EsuBft2016_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2016_4a-0001
Unique Name	EsuBft2016_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:828622..831565 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G933
ProteomeId	EsuBft2016_4
Protein domains	IPR001138
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	195
Hectar predicted targeting category	other localisation
Evalue	1.46e-30
EggNOG OGs	COG1025@1\|root,KOG0959@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG ko	ko:K01408
KEGG Pathway	ko05010,map05010
EC	3.4.24.56
Description	metalloendopeptidase activity
COG category	O
BRITE	ko00000,ko00001,ko01000,ko01002

Cross References

External references for this mRNA


Database	Accession
GO	0005515
GO	0000981
GO	0003824
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2016_4a	EsuBft2016_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 828622..831565 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2016_4a-0001-exon	EsuBft2016_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 828622..830406 -
EsuBft2016_4a-0001-exon	agat-exon-95554	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 831187..831279 -
EsuBft2016_4a-0001-exon	agat-exon-95553	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 831485..831565 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2016_4a-0001-cds	EsuBft2016_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 828622..830406 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2016_4a-0001	EsuBft2016_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 828622..831565 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:828622..831565-
coding sequence from alignment at Scaffold_242:828622..831565-

spliced messenger RNA

>EsuBft2016_4a-0001 ID=EsuBft2016_4a-0001|Name=EsuBft2016_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1959bp|location=Sequence derived from alignment at Scaffold_242:828622..831565- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAGCCTGATCAAGAAGAGATTGCACGGAGAGGACGCCCCAGGCGA
CCAGCAGTCAACACTCAAGATGCGACGATCGTGCGACGCGTGCGCTTTGG
CGAAGCGGCGGTGTGATGGGGAACTGCGCTGCTTGCTCTGCTGCAAAAAG
AGCATTCGCTGCGTCTACAGCACGCGGCAGAAGAGCGGCCCGAAGGGACA
TAAGGCCCCGGCGGAGTCGGTGGCGGCAACTGCGACGACCAGCATCAGCT
CCACGACGACTACCGACAAGCCCATCAAGCGGCGCAAGACCTCGAAGAAG
CCGTCGAAGAAGCAAGCTTCCGCTGCTGCTGCTCCCTCCACGACCACCGG
GTGGCATCACCAGCAGCAGCAATCTTCGCTGCTCAAGACCGTCCCTCCCG
GCACACCAGCTGATCTCGCACCCTCTCCGACGGCCCCGGTGGCGCCCGCA
TCGCCGTCGTTGTCGAAGGGGCAGCAGCTGGCCGCACCCGGCCGCCGGCA
CCCAAGCCAGCAGGTGGCGAGGAAGGAGCCCCGACCTCGCCACCACCGTA
AGGACGCAGATGGGAAGGAGATCCCTGCAGTAAAGAGCCCCGCCCCGGCA
GCAGCAGCAGCCAATGCCGTTGTTTCCCCGTCCAACGGCACTGCCACCAG
TCGCTTCGCACGCCAGCAGCCAGTGGCACCGGCTCTGCCTGCTCAGTTCC
CTTCCCTAGCGCGATCCAAATCATCAGCGGCGGAGGAGACCGTTGGGGGC
AAGTTCGCCCCGCTCCCGCGGATGGTGCCGCGCCGCGGGAGCTCCGTGTC
AGCTCCAGGCTCGGGATCCAGCGTCGACGGCAGCTCGTCTTCGCTGAGCT
GGGACGACGTTCAGGACGTGTTCGTGTCGAGCCTTGAGGACGATGTGCTG
TGGAGCTGCGACGACTTCTCAGACGACGACCGGGCGGAGGGCTGGGCATC
GGTGGGGGTTGCGAGCGACAACCGCTCACCCGGCGGTTTTGATTGGATCC
CGTCCTACGTGGAGGAGAACGCGACGCCCTTGAACGATGCGCCAAAGGCG
CTGGAGGCGATACTGATGGCCACCGAACAAGCGTCGGTGTTGACGACCGA
CCAAACCGCTACCACCGCAGCTCCTCGTCCGGCAGGCAGGTTTGCGGGTC
AGCCGCCGCCCTCGGCGGCACTGGCACCGCAAGAGCCAATGATGTACCAG
ATGCTCCCGAGTCGCGCATTTTCCCCGAATGTGGTGTTCGCCCAGCGGAG
CCCGGGTGCCGGCGGCGGCTACGGCGGCGGCTGCGAAAGTAACGGCGGTT
TGCCACCCTCGGCAAAAATCAGCGACGAGGTCGAACCCATCGTCGTCGAC
GTGCTCCCCGCAGCGGGCGGCAGCAGCAGCAGCAGCAGCGGAATGCTCCA
GAACTCTTCCGGAGGAATAAGCGATTCGGAGGCCGCCGACTGCGGGGACG
GCGCGTGCAGCCCTATCTCGGGGTGGACACCGGAGGCGGTCGTGGCCGGC
GCTTCGACGCTCCTCGCTGTGCTCTCCGACGCAGACTTCTGCAGCAGTGT
CCGCAGCGATATTCTGGCGGGTGGCAACGGTTGGGGGGTCGAGCGCAGGC
ACCAGCAACACCAGCAGCAGCGTAACGACGACAGCAGCACGCGCTGGAGC
TGGCCGCCGAGGGACTTGCGCGCGAACTACGGCATGGCACCCCGTTCTCC
TCCGGGTGCCACACCGACGCTCGTCGTCGATGGATCCTGGCACACCCCTA
CTGACGGTGCTGCTGTCTCGGAGAACAACCGTGATCATTGTTACCACCGC
CAACAGCAACGGCAGCAGCAGCAGCAGCAGCAGGGGCTAGCCCTCGCCCC
GCCTGACATCCTTAGCTTGGTCAAAGAGCTGTCAACGCCGTCGGATGGAG
GCGGGACGGCTGCGCGGAGGGGAAAGGGGTCCAAGAGGTACCGCACCGCT
ACGTTGTAG

