EsuBft2016_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2016_3a-0001
Unique NameEsuBft2016_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:823420..826927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LST4
ProteomeIdEsuBft2016_3
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSSF82199
Protein domainsSignalP-TM
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR22884
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsG3DSA
Protein domainsIPR001214
Ownerapollo_admin@sb-roscoff.fr
Notehistone-lysine n-methyltransferase 2a os:homo sapiens gn:kmt2a pe:1 sv:5 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1579
Hectar predicted targeting categorysignal peptide
Evalue1.81e-72
EggNOG OGsCOG2940@1|root,KOG1084@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred namerai1
KEGG koko:K19749
GOsGO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044212,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
DescriptionDNA binding
COG categoryU
BRITEko00000,ko03000
Cross References
External references for this mRNA
DatabaseAccession
GO0051568
GO0051704
GO0046872
GO0045893
GO0048584
GO0048869
GO0042802
GO0048856
GO0007275
GO0043232
GO0018024
EC2.1.1.43
GO0043565
GO0018205
GO0035097
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2016_3aEsuBft2016_3aEctocarpus subulatus male Bft15bgeneScaffold_242 823420..826927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2016_3a-0001EsuBft2016_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 823420..825443 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2016_3a-0001-exonagat-exon-95550Ectocarpus subulatus male Bft15bexonScaffold_242 823420..823458 +
EsuBft2016_3a-0001-exonEsuBft2016_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 823741..823866 +
EsuBft2016_3a-0001-exonagat-exon-95551Ectocarpus subulatus male Bft15bexonScaffold_242 824473..824583 +
EsuBft2016_3a-0001-exonagat-exon-95548Ectocarpus subulatus male Bft15bexonScaffold_242 824709..824712 +
EsuBft2016_3a-0001-exonagat-exon-95552Ectocarpus subulatus male Bft15bexonScaffold_242 825271..825780 +
EsuBft2016_3a-0001-exonagat-exon-95549Ectocarpus subulatus male Bft15bexonScaffold_242 826139..826927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2016_3a-0001-cdsEsuBft2016_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 823420..823458 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2016_3a-0001-exonagat-three_prime_utr-7695Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 825444..825780 +
