EsuBft2017_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2017_4a-0001
Unique NameEsuBft2017_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:849660..853421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2017_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length166
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_4aEsuBft2017_4aEctocarpus subulatus male Bft15bgeneScaffold_242 849660..853421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_4a-0001EsuBft2017_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 850690..850857 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_4a-0001-exonagat-exon-43757Ectocarpus subulatus male Bft15bexonScaffold_242 849660..851254 -
EsuBft2017_4a-0001-exonEsuBft2017_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 853355..853421 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_4a-0001-exonagat-three_prime_utr-7700Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 849660..850689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_4a-0001-cdsEsuBft2017_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 850690..850857 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_4a-0001-exonagat-five_prime_utr-4981Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 850858..851254 -
EsuBft2017_4a-0001-exonagat-five_prime_utr-4982Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 853355..853421 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2017_4a-0001 ID=EsuBft2017_4a-0001|Name=EsuBft2017_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1662bp|location=Sequence derived from alignment at Scaffold_242:849660..853421- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACACCTTTTCCCTCTGGATTTCATAGTTGCAGCACCGCGCGCGGTTTCT
AACACCTTCCTCTCCAGGTGGTCATGACCTAGAGGTAAAAGGTTGTGGCA
GCACGACCTGGCACATGGCCGGAACTTCAGGGTGTGCTACCGTCTGCAGC
TGCACCTGCCGTGGCGGAATGCAGCCTTGATCCAACCACTAGGGCGGGCT
GGCATCACAGAGAGAGTTAAATGACGTGTTCGGCTCCGTCCCGTCCTCCC
ACCCTTCCACTCCAACCTTCCACACGATGTGGTTGGTGTCCAACCTGCCG
CAACTTGCACCTTTGCGCACCTGTGTAAAAAGACAACTACAACCCTAACA
CGACTGGTTGATGTGCGCCGTAGATAGATGCTACTACTGCTGTACGTTCT
GCGTTGGTGTACACCTGCTGGATGGTGCGTGCTAGTGTGAAAACAGGTAG
TGTCGTGTTCTGACATGGAGACCACCGAATCCCACACTTTCGACCAAACC
CAAGCGGTAGGCACCGCTCGAAGTCCATTGACATTGACGTTGACAATGGG
TGCGTGCGTGGAGCCTTGTCTACCTCCAAATCATCTCGTTGTGAGTTACT
GCTTAGTTCCGCATGGTCGCGAATCTTTGTGAGTTGTGCCGCGGGTGTAG
CAGCGGGACAATGTAGTACAGTGCTGGTGCTTGCCTGCGATGCAGGTGTT
TTTTCATCTCTCTACATAGCGGGGTGGCAGATGCCGAGGAACCGCAACCG
TGCCGGGCTCGCCCCACAGTCATGGTATGAGGCGGCCGCGAGCATAGAGG
AAGGCTTGTGGATATTGGCGGAAATGCGATGGCGCCTGCGTAACGGGATG
ACGTATACCGGGACTACCAAGTGCCGATAAATATGTACGAGGTATGTATG
GTAAAAGCTGTCGCCACGAGCTGTGGGAAGGTTTGATTGTGTTCAATTGG
GGTAGAAGGGCGATTTTGTATTGCCACGATAACATGGGTGTTGGTATGTA
TGATGTTGGCTGCACCTCCGTTCACAGCGCTAAACAAATGAGCGTTGTGA
GCTTCGTTCACTGCATGTTCCCCACACCGCCTTGCTGCGCCCAAGTCTTC