protein sequence of EsuBft2016_4a-0001

>EsuBft2016_4 ID=EsuBft2016_4|Name=EsuBft2016_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=652bp
MPSLIKKRLHGEDAPGDQQSTLKMRRSCDACALAKRRCDGELRCLLCCKK
SIRCVYSTRQKSGPKGHKAPAESVAATATTSISSTTTTDKPIKRRKTSKK
PSKKQASAAAAPSTTTGWHHQQQQSSLLKTVPPGTPADLAPSPTAPVAPA
SPSLSKGQQLAAPGRRHPSQQVARKEPRPRHHRKDADGKEIPAVKSPAPA
AAAANAVVSPSNGTATSRFARQQPVAPALPAQFPSLARSKSSAAEETVGG
KFAPLPRMVPRRGSSVSAPGSGSSVDGSSSSLSWDDVQDVFVSSLEDDVL
WSCDDFSDDDRAEGWASVGVASDNRSPGGFDWIPSYVEENATPLNDAPKA
LEAILMATEQASVLTTDQTATTAAPRPAGRFAGQPPPSAALAPQEPMMYQ
MLPSRAFSPNVVFAQRSPGAGGGYGGGCESNGGLPPSAKISDEVEPIVVD
VLPAAGGSSSSSSGMLQNSSGGISDSEAADCGDGACSPISGWTPEAVVAG
ASTLLAVLSDADFCSSVRSDILAGGNGWGVERRHQQHQQQRNDDSSTRWS
WPPRDLRANYGMAPRSPPGATPTLVVDGSWHTPTDGAAVSENNRDHCYHR
QQQRQQQQQQQGLALAPPDILSLVKELSTPSDGGGTAARRGKGSKRYRTA
TL