EsuBft2016_3a-0001-exonagat-three_prime_utr-7696Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 826139..826927 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2016_3a-0001 ID=EsuBft2016_3a-0001|Name=EsuBft2016_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1579bp|location=Sequence derived from alignment at Scaffold_242:823420..826927+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTCTGTCTATGCGTGCTCGTCTTCATTCTTGCTCACCACGGACT
GTTTGCCACAAGGGCAATCGCGGCCCAGGAGGTCGTCACCGAGTTCAAGG
GCGAGCTCATCGGCGCCGCTGAGGCACAGCAGCGAGTCGCGCACTACAAC
GATACGGGATTTTCTGGGTGCTTATTACAGGTCGGAAACGACCCCCTGTA
CCTGGACGCCCTGCTGAAGGGGTACCCCACCAGGTTTGTGAACCACTCCT
GCGGTCCAAACGCTTACCTTCATACGGCAGGCAAGGGGGCCGCGCAATCG
AAGCGCATATGGGTATGTTCGATGAAAGAAATCGGAGCTGGGGAAGACCT
GTGCATCACGTACCCCTGGCCGTTCACCATCAGTCCCACAGCGGCAGACA
CGAAGTGCACTTGCGGCGCGCCGGGGTGTCAAGAAGATATTTCGGCCCAA
TGACCTTTGAGAGGAGGGGGATGCGAGGGGAAAGGGCCTCTTATGTGATT
TGCATGTTTGGATGCACATATTTGTTTGTTGTGCAGATTGTGTGGATGTA
GTGCTACCGCCGAAGAACCTGTTGTGGAAGCTCCAATATCATGTTGTACC
TGTTGTACAGAGTTTACGCATCACCGCCGCCAGTGGCGTGGAAAAAAATA
TTTCATGCGATGACGTGTGTTGTTTTAGGATATGTGCTCCATGTACATAG
AGATGCTTTGATGTGTGTGCGAACGCCCTTGGGCGCAAGAGGTTACATAG
GTGATACCATGGTATGAATTATGTGCTGAGCCAATGTCAGGTTCTATCTC
CCCACCTTTCACTTCGCCGTATCTTATCCCTTGAAATGCACATAGTCTCA
AGTCTACACGTGTAGCAAACGACAAGACATGACCGGAAGTGAGGAGGGGC
GATCCGATGTCCCAAAAGGACGGAATCGTTGGCGTCATCACACACACTCA
TGACCCGCTGCTATGCACACCACTAGTCCACTCTTTGTCGCGTCATCGGA
GCTAGCTCTTGCAATCCGACTGTATGCAGACCTTTCGACACCCAACCAAG
ATAATAGTTGTCATCAATGGAGTTCGTTGTTAGGACTTTGTCTGACAATG
GTCAATTATGATCATCAATGGTTCAGTTTTCTCCTGACCCAGAGGACCAC
CACTACAAGATGCATCCAGCGGAGACGCGAGATTTCGTGGGACCCCAAAA
ACGCGGTGGCGCGCGTAGACAGACTCACAATTCGTGGGAGTCCAGATAAT
ACAAAGGGAATGCGGGTGAAACTAAAGCCAAGACGATTGGATTCGATTGT
TCGCACCGAAGTGAGGGCGGTGCGTGCGCATTACATGAGAAACAACGAAA
TAAAACTTCACTATTTCCTGACGACTTAAACCGAGCAAAATCCAAGACCT
GAATAAGATTCAACATTAACGGCGCAAACACCAGGCAACACGCTTAGGCA
CACATATATAAGCGCGGTCGATGCCAATGATAAAAACACATGTATACATA
CAGTTTTGTGACCACGGACCGAGTCTTTGCTAGATTTTGGGATTAGCAAC
TGACACGAGTTAATGTCAAGAAAAACAAC
back to top

protein sequence of EsuBft2016_3a-0001

>EsuBft2016_3 ID=EsuBft2016_3|Name=EsuBft2016_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=150bp
MHLCLCVLVFILAHHGLFATRAIAAQEVVTEFKGELIGAAEAQQRVAHYN
DTGFSGCLLQVGNDPLYLDALLKGYPTRFVNHSCGPNAYLHTAGKGAAQS
