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2050_4a-0001 ID=EsuBft2050_4a-0001|Name=EsuBft2050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1170bp|location=Sequence derived from alignment at Scaffold_376:27701..29081+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAGGAGACACGATATTCAAACTGTTTGGCCACACCCGAGCAGTG
GGCCGAGTGGCTGAGAGCTCCACTGGAGCATGCGGCAGGAACCGGTAACC
GCGATCTGGTAGATAAGCTGCTGGGAGCCGGGTTGCGCAGGGCAGGGGCA
GGAGGAGACATGAAAGCGAAAACCCTCGACACCGGACATACACCTCTGGA
TCTGGCGGTTGTCGGCGGGAATGAGGCTGCCGCAGAGGCGCTAATCATGG
CTGGGGCGGATATGAACGTGCTCGATGTCAAGAATGACGGCCTGCTGCAC
CTCACGATCACAGGGGGTCATGCGGGATCGAACGGCAATTTCCCCATCCA
CCTCCCTGCTTGCTATGGTTTTGATGAGGTGGCGTTGGTATTGGTCCAGA
AGAGGGTTGACCTGAATTGCGTCAACATCGAACGACGTACTCCCCTCTAT
GTGGCGGTGAGAGAGAACCACGTTTCCACCGTGAAAGTGCTTCTGGCTGA
AGGCGCTGATCCCAACTCCCTCAATTTGCTGCTAATGGCAACGCGCGAGA
ACAAAGCGGCCTCCATCCGAGCGCTGTTGGAAGCCGGAGCCGATATCGAA
CGTCGGACTTCCAGGGAATCAACCCCACTCCATGCCACAGCAGCCTTTGG
CTCATGTGCAGCCATGCTGACTCTTTTGCAACTGGGAGCCAACGTCAACT
CGAAGGAAAATAGAGGCAAACCCCGCCCAAAGGGAAAGGCCGCCATTTCC
GTCGTGATACGATGCATGGCTGAAACTCGCGCAGCTTCTCTCCCGCGCCT
TGAGCATGTTTCCGAGCTACTGGTACCTGCTCCGCAGGACAGGGCCTGGC
GTCGCCGGGGCTTCGTGGTCCTTCGCCGTGCCCTCCCAAACAGGGTGCGG
CTGGCAGTGGAGATCCCTGCAAGAGCAGCTGAGGCTACCGAGCAGCCGCA
GCAACGCCCGAGGAGCCGTGCTAGGACAGGGCAGATGAAGGTCGAGGTGG
AGGTGGATGGGACACATCGAGGCGGTGGTAGAGCAGGTGAGAGGAATGGC
GCACGAGCCGGAATCGAAGTTGTGCGTGAAGGCACCGTCGGTGGGTTCGA
TGGTGTGTCGGCCTGGATGACGGCACTGGCAGAGGAGGAAGTGTTCCGCA
GGATCGTGGGGTTCCTGTAG
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protein sequence of EsuBft2050_4a-0001

>EsuBft2050_4 ID=EsuBft2050_4|Name=EsuBft2050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=389bp
MIEETRYSNCLATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGLRRAGA
GGDMKAKTLDTGHTPLDLAVVGGNEAAAEALIMAGADMNVLDVKNDGLLH
LTITGGHAGSNGNFPIHLPACYGFDEVALVLVQKRVDLNCVNIERRTPLY
VAVRENHVSTVKVLLAEGADPNSLNLLLMATRENKAASIRALLEAGADIE
RRTSRESTPLHATAAFGSCAAMLTLLQLGANVNSKENRGKPRPKGKAAIS
VVIRCMAETRAASLPRLEHVSELLVPAPQDRAWRRRGFVVLRRALPNRVR
LAVEIPARAAEATEQPQQRPRSRARTGQMKVEVEVDGTHRGGGRAGERNG
ARAGIEVVREGTVGGFDGVSAWMTALAEEEVFRRIVGFL
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mRNA from alignment at Scaffold_376:27701..29081+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2050_4a-0001 ID=EsuBft2050_4a-0001|Name=EsuBft2050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1381bp|location=Sequence derived from alignment at Scaffold_376:27701..29081+ (Ectocarpus subulatus male Bft15b)
ATGATCGAGGAGACACGATATTCAAACTGTTTGGCCACACCCGAGCAGTG
GGCCGAGTGGCTGAGAGCTCCACTGGAGCATGCGGCAGGAACCGGTAACC
GCGATCTGGTAGATAAGCTGCTGGGAGCCGGGTCAACGGCGGTGCCGGCT
GGCGGGGTTGTCATGGCAAGACGCTGCTGCATGCGGCTGCTGAGGGCGGC
AACGTGCATGTCATCACAGGTTGCGCAGGGCAGGGGCAGGAGGAGACATG
