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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G2A3 |
| ProteomeId | EsuBft2050_4 |
| Protein domains | PTHR24198 |
| Protein domains | IPR020683 |
| Protein domains | IPR002110 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | ankyrin-3 os:homo sapiens gn:ank3 pe:1 sv:3 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1170 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.12e-90 |
| EggNOG OGs | COG0666@1|root,KOG4177@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K21440 |
| GOs | GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259 |
| Description | spectrin binding |
| COG category | I |
| BRITE | ko00000,ko04131 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0032414 |
| GO | 0072659 |
| GO | 0086070 |
| GO | 0051924 |
| GO | 0033365 |
| GO | 0043231 |
| GO | 0032386 |
| GO | 0030424 |
| GO | 0005515 |
| GO | 0098590 |
| GO | 0007399 |
| GO | 0016020 |
| GO | 0048468 |
| GO | 0086019 |
| GO | 0043232 |
| GO | 0007165 |
| GO | 2000021 |
| GO | 0044422 |
| GO | 0086004 |
| GO | 0086001 |
| GO | 0019899 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2050_4a-0001 ID=EsuBft2050_4a-0001|Name=EsuBft2050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1170bp|location=Sequence derived from alignment at Scaffold_376:27701..29081+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGATCGAGGAGACACGATATTCAAACTGTTTGGCCACACCCGAGCAGTG
GGCCGAGTGGCTGAGAGCTCCACTGGAGCATGCGGCAGGAACCGGTAACC
GCGATCTGGTAGATAAGCTGCTGGGAGCCGGGTTGCGCAGGGCAGGGGCA
GGAGGAGACATGAAAGCGAAAACCCTCGACACCGGACATACACCTCTGGA
TCTGGCGGTTGTCGGCGGGAATGAGGCTGCCGCAGAGGCGCTAATCATGG
CTGGGGCGGATATGAACGTGCTCGATGTCAAGAATGACGGCCTGCTGCAC
CTCACGATCACAGGGGGTCATGCGGGATCGAACGGCAATTTCCCCATCCA
CCTCCCTGCTTGCTATGGTTTTGATGAGGTGGCGTTGGTATTGGTCCAGA
AGAGGGTTGACCTGAATTGCGTCAACATCGAACGACGTACTCCCCTCTAT
GTGGCGGTGAGAGAGAACCACGTTTCCACCGTGAAAGTGCTTCTGGCTGA
AGGCGCTGATCCCAACTCCCTCAATTTGCTGCTAATGGCAACGCGCGAGA
ACAAAGCGGCCTCCATCCGAGCGCTGTTGGAAGCCGGAGCCGATATCGAA
CGTCGGACTTCCAGGGAATCAACCCCACTCCATGCCACAGCAGCCTTTGG
CTCATGTGCAGCCATGCTGACTCTTTTGCAACTGGGAGCCAACGTCAACT
CGAAGGAAAATAGAGGCAAACCCCGCCCAAAGGGAAAGGCCGCCATTTCC