mRNA from alignment at Scaffold_242:828622..831565-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2016_4a-0001 ID=EsuBft2016_4a-0001|Name=EsuBft2016_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2944bp|location=Sequence derived from alignment at Scaffold_242:828622..831565- (Ectocarpus subulatus male Bft15b)
ATGCCTAGCCTGATCAAGAAGAGATTGCACGGAGAGGACGCCCCAGGCGA
CCAGCAGTCAACACTCAAGATGCGACGATCGGTGAGTAGGCCAGAGGATG
AGGTGACGAGATAGATGGTCTCGAGTTGCATCAGAAGAACAACAAACAAG
ATGTTTGTCATGCAAGGACGAGCAAGTTGTGGCACCGACGTTTTTGCCTT
GAAGCTCACGCGATTTCCCTTACTTGTGCGTGCTGTCGCTCACGTGATAT
CCCTTCCTTGTGCGTGCTGTCGCTGCCGACACCCAGTGCGACGCGTGCGC
TTTGGCGAAGCGGCGGTGTGATGGGGAACTGCGCTGCTTGCTCTGCTGCA
AAAAGAGCATTCGCTGCGTCTACAGCACGGTGAGACAATAAGCAGAGAGC
GACACAGAGAGGAGAAACCAGAAATGAGATGTAGGTACATACAGTCATTA
GTTGTGTGCCACAGCAGCCGCAGCGGGTTTGCAGGTATGGCAGCAGGTGG
TTCAACCCGCGAGTACGCCACATAGGCCTTGAATGCAACGCGTTCGCAGC
GATACTTGGCAGAATCCTCACTCACCATGCCTTGCTAAACTGGCTATTTT
CTCACGATAGACATGCGAGAGAAGAAAAGAGCGAGCACGAGAATTGGTAG
GCATAGGTGCACAGAGAGCGAAAAAGAGCGGCCATACAAATTGCTGTACT
GCTGTACTTGACTTGAAGTGAGCGGGATGAGAAGAGACATGTGACATCGT
GTGTGGTGTTGTGCTTCGGAAACGTTGCGGGTAAAGCGCCGTTAAAGCGT
TCAATGGTCGCTGGGGACACCCATGTTACGTGGAGCGTAGACAATAAGCC
GTGTATCCAGGCAATCCAGTTCGAGGACGAAAAACAACCTTTTCTACCTT
GTGGAGAGCGACACATGTAGACCAAAAACGTATGTATTCTACCGACGGTG
TTTCACACGTTTACAACACAGAATACGCATACCGTATCCATCCCATGTAT
CTACCAGTTTCGAACACAAAAGCTTCTCCCCCTTTTGGACACTCGCTCCC
CTTTGTGGCAGATTGATGCGTCTCTTGTCCAGCTGGCAGCTGCGTGTCTA
CTGCTGTGTAACGCCCTCCCGCCTCTCTCTCTCCGTTTTCGTTTTTTCTC
GCTGTGCAGCGGCAGAAGAGCGGCCCGAAGGGACATAAGGCCCCGGCGGA
GTCGGTGGCGGCAACTGCGACGACCAGCATCAGCTCCACGACGACTACCG
ACAAGCCCATCAAGCGGCGCAAGACCTCGAAGAAGCCGTCGAAGAAGCAA