CTGTAGGAGGAGGAGAGGTTCGTTTGCGTCAACGGGAAGGCAACCTTGCG
GTCCTCGCGGTCCAGGCGCGAGGGGTGCTGTTGACGCTGCTCCTGTGAGA
AGCAACATCACATGGCGTCTACTCTGTCGTTCCCCATTCTGCTCACAAAG
ATGGCATCAGACTTGCTACTCACGCTAGTGCTATTCTACCCGCAGTCCGG
ACACAGCGTCGTTCTTGTCTAGAACAACAAGTCGCGATGGGAGGTTGGAT
TCTTTGGCCACGGAATCGATTGACCACTACAATGCGTTGCATGAGGATAG
GCCGGCCAGGCCCCTGCCAACATTGCCGTGACTCCCATCCCAGTCTCAAG
AGACTTACTGGTGGACGATTGGGACGATGCTTCGTTGTTGGAACCGGCAA
GTGTTTTGGCAGGACACGGTGATTTATTTCCCTTGGCTCAGGTAGGTCGA
AATATTGGGGGCATCAAGGACCGAAGCCATCGTAGCGGCAGCTGGAGACG
AACGCGGAACCCCCGAGGAAGCGAGTTTACGTATAAGGCTGAACAGTATG
GTGAACCCGTAA
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protein sequence of EsuBft2017_4a-0001

>EsuBft2017_4 ID=EsuBft2017_4|Name=EsuBft2017_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
METTESHTFDQTQAVGTARSPLTLTLTMGACVEPCLPPNHLVVSYCLVPH
GRESL
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mRNA from alignment at Scaffold_242:849660..853421-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2017_4a-0001 ID=EsuBft2017_4a-0001|Name=EsuBft2017_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3762bp|location=Sequence derived from alignment at Scaffold_242:849660..853421- (Ectocarpus subulatus male Bft15b)
AACACCTTTTCCCTCTGGATTTCATAGTTGCAGCACCGCGCGCGGTTTCT
AACACCTTCCTCTCCAGGTACGTGGTCGTGGGTGTGTTTTCGCCCGGGAT
GGCTTCCCCGACGCATTCCAAAATGCTATGCCTCTGCTTTGATTCACAGC
GCGTTTCGTGAAAAATTATCAACAAGTACTCCTGTTGTGTGTTGTACTGC
CTGTGTCAAGAATCCCTGCCCTAGACTATTGTGTGTAAGATGGTCCGTTC
GTGTGTGTACAACGGACTATTGTGTGTAGTACAGCACTGCTGGCTCTGCC
GTTAGTACTGGCTCTGCCGGCCGGCAGGGTATGTACAGCAGTGCAACACG
TTACTGTGCCGCACTGCTGTAATAATACAAGAACAGATGTTAGCAACTAT
TGGAGGATTGGTGGCATTCATACGACCCCAAATAAGTGTGCACCGTCAGG
ATTTTTGACAGCGGTTCCTCTGAGAGACTGAATTGCTGCTGCTGTGGTGC
GGCGAGCTAGACAAATAACCAGATTCTCGCGAACCTCCGGACCTTTCGTG
CGGTACAATAAAGTACCGAGGTAGCTTGGATCTCGTGACCTGCTGTAGCT
ATGGATCCAAAAAGCAAGACCGCGGACGACGGCTGGTGTAGCCATACATT
GGGAGGCAATGGTACCGCTGCTGAAACTAGACTACCTAGATTGTCTGGTT
GTATGTCAGGCTTTCATCGCAGCGTACAGCAAAGGTATGATCCATGGCTG
TGCAACCAGCAGGCTTCGCACCCGCCTGTACACAAGTGCATCGACGATGT
GAACCGCCATAGCATGTTCTTTTAGGTGGATCGTGTGGTTGGAACCTCTC
CCAACTTGCAGACTACTAGTCTACAACGTGCCTTCTATGTAAACTAGAAT
ACTACGACTAGTAGACTAGTCTAGTCTTTCTTGTAGACTAGTATGACAGA
GTCTACCACCGCAAGTTGACAAGAGCGACTAGCGCGCTGTGTGTAACTAC
GCCTGTACCGTTTCTATGTACTTAGTCTAGGGATACTGCCGTCTTTTGAT
GTTTGCAGAGAAGGGTTGCTTTGCTACACCCTGGACTAATGTTCACGAAG
CACAATAATATTGGCACTACGGGGCTTTCCCGAAAATAATGACCAGGAAG
AGTTTTGACAAACATAACCTTGCCGAACACGGCAGTAGATTAGATGATGT
GGCAGGCCATCTTGCGGATTGACACTGTTGCTGCTTTCTCCTGTTGTCAA
CTTTGTGTCAACCTGACATGCTTGAAGACTTCGCAAACTGCCTATAGATT
GACATTGCTGCCCACAATATTACATGTCGGGTTGTAGTCTATGCATTGTA
TTTGGACTACTAGTCTGAGGCTCGCAATATATATTCCTCTGTTCCCAACA
CGAGAAGAACGGCGATACACCATTCCATTTTTCGAAACACGTGAACCCCG
AACGCAATCGCGATGGATATCATCAGCTCCCAGCAACGGACCAACGTACG
TAGTCGCCTGTCGAAGCCACAAACCCATTCAGGATACAAATCCTGCTCAT