KRIWVCSMKEIGAGEDLCITYPWPFTISPTAADTKCTCGAPGCQEDISAQ
back to top

mRNA from alignment at Scaffold_242:823420..826927+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2016_3a-0001 ID=EsuBft2016_3a-0001|Name=EsuBft2016_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3508bp|location=Sequence derived from alignment at Scaffold_242:823420..826927+ (Ectocarpus subulatus male Bft15b)
ATGCACCTCTGTCTATGCGTGCTCGTCTTCATTCTTGCTGTGAGTGCGAG
GGGTTTCCTTTCGTGGTCTGGCACCAATCCCAACACATGATTGGTTCTCT
GCCATTCTCTCTCGGTCAGTGCTTGAAATCAAGGCGTGCGTTAATGTGGT
TCGCGGGTGACCTCGGAACGTCCGTATGAAAGCCATGTTATCTTCCCAAT
TTGGTTTTACGAACGACACTTGCAAGCGGTGCCTCGTTCCTTTCTTTGCT
ACAGTACACTACGCACGCGCCGCCCCGCCCGTACCTGTCGTACTTTGTTG
TGGAAATGCCGACATTCACAGCACCACGGACTGTTTGCCACAAGGGCAAT
CGCGGCCCAGGAGGTCGTCACCGAGTTCAAGGGCGAGCTCATCGGCGCCG
CTGAGGCACAGCAGCGAGTCGCGCACTACAACGATACGGGATTTTCTGTG
AGAGCGAAGGCAGATAGACAAAATAGCTACCATTTCCATTTACAGTTGTA
TCTCTTAGGCGCATGAGTTGTGTATACAAGCGCAAGAGCTGGAAGTGAAA
CAACGTGTGTTGCTGACGCGCCGGCGCTTCGCGTGTGAGTTTCGTGATGA
CACCTGTGGTCTCTATCTTGTGGATACTTCTGCCCGCCCAACACTTTCGC
ACCCATGTTGTATTTTTCTGACACTGGTGCATGCTATACTTCACCTCAGC
TGACGCCTCGAAAGCAAACCTCGTCCGTGCTTTGACGGCATGTGTGTAGG
AAGAAGAGGAACGTGACACCCCCCGTTTTCATACAAGTTCAAGTCCAAGC
CGGGTTGAAGTTGAGGGTTTCTCGCCCTTGCTTTACTTCGCTGTCGAAAA
CATGCTACATTGGCAACAGCAGCAACCATACCCAATGTAAATGTGGACAC
GGCGTGGGTGGATGGTATGGTAGTGTTGTGTCAAACCCGTTCGTTTGGGG
TACGCCAATTGGTCAGTCAGCCCCCCACCCCTTCTCTCCGCTCCCGCCAA
CACCACCCTTCCTTTCCCTTTCCTGGCCTTCCCCGATCTCATCGCTGCCA
CAGGGGTGCTTATTACAGGTCGGAAACGACCCCCTGTACCTGGACGCCCT
GCTGAAGGGGTACCCCACCAGGTTTGTGAACCACTCCTGCGGTCCAAACG
CTTACCTTCATACGGTAAGCAGCGTACAATGTTTCCAACAGTAGACTCCA
CCACTATTTATCAGCCAATAAGATGGGATGGATGGTGCATTGCTGAGAAA
ACATTATGTGAACGTGCATCAAGTCTGCTATCTGTTCAGGCAGGTGCTAT
GCCCGCCCAGGAAGATTGGGTGTTTAATTTTCTTTTGCGTATCGAGGGAG
AAAAGGCCAAAGGGGGAGGGGGCTCCTTCATGGCCCGTCCAGAGCACCCA
TGTTCACGGCGGTTGTGTCATCGGTTCAACTAGGTTTTTGGAATGAAACC
GTTGGTCGGGTTTTCTGTCGTGTGCCCGAGAGCCATACTGCATGTTTATC
GCCCCAACTTCGCCTCGTGTAAAGCCATGTTTGACATAGGCAGGCACTTC
TCTTCTCCATTCACTGGTATACATACATTGTCTTCACCGTGCTTCCCACA
AGCCAGTCCACACACACCGTTGATGCCACCCACCAAGAAGTTTATTTGCA
CGGCACCGTTCCGGGGGAGGGTGACATTTAGCTTTTTTCCTGGAGCAACT
GACTGTTCCCCGGTTAGCGCGGAGGATGCAAGAATCAACCGCTAGCACTC
GAACCCATTCTTATAAACAAGGCGCAACCTTGTGCACACGCCCCTCTCCC
CCCCCCTCCCCCCTTAATGTTGCACCCTAAATATCTGAACGTTTTTCGCA
GGCAAGGGGGCCGCGCAATCGAAGCGCATATGGGTATGTTCGATGAAAGA
AATCGGAGCTGGGGAAGACCTGTGCATCACGTACCCCTGGCCGTTCACCA