GCTTCCGCTGCTGCTGCTCCCTCCACGACCACCGGGTGGCATCACCAGCA
GCAGCAATCTTCGCTGCTCAAGACCGTCCCTCCCGGCACACCAGCTGATC
TCGCACCCTCTCCGACGGCCCCGGTGGCGCCCGCATCGCCGTCGTTGTCG
AAGGGGCAGCAGCTGGCCGCACCCGGCCGCCGGCACCCAAGCCAGCAGGT
GGCGAGGAAGGAGCCCCGACCTCGCCACCACCGTAAGGACGCAGATGGGA
AGGAGATCCCTGCAGTAAAGAGCCCCGCCCCGGCAGCAGCAGCAGCCAAT
GCCGTTGTTTCCCCGTCCAACGGCACTGCCACCAGTCGCTTCGCACGCCA
GCAGCCAGTGGCACCGGCTCTGCCTGCTCAGTTCCCTTCCCTAGCGCGAT
CCAAATCATCAGCGGCGGAGGAGACCGTTGGGGGCAAGTTCGCCCCGCTC
CCGCGGATGGTGCCGCGCCGCGGGAGCTCCGTGTCAGCTCCAGGCTCGGG
ATCCAGCGTCGACGGCAGCTCGTCTTCGCTGAGCTGGGACGACGTTCAGG
ACGTGTTCGTGTCGAGCCTTGAGGACGATGTGCTGTGGAGCTGCGACGAC
TTCTCAGACGACGACCGGGCGGAGGGCTGGGCATCGGTGGGGGTTGCGAG
CGACAACCGCTCACCCGGCGGTTTTGATTGGATCCCGTCCTACGTGGAGG
AGAACGCGACGCCCTTGAACGATGCGCCAAAGGCGCTGGAGGCGATACTG
ATGGCCACCGAACAAGCGTCGGTGTTGACGACCGACCAAACCGCTACCAC
CGCAGCTCCTCGTCCGGCAGGCAGGTTTGCGGGTCAGCCGCCGCCCTCGG
CGGCACTGGCACCGCAAGAGCCAATGATGTACCAGATGCTCCCGAGTCGC
GCATTTTCCCCGAATGTGGTGTTCGCCCAGCGGAGCCCGGGTGCCGGCGG
CGGCTACGGCGGCGGCTGCGAAAGTAACGGCGGTTTGCCACCCTCGGCAA
AAATCAGCGACGAGGTCGAACCCATCGTCGTCGACGTGCTCCCCGCAGCG
GGCGGCAGCAGCAGCAGCAGCAGCGGAATGCTCCAGAACTCTTCCGGAGG
AATAAGCGATTCGGAGGCCGCCGACTGCGGGGACGGCGCGTGCAGCCCTA
TCTCGGGGTGGACACCGGAGGCGGTCGTGGCCGGCGCTTCGACGCTCCTC
GCTGTGCTCTCCGACGCAGACTTCTGCAGCAGTGTCCGCAGCGATATTCT
GGCGGGTGGCAACGGTTGGGGGGTCGAGCGCAGGCACCAGCAACACCAGC
AGCAGCGTAACGACGACAGCAGCACGCGCTGGAGCTGGCCGCCGAGGGAC
TTGCGCGCGAACTACGGCATGGCACCCCGTTCTCCTCCGGGTGCCACACC
GACGCTCGTCGTCGATGGATCCTGGCACACCCCTACTGACGGTGCTGCTG
TCTCGGAGAACAACCGTGATCATTGTTACCACCGCCAACAGCAACGGCAG
CAGCAGCAGCAGCAGCAGGGGCTAGCCCTCGCCCCGCCTGACATCCTTAG
CTTGGTCAAAGAGCTGTCAACGCCGTCGGATGGAGGCGGGACGGCTGCGC
GGAGGGGAAAGGGGTCCAAGAGGTACCGCACCGCTACGTTGTAG