CAACGTTCGTTCATCGTGATCTACCGCAGACGTTTAAAAATCAATAGATT
GGCTTAAGGTGGACGGGCTGTGATAGAACATAGATTAGATGTGGTTTGTT
TTTGCGCGCTCCACTTCTGTTTGGTGTTGCCCTCATGAGGTTCTCGCACA
ATTTGGCAAGTTATTCATGCAAATCGCACCCACGAACGCCACTGCTCAGC
CAACACAAGGACGTTGTGGTTGATATTCAAATCTTTGTTGTGGGCGATGC
CCATCGATGGATACCTGGACTCTGACGCATCGACGAATACATCAAGTCTA
CACTCCAAACATTGTCCTTGACAGTCAATACTGCAGACGTTCATAATCCA
CTGCTCCTTCTATGTAGTGCACAACGCTGAACAGCGTGTCGAATCCATGG
TCGACGTTGACAATGATGCTTATCGCTATGCTTTATCGCTATGCTTTTAC
AATGGATACTAGACTACTAGATATACCTTTCGAGAGGCAACCTTCCGTCT
TTGTGGAAAGAAAGAGACTACATGTAGTTGACACAGCCCGACACAGACGA
TACAGCAGTCCTCTTTACATTTTTTCTCCTTGCGTTCTGGTTTGAATCCT
TTGTATTCCCAAAACAGGTGGTCATGACCTAGAGGTAAAAGGTTGTGGCA
GCACGACCTGGCACATGGCCGGAACTTCAGGGTGTGCTACCGTCTGCAGC
TGCACCTGCCGTGGCGGAATGCAGCCTTGATCCAACCACTAGGGCGGGCT
GGCATCACAGAGAGAGTTAAATGACGTGTTCGGCTCCGTCCCGTCCTCCC
ACCCTTCCACTCCAACCTTCCACACGATGTGGTTGGTGTCCAACCTGCCG
CAACTTGCACCTTTGCGCACCTGTGTAAAAAGACAACTACAACCCTAACA
CGACTGGTTGATGTGCGCCGTAGATAGATGCTACTACTGCTGTACGTTCT
GCGTTGGTGTACACCTGCTGGATGGTGCGTGCTAGTGTGAAAACAGGTAG
TGTCGTGTTCTGACATGGAGACCACCGAATCCCACACTTTCGACCAAACC
CAAGCGGTAGGCACCGCTCGAAGTCCATTGACATTGACGTTGACAATGGG
TGCGTGCGTGGAGCCTTGTCTACCTCCAAATCATCTCGTTGTGAGTTACT
GCTTAGTTCCGCATGGTCGCGAATCTTTGTGAGTTGTGCCGCGGGTGTAG
CAGCGGGACAATGTAGTACAGTGCTGGTGCTTGCCTGCGATGCAGGTGTT
TTTTCATCTCTCTACATAGCGGGGTGGCAGATGCCGAGGAACCGCAACCG
TGCCGGGCTCGCCCCACAGTCATGGTATGAGGCGGCCGCGAGCATAGAGG
AAGGCTTGTGGATATTGGCGGAAATGCGATGGCGCCTGCGTAACGGGATG
ACGTATACCGGGACTACCAAGTGCCGATAAATATGTACGAGGTATGTATG
GTAAAAGCTGTCGCCACGAGCTGTGGGAAGGTTTGATTGTGTTCAATTGG
GGTAGAAGGGCGATTTTGTATTGCCACGATAACATGGGTGTTGGTATGTA
TGATGTTGGCTGCACCTCCGTTCACAGCGCTAAACAAATGAGCGTTGTGA
GCTTCGTTCACTGCATGTTCCCCACACCGCCTTGCTGCGCCCAAGTCTTC
CTGTAGGAGGAGGAGAGGTTCGTTTGCGTCAACGGGAAGGCAACCTTGCG
GTCCTCGCGGTCCAGGCGCGAGGGGTGCTGTTGACGCTGCTCCTGTGAGA
AGCAACATCACATGGCGTCTACTCTGTCGTTCCCCATTCTGCTCACAAAG
ATGGCATCAGACTTGCTACTCACGCTAGTGCTATTCTACCCGCAGTCCGG
ACACAGCGTCGTTCTTGTCTAGAACAACAAGTCGCGATGGGAGGTTGGAT
TCTTTGGCCACGGAATCGATTGACCACTACAATGCGTTGCATGAGGATAG
GCCGGCCAGGCCCCTGCCAACATTGCCGTGACTCCCATCCCAGTCTCAAG
AGACTTACTGGTGGACGATTGGGACGATGCTTCGTTGTTGGAACCGGCAA
GTGTTTTGGCAGGACACGGTGATTTATTTCCCTTGGCTCAGGTAGGTCGA
AATATTGGGGGCATCAAGGACCGAAGCCATCGTAGCGGCAGCTGGAGACG
AACGCGGAACCCCCGAGGAAGCGAGTTTACGTATAAGGCTGAACAGTATG
GTGAACCCGTAA
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Coding sequence (CDS) from alignment at Scaffold_242:849660..853421-

>EsuBft2017_4a-0001 ID=EsuBft2017_4a-0001|Name=EsuBft2017_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_242:849660..853421- (Ectocarpus subulatus male Bft15b)
ATGGAGACCACCGAATCCCACACTTTCGACCAAACCCAAGCGGTAGGCAC
CGCTCGAAGTCCATTGACATTGACGTTGACAATGGGTGCGTGCGTGGAGC
CTTGTCTACCTCCAAATCATCTCGTTGTGAGTTACTGCTTAGTTCCGCAT
GGTCGCGAATCTTTGTGA
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