EsuBft2017_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2017_2a-0001
Unique NameEsuBft2017_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:867336..870471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G936
ProteomeIdEsuBft2017_2
Protein domainsIPR006689
Protein domainsIPR001806
Protein domainsIPR027417
Protein domainsIPR006687
Protein domainsIPR024156
Protein domainsIPR003579
Protein domainsPTHR11711
Ownerapollo_admin@sb-roscoff.fr
Noteadp-ribosylation factor-like protein 6 os:pongo abelii gn:arl6 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1089
Hectar predicted targeting categoryother localisation
Evalue1.05e-125
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota
Ec32 ortholog descriptionARL6L, ARF-like Ras superfamily GTPase
Ec32 orthologEc-15_002000.2
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K07937,ko:K07951
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
DescriptionGTP binding
COG categoryBDLTU
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0048193
GO1901135
GO0051650
GO0004571
GO0006605
GO0005525
GO0048856
GO0030030
GO0016482
GO0007275
GO0044238
GO0022607
GO0044712
GO0033554
GO0010256
GO0032386
GO0005930
GO0044802
GO0006996
GO0005856
GO0048869
GO0007264
GO0043234
GO0044248
GO0044446
GO0044425
GO1902580
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_2aEsuBft2017_2aEctocarpus subulatus male Bft15bgeneScaffold_242 867336..870471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_2a-0001EsuBft2017_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 867796..870445 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_2a-0001-exonagat-exon-43745Ectocarpus subulatus male Bft15bexonScaffold_242 867336..867894 -
EsuBft2017_2a-0001-exonagat-exon-43743Ectocarpus subulatus male Bft15bexonScaffold_242 868763..868914 -
EsuBft2017_2a-0001-exonagat-exon-43746Ectocarpus subulatus male Bft15bexonScaffold_242 869329..869457 -
EsuBft2017_2a-0001-exonagat-exon-43744Ectocarpus subulatus male Bft15bexonScaffold_242 869713..869865 -
EsuBft2017_2a-0001-exonEsuBft2017_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 870376..870471 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_2a-0001-exonagat-three_prime_utr-7698Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 867336..867795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_2a-0001-cdsEsuBft2017_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 867796..867894 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2017_2a-0001-exonagat-five_prime_utr-4979Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 870446..870471 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2017_2a-0001 ID=EsuBft2017_2a-0001|Name=EsuBft2017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1089bp|location=Sequence derived from alignment at Scaffold_242:867336..870471- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCAACGGGATCACAACACCAACTACGATGAAGGGCCCATTTTTCTTTCGT
GAGAGCAAGCACCTGTCAGTTCTAGTTATCGGGCTTGACAATGCAGGCAA
AACCTCTGTTCTCTGCCACCTAGCGAATGTAGCCTCGACCAACAGGAGCA
TGTTGAAGAGTGTGGGAACCGCGCCTACAGTTGGCACCCAAATGGTCGAA
TTCCACAGACGGAACGTCGGCTGGGTAGCTTGGGACATGTCAGGCCAAGG
GCGATATCGCGACCTTTGGGTTTCTCACGCATCGCATGTTCACGGCGTAA
TCTTCGTCGTCGACGTCACGGACCGCGCGAGAATTGCAGTGGCTAGGGAG
GAGCTTCACGGCATACTGACGTCAAGAGCTTTTCGAAAGGGCAACACACC
GGTCGCGATCTTGGCGAACAAGTACGACGCCATTTCGGGGGCATCGGCCG
GCGGTGTCAAAAATAGTGGTCGTGATGGCTGCCTTACTCTGGAGAACGTG
TGCATCGCACTTGCGGTTGACACGCTTCAGGTGCACCGCCCCACCCGCGC
CTTCGCCACGAGCGCTTTGACAGGGGAAGGGATCGAGGAGGCCATGGATT
GGTTGACCGTGCATGCCACAAACAGATAGCAGGCGGCGAAGTAATCTTTC
CATGACGTCGGCGAGGAAGGGCGATGAGAGCAAAAGAGGAATGCAGTGTA
CGGCCACCTCTGTCAGGGAGAGCAAGGGCTTCGGGGGGGCTGGTTGGTTG
CCGCAACTGCTGTTCTGAGGGAGTCTTGAGGCGTTTTCCCGACGGACGCG
GAAAAGCGAGAGAGCGGTTGTACCTCATTGTCTACAGTACGACGATCAAT
CCTCCTGGACACCGTTCGTACAGTCTATTATAATAGGTTGCTGTTGTTCC
GTGGTACAGAAGAAACCACGAAACAAGCCAACAGTAGAGGTTCCTATAGC
AGTGTGTACTTGGCGTGAGGGAGCAATTCTAGGCTGCATACCCACATTTG
GGAGACTCGGAGGACTTGGCACGAGAAAGAAAATGACGTCGCACGCGCCT
GCTTTGCCCCAAGGCTTTCGGCTCTGGTCCCCACAGCGT
back to top