Coding sequence (CDS) from alignment at Scaffold_242:828622..831565-

>EsuBft2016_4a-0001 ID=EsuBft2016_4a-0001|Name=EsuBft2016_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1959bp|location=Sequence derived from alignment at Scaffold_242:828622..831565- (Ectocarpus subulatus male Bft15b)
ATGCCTAGCCTGATCAAGAAGAGATTGCACGGAGAGGACGCCCCAGGCGA
CCAGCAGTCAACACTCAAGATGCGACGATCGTGCGACGCGTGCGCTTTGG
CGAAGCGGCGGTGTGATGGGGAACTGCGCTGCTTGCTCTGCTGCAAAAAG
AGCATTCGCTGCGTCTACAGCACGCGGCAGAAGAGCGGCCCGAAGGGACA
TAAGGCCCCGGCGGAGTCGGTGGCGGCAACTGCGACGACCAGCATCAGCT
CCACGACGACTACCGACAAGCCCATCAAGCGGCGCAAGACCTCGAAGAAG
CCGTCGAAGAAGCAAGCTTCCGCTGCTGCTGCTCCCTCCACGACCACCGG
GTGGCATCACCAGCAGCAGCAATCTTCGCTGCTCAAGACCGTCCCTCCCG
GCACACCAGCTGATCTCGCACCCTCTCCGACGGCCCCGGTGGCGCCCGCA
TCGCCGTCGTTGTCGAAGGGGCAGCAGCTGGCCGCACCCGGCCGCCGGCA
CCCAAGCCAGCAGGTGGCGAGGAAGGAGCCCCGACCTCGCCACCACCGTA
AGGACGCAGATGGGAAGGAGATCCCTGCAGTAAAGAGCCCCGCCCCGGCA
GCAGCAGCAGCCAATGCCGTTGTTTCCCCGTCCAACGGCACTGCCACCAG
TCGCTTCGCACGCCAGCAGCCAGTGGCACCGGCTCTGCCTGCTCAGTTCC
CTTCCCTAGCGCGATCCAAATCATCAGCGGCGGAGGAGACCGTTGGGGGC
AAGTTCGCCCCGCTCCCGCGGATGGTGCCGCGCCGCGGGAGCTCCGTGTC
AGCTCCAGGCTCGGGATCCAGCGTCGACGGCAGCTCGTCTTCGCTGAGCT
GGGACGACGTTCAGGACGTGTTCGTGTCGAGCCTTGAGGACGATGTGCTG
TGGAGCTGCGACGACTTCTCAGACGACGACCGGGCGGAGGGCTGGGCATC
GGTGGGGGTTGCGAGCGACAACCGCTCACCCGGCGGTTTTGATTGGATCC
CGTCCTACGTGGAGGAGAACGCGACGCCCTTGAACGATGCGCCAAAGGCG
CTGGAGGCGATACTGATGGCCACCGAACAAGCGTCGGTGTTGACGACCGA
CCAAACCGCTACCACCGCAGCTCCTCGTCCGGCAGGCAGGTTTGCGGGTC
AGCCGCCGCCCTCGGCGGCACTGGCACCGCAAGAGCCAATGATGTACCAG
ATGCTCCCGAGTCGCGCATTTTCCCCGAATGTGGTGTTCGCCCAGCGGAG
CCCGGGTGCCGGCGGCGGCTACGGCGGCGGCTGCGAAAGTAACGGCGGTT
TGCCACCCTCGGCAAAAATCAGCGACGAGGTCGAACCCATCGTCGTCGAC
GTGCTCCCCGCAGCGGGCGGCAGCAGCAGCAGCAGCAGCGGAATGCTCCA
GAACTCTTCCGGAGGAATAAGCGATTCGGAGGCCGCCGACTGCGGGGACG
GCGCGTGCAGCCCTATCTCGGGGTGGACACCGGAGGCGGTCGTGGCCGGC
GCTTCGACGCTCCTCGCTGTGCTCTCCGACGCAGACTTCTGCAGCAGTGT
CCGCAGCGATATTCTGGCGGGTGGCAACGGTTGGGGGGTCGAGCGCAGGC
ACCAGCAACACCAGCAGCAGCGTAACGACGACAGCAGCACGCGCTGGAGC
TGGCCGCCGAGGGACTTGCGCGCGAACTACGGCATGGCACCCCGTTCTCC
TCCGGGTGCCACACCGACGCTCGTCGTCGATGGATCCTGGCACACCCCTA
CTGACGGTGCTGCTGTCTCGGAGAACAACCGTGATCATTGTTACCACCGC
CAACAGCAACGGCAGCAGCAGCAGCAGCAGCAGGGGCTAGCCCTCGCCCC
GCCTGACATCCTTAGCTTGGTCAAAGAGCTGTCAACGCCGTCGGATGGAG
GCGGGACGGCTGCGCGGAGGGGAAAGGGGTCCAAGAGGTACCGCACCGCT
ACGTTGTAG