TCAGTCCCACAGCGGCAGACACGAAGTGCACTTGCGGCGCGCCGGGGTGT
CAAGAAGATATTTCGGCCCAATGACCTTTGAGAGGAGGGGGATGCGAGGG
GAAAGGGCCTCTTATGTGATTTGCATGTTTGGATGCACATATTTGTTTGT
TGTGCAGATTGTGTGGATGTAGTGCTACCGCCGAAGAACCTGTTGTGGAA
GCTCCAATATCATGTTGTACCTGTTGTACAGAGTTTACGCATCACCGCCG
CCAGTGGCGTGGAAAAAAATATTTCATGCGATGACGTGTGTTGTTTTAGG
ATATGTGCTCCATGTACATAGAGATGCTTTGATGTGTGTGCGAACGCCCT
TGGGCGCAAGAGGTTACATAGGTGATACCATGGTATGAATTATGTGCTGA
GCCAATGTCAGGTACAAAGGTTGGGGGCGTTTTGTTGATTGTTTTTTTGC
GGATCGACGTTTAAATGCAAGAGAATAAATATCTCAACTTTGCCATCGAA
GAAGACGGTTCTTGTGCGAGAAAACGGGAGCACTATGGCGTGAAATTGAA
GGGATACAAAGCATATGTAACCGGTCTCAGAAGCAAATTCGGCACTCCGT
TTCTTCAGTGAATTTATCATGAGGTGGTTGAAGACGTCCACGTGCGGGGC
ACTCGTTTTTGTGTCCCGTACTCATCGTGATGATATAACGTGGTGGTGTA
AGTAAGTTGCTTCCCACGACCCCGACTTGACTGTTCTTTTGCAATTTCAT
GTGATCTCGCCACTGGTAGGTTCTATCTCCCCACCTTTCACTTCGCCGTA
TCTTATCCCTTGAAATGCACATAGTCTCAAGTCTACACGTGTAGCAAACG
ACAAGACATGACCGGAAGTGAGGAGGGGCGATCCGATGTCCCAAAAGGAC
GGAATCGTTGGCGTCATCACACACACTCATGACCCGCTGCTATGCACACC
ACTAGTCCACTCTTTGTCGCGTCATCGGAGCTAGCTCTTGCAATCCGACT
GTATGCAGACCTTTCGACACCCAACCAAGATAATAGTTGTCATCAATGGA
GTTCGTTGTTAGGACTTTGTCTGACAATGGTCAATTATGATCATCAATGG
TTCAGTTTTCTCCTGACCCAGAGGACCACCACTACAAGATGCATCCAGCG
GAGACGCGAGATTTCGTGGGACCCCAAAAACGCGGTGGCGCGCGTAGACA
GACTCACAATTCGTGGGAGTCCAGATAATACAAAGGGAATGCGGGTGAAA
CTAAAGCCAAGACGATTGGATTCGATTGTTCGCACCGAAGTGAGGGCGGT
GCGTGCGCATTACATGAGAAACAACGAAATAAAACTTCACTATTTCCTGA
CGACTTAAACCGAGCAAAATCCAAGACCTGAATAAGATTCAACATTAACG
GCGCAAACACCAGGCAACACGCTTAGGCACACATATATAAGCGCGGTCGA
TGCCAATGATAAAAACACATGTATACATACAGTTTTGTGACCACGGACCG
AGTCTTTGCTAGATTTTGGGATTAGCAACTGACACGAGTTAATGTCAAGA
AAAACAAC
back to top

Coding sequence (CDS) from alignment at Scaffold_242:823420..826927+

>EsuBft2016_3a-0001 ID=EsuBft2016_3a-0001|Name=EsuBft2016_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=453bp|location=Sequence derived from alignment at Scaffold_242:823420..826927+ (Ectocarpus subulatus male Bft15b)
ATGCACCTCTGTCTATGCGTGCTCGTCTTCATTCTTGCTCACCACGGACT
GTTTGCCACAAGGGCAATCGCGGCCCAGGAGGTCGTCACCGAGTTCAAGG
GCGAGCTCATCGGCGCCGCTGAGGCACAGCAGCGAGTCGCGCACTACAAC
GATACGGGATTTTCTGGGTGCTTATTACAGGTCGGAAACGACCCCCTGTA
CCTGGACGCCCTGCTGAAGGGGTACCCCACCAGGTTTGTGAACCACTCCT
GCGGTCCAAACGCTTACCTTCATACGGCAGGCAAGGGGGCCGCGCAATCG
AAGCGCATATGGGTATGTTCGATGAAAGAAATCGGAGCTGGGGAAGACCT
GTGCATCACGTACCCCTGGCCGTTCACCATCAGTCCCACAGCGGCAGACA
CGAAGTGCACTTGCGGCGCGCCGGGGTGTCAAGAAGATATTTCGGCCCAA
TGA
back to top