protein sequence of EsuBft2017_2a-0001

>EsuBft2017_2 ID=EsuBft2017_2|Name=EsuBft2017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MKGPFFFRESKHLSVLVIGLDNAGKTSVLCHLANVASTNRSMLKSVGTAP
TVGTQMVEFHRRNVGWVAWDMSGQGRYRDLWVSHASHVHGVIFVVDVTDR
ARIAVAREELHGILTSRAFRKGNTPVAILANKYDAISGASAGGVKNSGRD
GCLTLENVCIALAVDTLQVHRPTRAFATSALTGEGIEEAMDWLTVHATNR
back to top

mRNA from alignment at Scaffold_242:867336..870471-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2017_2a-0001 ID=EsuBft2017_2a-0001|Name=EsuBft2017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3136bp|location=Sequence derived from alignment at Scaffold_242:867336..870471- (Ectocarpus subulatus male Bft15b)
TCAACGGGATCACAACACCAACTACGATGAAGGGCCCATTTTTCTTTCGT
GAGAGCAAGCACCTGTCAGTTCTAGTTATCGGGCTTGACAATGCAGGTAC
TTGAACGTACAAAGCGGTCTGGATCTCACCCCAAAGATGTGCCGTACAAA
TGCATATGCCTATGTGTCTCGGGTAGGCGCCCTCATTACAATAGGAGAGA
GCGATGTAAGCTAGTTTCGATACTTGTTTTAACCTTTGTAGATCTTACCA
AGTGAGGTGCCACCGGCAAGTATTTGTGGGGAGAGTGTTTAGATTGTATA
TCCACTGCATGGCTAATATATATCCACTTCTCGTGCACACCGTAGGCAGA
CGTACAGCTGACCACCGAGATCGTACTTCGCAGCGACGTTGGGACTATTA
CCATATCCTGTTCTTTCTGGCACAGCAGCAGCAGCAACAGCAGCAGCTAG
ACCTGTTCCGGAGCAGCGCAATCGCACGTTGATTGCTGAACCATTTGAAG
AAGAGCACTTTGCACGACGAGTGTGGCCTGCTGAACTCCTCTTTCCTCTG
ACACGTATGTATTTACGTGTGCCTGGTGGTGCTCTTCTTCTCGCGTTGAA
CCCCAGGCAAAACCTCTGTTCTCTGCCACCTAGCGAATGTAGCCTCGACC
AACAGGAGCATGTTGAAGAGTGTGGGAACCGCGCCTACAGTTGGCACCCA
AATGGTCGAATTCCACAGACGGAACGTCGGCTGGGTAGCTTGGGACATGT
CAGGCCAAGGTAACGTCGGAAAATGACATGATATCACACAGACATCACAA
CACACAGTAGTAGCGGTAATGTAGTAGCCTTACGCGTGCTTGGCACTCAA
GAGCAGCTGCGGTGGTCTAGATAACATCGTCTTCCATTGGACCGCATTAG
ACTGCATTATTGTTTGGGTAAAGGCATAGCATAGCACCGTGATTGAATGC
TAAAACGTGTGTACGTACGTTCTGTGCTACCAACGAAGCCACACGTTATT
CTTGCCCGTGACAGGGCGATATCGCGACCTTTGGGTTTCTCACGCATCGC
ATGTTCACGGCGTAATCTTCGTCGTCGACGTCACGGACCGCGCGAGAATT
GCAGTGGCTAGGGAGGAGCTTCACGGCATACTGACGTCAAGAGGTGCCGC
TCATTGTTCGCCAATATTTGGAACAAATGTATAGAGCGGGCACGGTTGGG
GAAGAATATAAAACATTTCGACACTGGGAATAGGGTGTTGTTGTACATGC
CGTCGTTTCTACTGCTATTGTCTGTTGTCCTATTGTACGGACTACCTTTC
TTTGGAGCAGAAGGGGTACAACTACGTAACACGGTACACACTAGTAACCA
CACCCATCTATTCTGTAGTATCCATGGACCGCAAAGCATCGTCTGCTGTT
GCGTCGAAACGAGTACCACAAGCGCCTGGCGGCTGTCGAGCGACAACGAC
CGTCACCAATGCGACGAACTCAATGCCGTGCTCATCATGCCCGCGCTCTC
TGATACCCCATACATTTCCCCTTCATTCTTGACGCAATTCTTGGAACATT
GATGAAGCTTTTCGAAAGGGCAACACACCGGTCGCGATCTTGGCGAACAA
GTACGACGCCATTTCGGGGGCATCGGCCGGCGGTGTCAAAAATAGTGGTC
GTGATGGCTGCCTTACTCTGGAGAACGTGTGCATCGCACTTGCGGTTGAC
ACGCTTCAGGTGATAACCTGTTCCTTAACCCATGTAGGATCCAAAATCAG
ATCATTTGGGTCTACGTATGTACGTCGTGAGGCTCTATATATATTGCTTT
TCCAGCCGTTCGAATCCACACGTGAAAGAAACTGACTTCTACCCGCTACT
GCAAGCCCTGGAATAAAGCAGTTGGATGTAAAAATATGATTAACGTATAA
TATATACCTTCTACTGGCCGCCCCGGTGGTCTAGTGATATCCTCGTAATT
CGCTTGTCGCAGAGGTCGTGAATTCGAATCCCCATGGGGTGAAAATTTTA
CGAAATCTGCGGGTGAGAGCGAAATATAGCTGACAAGCTCTCGTGAGTAC
TAAACTTCGACGTCAGACCGTTGACGAGGGAAAGGGACGGCTGGACCCTT
CTCGCGAAAAAAATAATATTCATCACGCACCGCAGGAGGAAGGTGGGGCA
TGAAAAGAACTAACAAGAAGGAAAAAGCCCTGGTGTTTACCCCCTCCTGT
GTGACCCTGGATGGTTGTAGTTGCACGAACAAATACACTGAAAAGTGTGG
TACTCTACATACGCTGAAAAGTGTAGTACACGTCTCACCACGAAAAATGG
GGGGACTGTCGCCATAATGAATAGGACGAAAACAAACTAACACACATACC
TACCCGGCGAGCGCCGTTCAACGACAACGATGCAAATGGGCCCAGAAATA
AATAGTGGTTGTTTAGCTGATCGCCTGATTGTCTTCTCACGAGCCTTGGA
GAGCTTGAGATAGTGTGGGCCTTATTTTCGTGCAAGTCCGTCCGCTACCC
TCAATTAGCATCTACATTATTAGCAGTTTTTCGCTGAAGTCCACGTAATT
TTTCATCTGTTCTTGTTCTTGCCGCAGGTGCACCGCCCCACCCGCGCCTT
CGCCACGAGCGCTTTGACAGGGGAAGGGATCGAGGAGGCCATGGATTGGT
TGACCGTGCATGCCACAAACAGATAGCAGGCGGCGAAGTAATCTTTCCAT
GACGTCGGCGAGGAAGGGCGATGAGAGCAAAAGAGGAATGCAGTGTACGG
CCACCTCTGTCAGGGAGAGCAAGGGCTTCGGGGGGGCTGGTTGGTTGCCG
CAACTGCTGTTCTGAGGGAGTCTTGAGGCGTTTTCCCGACGGACGCGGAA
AAGCGAGAGAGCGGTTGTACCTCATTGTCTACAGTACGACGATCAATCCT
CCTGGACACCGTTCGTACAGTCTATTATAATAGGTTGCTGTTGTTCCGTG
GTACAGAAGAAACCACGAAACAAGCCAACAGTAGAGGTTCCTATAGCAGT
GTGTACTTGGCGTGAGGGAGCAATTCTAGGCTGCATACCCACATTTGGGA
GACTCGGAGGACTTGGCACGAGAAAGAAAATGACGTCGCACGCGCCTGCT
TTGCCCCAAGGCTTTCGGCTCTGGTCCCCACAGCGT
back to top

