EsuBft2001_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2001_5a-0001
Unique NameEsuBft2001_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:203047..207639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5Y7
ProteomeIdEsuBft2001_5
Protein domainsIPR000800
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length208
Hectar predicted targeting categoryother localisation
Evalue2.49e-39
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Cross References
External references for this mRNA
DatabaseAccession
GO0030154
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2001_5aEsuBft2001_5aEctocarpus subulatus male Bft15bgeneScaffold_630 203047..207639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2001_5a-0001EsuBft2001_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 203915..207578 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2001_5a-0001-exonagat-exon-70110Ectocarpus subulatus male Bft15bexonScaffold_630 203047..204489 -
EsuBft2001_5a-0001-exonEsuBft2001_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 204602..204808 -
EsuBft2001_5a-0001-exonagat-exon-70111Ectocarpus subulatus male Bft15bexonScaffold_630 205825..206156 -
EsuBft2001_5a-0001-exonagat-exon-70109Ectocarpus subulatus male Bft15bexonScaffold_630 207541..207639 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2001_5a-0001-exonagat-three_prime_utr-7591Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 203047..203914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2001_5a-0001-cdsEsuBft2001_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 203915..204489 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2001_5a-0001-exonagat-five_prime_utr-4930Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 207579..207639 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2001_5a-0001 ID=EsuBft2001_5a-0001|Name=EsuBft2001_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2081bp|location=Sequence derived from alignment at Scaffold_630:203047..207639- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCTCCCCCCCTACACCTTACCTCGCTCGGTCTAGCTGAGTTCTCACGAA
TACGCAGAGGAATGGCTGCTGGCCTTCAGGGACGACGATACCAGCACAGG
AATGGCCGGACGAAGCTTGATTTTGCGACGGCTACAAGTCAGTGGACGAT
CAGCTGCTGGGCCTTCGGGCTCCTGACGCTGTGCCTTTTTTCCCGGGGAA
GCACGTCAACATCCGCCGAGAAGGATGTGGTGAACGCTCGACCAAAATCA
AGAGAGCTTTCCACTTACTATTCATCCTACTACAGCACCTACGACGAGCG
GGAGTACCTCTACGATCGGTATCTCGATGATTGCGCATTTGCCTCTGATT
TGTTCGACTGCTTTTGCCACCCGGAAGATTTTTCCGATGGAGAATGCAAC
TATTTGAACAACTACGAGCTCTGCAACTACGACGGTGGGGATTGCTGTGA
AGAAACATGTATCGATAGCACTTACAAATGCGGAATCTCGGGATACGACT
GCTGGGATCCAGACCAGGAGCGAAAGACGACCGAAGTATCACCGGACTAT
ACCTATCTCTGCAATGATATCTGGTTATCAGATGGACACTGCGATGACGA