GTCGTGATACGATGCATGGCTGAAACTCGCGCAGCTTCTCTCCCGCGCCT
TGAGCATGTTTCCGAGCTACTGGTACCTGCTCCGCAGGACAGGGCCTGGC
GTCGCCGGGGCTTCGTGGTCCTTCGCCGTGCCCTCCCAAACAGGGTGCGG
CTGGCAGTGGAGATCCCTGCAAGAGCAGCTGAGGCTACCGAGCAGCCGCA
GCAACGCCCGAGGAGCCGTGCTAGGACAGGGCAGATGAAGGTCGAGGTGG
AGGTGGATGGGACACATCGAGGCGGTGGTAGAGCAGGTGAGAGGAATGGC
GCACGAGCCGGAATCGAAGTTGTGCGTGAAGGCACCGTCGGTGGGTTCGA
TGGTGTGTCGGCCTGGATGACGGCACTGGCAGAGGAGGAAGTGTTCCGCA
GGATCGTGGGGTTCCTGTAG back to topprotein sequence of EsuBft2050_4a-0001 >EsuBft2050_4 ID=EsuBft2050_4|Name=EsuBft2050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=389bp
MIEETRYSNCLATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGLRRAGA
GGDMKAKTLDTGHTPLDLAVVGGNEAAAEALIMAGADMNVLDVKNDGLLH
LTITGGHAGSNGNFPIHLPACYGFDEVALVLVQKRVDLNCVNIERRTPLY
VAVRENHVSTVKVLLAEGADPNSLNLLLMATRENKAASIRALLEAGADIE
RRTSRESTPLHATAAFGSCAAMLTLLQLGANVNSKENRGKPRPKGKAAIS
VVIRCMAETRAASLPRLEHVSELLVPAPQDRAWRRRGFVVLRRALPNRVR
LAVEIPARAAEATEQPQQRPRSRARTGQMKVEVEVDGTHRGGGRAGERNG
ARAGIEVVREGTVGGFDGVSAWMTALAEEEVFRRIVGFL back to topmRNA from alignment at Scaffold_376:27701..29081+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2050_4a-0001 ID=EsuBft2050_4a-0001|Name=EsuBft2050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1381bp|location=Sequence derived from alignment at Scaffold_376:27701..29081+ (Ectocarpus subulatus male Bft15b)
ATGATCGAGGAGACACGATATTCAAACTGTTTGGCCACACCCGAGCAGTG
GGCCGAGTGGCTGAGAGCTCCACTGGAGCATGCGGCAGGAACCGGTAACC
GCGATCTGGTAGATAAGCTGCTGGGAGCCGGGTCAACGGCGGTGCCGGCT
GGCGGGGTTGTCATGGCAAGACGCTGCTGCATGCGGCTGCTGAGGGCGGC
AACGTGCATGTCATCACAGGTTGCGCAGGGCAGGGGCAGGAGGAGACATG
AAAGCGAAAACCCTCGACACCGGACATACACCTCTGGATCTGGCGGTTGT
CGGCGGGAATGAGGCTGCCGCAGAGGCGCTAATCATGGCTGGGGCGGATA
TGAACGTGCTCGATGTCAAGAATGACGGCCTGCTGCACCTCACGATCACA
GGGGGTCATGTGCGAATCGCGAAGGACCTGTTGCTGAGCGGAGCCAATCC
CATTTCAGGCGGGATCGAACGGCAATTTCCCCATCCACCTCCCTGCTTGC
TATGGTTTTGATGAGGTGGCGTTGGTATTGGTCCAGAAGAGGGTTGACCT
GAATTGCGTCAACATCGAACGACGTACTCCCCTCTATGTGGCGGTGAGAG
AGAACCACGTTTCCACCGTGAAAGTGCTTCTGGCTGAAGGCGCTGATCCC
AACTCCCTCAATTTGCTGCTAATGGCAACGCGCGAGAACAAAGCGGCCTC
CATCCGAGCGCTGTTGGAAGCCGGAGCCGATATCGAACGTCGGACTTCCA
GGGAATCAACCCCACTCCATGCCACAGCAGCCTTTGGCTCATGTGCAGCC