Coding sequence (CDS) from alignment at Scaffold_242:867336..870471-

>EsuBft2017_2a-0001 ID=EsuBft2017_2a-0001|Name=EsuBft2017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=603bp|location=Sequence derived from alignment at Scaffold_242:867336..870471- (Ectocarpus subulatus male Bft15b)
ATGAAGGGCCCATTTTTCTTTCGTGAGAGCAAGCACCTGTCAGTTCTAGT
TATCGGGCTTGACAATGCAGGCAAAACCTCTGTTCTCTGCCACCTAGCGA
ATGTAGCCTCGACCAACAGGAGCATGTTGAAGAGTGTGGGAACCGCGCCT
ACAGTTGGCACCCAAATGGTCGAATTCCACAGACGGAACGTCGGCTGGGT
AGCTTGGGACATGTCAGGCCAAGGGCGATATCGCGACCTTTGGGTTTCTC
ACGCATCGCATGTTCACGGCGTAATCTTCGTCGTCGACGTCACGGACCGC
GCGAGAATTGCAGTGGCTAGGGAGGAGCTTCACGGCATACTGACGTCAAG
AGCTTTTCGAAAGGGCAACACACCGGTCGCGATCTTGGCGAACAAGTACG
ACGCCATTTCGGGGGCATCGGCCGGCGGTGTCAAAAATAGTGGTCGTGAT
GGCTGCCTTACTCTGGAGAACGTGTGCATCGCACTTGCGGTTGACACGCT
TCAGGTGCACCGCCCCACCCGCGCCTTCGCCACGAGCGCTTTGACAGGGG
AAGGGATCGAGGAGGCCATGGATTGGTTGACCGTGCATGCCACAAACAGA
TAG
back to top