AAAGCGAAAACCCTCGACACCGGACATACACCTCTGGATCTGGCGGTTGT
CGGCGGGAATGAGGCTGCCGCAGAGGCGCTAATCATGGCTGGGGCGGATA
TGAACGTGCTCGATGTCAAGAATGACGGCCTGCTGCACCTCACGATCACA
GGGGGTCATGTGCGAATCGCGAAGGACCTGTTGCTGAGCGGAGCCAATCC
CATTTCAGGCGGGATCGAACGGCAATTTCCCCATCCACCTCCCTGCTTGC
TATGGTTTTGATGAGGTGGCGTTGGTATTGGTCCAGAAGAGGGTTGACCT
GAATTGCGTCAACATCGAACGACGTACTCCCCTCTATGTGGCGGTGAGAG
AGAACCACGTTTCCACCGTGAAAGTGCTTCTGGCTGAAGGCGCTGATCCC
AACTCCCTCAATTTGCTGCTAATGGCAACGCGCGAGAACAAAGCGGCCTC
CATCCGAGCGCTGTTGGAAGCCGGAGCCGATATCGAACGTCGGACTTCCA
GGGAATCAACCCCACTCCATGCCACAGCAGCCTTTGGCTCATGTGCAGCC
ATGCTGACTCTTTTGCAACTGGGAGCCAACGTCAACTCGAAGGAAAATAG
AGGCAAACCCCGTTACACTTCGCGCGCCGCCATCCCGATGTCGTGGACCT
GTTCTTGAGATGGGGTGCGGACGAGACAGCCGTAGGCCCAAAGGGAAAGG
CCGCCATTTCCGTCGTGATACGATGCATGGCTGAAACTCGCGCAGCTTCT
CTCCCGCGCCTTGAGCATGTTTCCGAGCTACTGGTACCTGCTCCGCAGGA
CAGGGCCTGGCGTCGCCGGGGCTTCGTGGTCCTTCGCCGTGCCCTCCCAA
ACAGGGTGCGGCTGGCAGTGGAGATCCCTGCAAGAGCAGCTGAGGCTACC
GAGCAGCCGCAGCAACGCCCGAGGAGCCGTGCTAGGACAGGGCAGATGAA
GGTCGAGGTGGAGGTGGATGGGACACATCGAGGCGGTGGTAGAGCAGGTG
AGAGGAATGGCGCACGAGCCGGAATCGAAGTTGTGCGTGAAGGCACCGTC
GGTGGGTTCGATGGTGTGTCGGCCTGGATGACGGCACTGGCAGAGGAGGA
AGTGTTCCGCAGGATCGTGGGGTTCCTGTAG
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Coding sequence (CDS) from alignment at Scaffold_376:27701..29081+

>EsuBft2050_4a-0001 ID=EsuBft2050_4a-0001|Name=EsuBft2050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1170bp|location=Sequence derived from alignment at Scaffold_376:27701..29081+ (Ectocarpus subulatus male Bft15b)
ATGATCGAGGAGACACGATATTCAAACTGTTTGGCCACACCCGAGCAGTG
GGCCGAGTGGCTGAGAGCTCCACTGGAGCATGCGGCAGGAACCGGTAACC
GCGATCTGGTAGATAAGCTGCTGGGAGCCGGGTTGCGCAGGGCAGGGGCA
GGAGGAGACATGAAAGCGAAAACCCTCGACACCGGACATACACCTCTGGA
TCTGGCGGTTGTCGGCGGGAATGAGGCTGCCGCAGAGGCGCTAATCATGG
CTGGGGCGGATATGAACGTGCTCGATGTCAAGAATGACGGCCTGCTGCAC
CTCACGATCACAGGGGGTCATGCGGGATCGAACGGCAATTTCCCCATCCA
CCTCCCTGCTTGCTATGGTTTTGATGAGGTGGCGTTGGTATTGGTCCAGA
AGAGGGTTGACCTGAATTGCGTCAACATCGAACGACGTACTCCCCTCTAT
GTGGCGGTGAGAGAGAACCACGTTTCCACCGTGAAAGTGCTTCTGGCTGA
AGGCGCTGATCCCAACTCCCTCAATTTGCTGCTAATGGCAACGCGCGAGA
ACAAAGCGGCCTCCATCCGAGCGCTGTTGGAAGCCGGAGCCGATATCGAA
CGTCGGACTTCCAGGGAATCAACCCCACTCCATGCCACAGCAGCCTTTGG
CTCATGTGCAGCCATGCTGACTCTTTTGCAACTGGGAGCCAACGTCAACT
CGAAGGAAAATAGAGGCAAACCCCGCCCAAAGGGAAAGGCCGCCATTTCC
GTCGTGATACGATGCATGGCTGAAACTCGCGCAGCTTCTCTCCCGCGCCT
TGAGCATGTTTCCGAGCTACTGGTACCTGCTCCGCAGGACAGGGCCTGGC
GTCGCCGGGGCTTCGTGGTCCTTCGCCGTGCCCTCCCAAACAGGGTGCGG
CTGGCAGTGGAGATCCCTGCAAGAGCAGCTGAGGCTACCGAGCAGCCGCA
GCAACGCCCGAGGAGCCGTGCTAGGACAGGGCAGATGAAGGTCGAGGTGG
AGGTGGATGGGACACATCGAGGCGGTGGTAGAGCAGGTGAGAGGAATGGC
GCACGAGCCGGAATCGAAGTTGTGCGTGAAGGCACCGTCGGTGGGTTCGA
TGGTGTGTCGGCCTGGATGACGGCACTGGCAGAGGAGGAAGTGTTCCGCA
GGATCGTGGGGTTCCTGTAG
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