ATGCTGACTCTTTTGCAACTGGGAGCCAACGTCAACTCGAAGGAAAATAG
AGGCAAACCCCGTTACACTTCGCGCGCCGCCATCCCGATGTCGTGGACCT
GTTCTTGAGATGGGGTGCGGACGAGACAGCCGTAGGCCCAAAGGGAAAGG
CCGCCATTTCCGTCGTGATACGATGCATGGCTGAAACTCGCGCAGCTTCT
CTCCCGCGCCTTGAGCATGTTTCCGAGCTACTGGTACCTGCTCCGCAGGA
CAGGGCCTGGCGTCGCCGGGGCTTCGTGGTCCTTCGCCGTGCCCTCCCAA
ACAGGGTGCGGCTGGCAGTGGAGATCCCTGCAAGAGCAGCTGAGGCTACC
GAGCAGCCGCAGCAACGCCCGAGGAGCCGTGCTAGGACAGGGCAGATGAA
GGTCGAGGTGGAGGTGGATGGGACACATCGAGGCGGTGGTAGAGCAGGTG
AGAGGAATGGCGCACGAGCCGGAATCGAAGTTGTGCGTGAAGGCACCGTC
GGTGGGTTCGATGGTGTGTCGGCCTGGATGACGGCACTGGCAGAGGAGGA
AGTGTTCCGCAGGATCGTGGGGTTCCTGTAG back to topCoding sequence (CDS) from alignment at Scaffold_376:27701..29081+ >EsuBft2050_4a-0001 ID=EsuBft2050_4a-0001|Name=EsuBft2050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1170bp|location=Sequence derived from alignment at Scaffold_376:27701..29081+ (Ectocarpus subulatus male Bft15b)
ATGATCGAGGAGACACGATATTCAAACTGTTTGGCCACACCCGAGCAGTG
GGCCGAGTGGCTGAGAGCTCCACTGGAGCATGCGGCAGGAACCGGTAACC
GCGATCTGGTAGATAAGCTGCTGGGAGCCGGGTTGCGCAGGGCAGGGGCA
GGAGGAGACATGAAAGCGAAAACCCTCGACACCGGACATACACCTCTGGA
TCTGGCGGTTGTCGGCGGGAATGAGGCTGCCGCAGAGGCGCTAATCATGG
CTGGGGCGGATATGAACGTGCTCGATGTCAAGAATGACGGCCTGCTGCAC
CTCACGATCACAGGGGGTCATGCGGGATCGAACGGCAATTTCCCCATCCA
CCTCCCTGCTTGCTATGGTTTTGATGAGGTGGCGTTGGTATTGGTCCAGA
AGAGGGTTGACCTGAATTGCGTCAACATCGAACGACGTACTCCCCTCTAT
GTGGCGGTGAGAGAGAACCACGTTTCCACCGTGAAAGTGCTTCTGGCTGA
AGGCGCTGATCCCAACTCCCTCAATTTGCTGCTAATGGCAACGCGCGAGA
ACAAAGCGGCCTCCATCCGAGCGCTGTTGGAAGCCGGAGCCGATATCGAA
CGTCGGACTTCCAGGGAATCAACCCCACTCCATGCCACAGCAGCCTTTGG
CTCATGTGCAGCCATGCTGACTCTTTTGCAACTGGGAGCCAACGTCAACT
CGAAGGAAAATAGAGGCAAACCCCGCCCAAAGGGAAAGGCCGCCATTTCC
GTCGTGATACGATGCATGGCTGAAACTCGCGCAGCTTCTCTCCCGCGCCT
TGAGCATGTTTCCGAGCTACTGGTACCTGCTCCGCAGGACAGGGCCTGGC
GTCGCCGGGGCTTCGTGGTCCTTCGCCGTGCCCTCCCAAACAGGGTGCGG
CTGGCAGTGGAGATCCCTGCAAGAGCAGCTGAGGCTACCGAGCAGCCGCA
GCAACGCCCGAGGAGCCGTGCTAGGACAGGGCAGATGAAGGTCGAGGTGG
AGGTGGATGGGACACATCGAGGCGGTGGTAGAGCAGGTGAGAGGAATGGC
GCACGAGCCGGAATCGAAGTTGTGCGTGAAGGCACCGTCGGTGGGTTCGA
TGGTGTGTCGGCCTGGATGACGGCACTGGCAGAGGAGGAAGTGTTCCGCA
GGATCGTGGGGTTCCTGTAG back to top
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