CAACAACGTGGAAGAATGCTCTTTCGACGGCGGAGATTGTTGCGTGGACT
CATGTGTGGATGCGAAGTACACCTGCGGTGTCACTTACAGAGACCAATGC
GACCCTCAGTCTTCGGACTGCAATCTTCGGTTGATTTGTTTGGACCCTGT
CTACAAAACGCCCGCGCCGACGCCGACCCTCTTCAATCGCACTTGCCCCG
TTGAAGATATTGGAAATGGTCGGTGCGACGACGAGTATAACAACGAATTC
TGTCTTTTCGATGGTGGCGATTGTTGTGCACCAAGCTGTCTTGGAGAATC
TTGCGGGGCATATGAGTACGACTGCAAAGATCCCAACACTCCGGAGTACG
GCCTTGAGTGCAACATGGATTACGTGGGTGATGGCGAGTGCGACAGCGTT
ACGAATTCCCAAGAGTGCCAGTACGATGGAGGAGACTGCTGCGAACTGAC
GTGCAAGGACTCTGTTTATATGTGTGGAGTAAATTTTTTTAACTGCACGG
GTCCTTTGCCATACAACGCCGCCACAGCGTTGAGCATTCTTGGCTGCTCT
GGTTCATGGCTCCGGTATATTTTGACGGTGATGGTCGCTTCGGTGGGGTG
GGAGATTTGGTGAGAAGGGATTTCTTTGCGCGTCTCCAGGTGTGTGGCTG
TGCGGTACGTTTCGTCAGCAATTCTTCGGCTTTTCTTGCTTAGATATTAT
TTTGTCTCACAGATAATGTTTGCGTGTCTTTCGGAACAGGTTTCGTCAGT
TCCGGCGGCGTCTCGGCAAGGAGGAGTTTTGTCGAGGCTTGGGTACGCGT
GTTGGGAAAGAGGCAATTTTTGGCAGTGGGATGTCTTGAGTCGGTGCTGG
CCTTCAAGCAACTTCCAGACGTCGATTGACAAAGGGTGCCCTATTGGAAC
TAAATACCTCGTTTCTCCGGGGATATACATACGTAGGTGTCGGTTGGTGG
CTTAAATATAGTGCCCAAATTAGAGTTGACGTCTGCTTCGCGCTACGTTT
TGAAGCATCTCAAAGGGAATTCACGGCGAGGTGTGCGATGTCTTGGCTTA
GCCAAACTTTCGGCGGCACACCATCTTCCTGCCTGGAAAACAGCCGTTTG
TCCGAGGATTTTGTCGGGTCCAGCGATAGTTTTCGTGGAGTGCACATATT
TTTCATGGGTCGGGTGTCCTGATGAGAGAAGCAGAGAGATTTGGGTGGGA
GTATGCACAAGCGGCGAGGGCGGGGATTGGTGAGATAAATCGACGAGATT
ATTCACTAAGAAACCCGCCGCAGCACCTATTACTAGTCGTATTTTTCTCT
TATAGCGAGCTTCTTGCATATATTTCTGGCCCTCTGTGGTGTGATGTGTC
ATGTATGCACATACATATATTAGGTGTCTCGAAATGCCTCGTTTTTCTTG
TTCTATTCTGGGCTATCAACAACCATCTCTGTATTATTATTGTCATCTCT
GTATCGTCACCAAATACCAACACCTGTACTT
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protein sequence of EsuBft2001_5a-0001

>EsuBft2001_5 ID=EsuBft2001_5|Name=EsuBft2001_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=383bp
MAAGLQGRRYQHRNGRTKLDFATATSQWTISCWAFGLLTLCLFSRGSTST
SAEKDVVNARPKSRELSTYYSSYYSTYDEREYLYDRYLDDCAFASDLFDC
FCHPEDFSDGECNYLNNYELCNYDGGDCCEETCIDSTYKCGISGYDCWDP
DQERKTTEVSPDYTYLCNDIWLSDGHCDDDNNVEECSFDGGDCCVDSCVD
AKYTCGVTYRDQCDPQSSDCNLRLICLDPVYKTPAPTPTLFNRTCPVEDI
GNGRCDDEYNNEFCLFDGGDCCAPSCLGESCGAYEYDCKDPNTPEYGLEC
NMDYVGDGECDSVTNSQECQYDGGDCCELTCKDSVYMCGVNFFNCTGPLP
YNAATALSILGCSGSWLRYILTVMVASVGWEIW
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mRNA from alignment at Scaffold_630:203047..207639-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2001_5a-0001 ID=EsuBft2001_5a-0001|Name=EsuBft2001_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4593bp|location=Sequence derived from alignment at Scaffold_630:203047..207639- (Ectocarpus subulatus male Bft15b)
CTCTCCCCCCCTACACCTTACCTCGCTCGGTCTAGCTGAGTTCTCACGAA
TACGCAGAGGAATGGCTGCTGGCCTTCAGGGACGACGATACCAGCACAGG
TACGCGAAAAGGGTTCACCAAGGCTGCCACGGAGCAGGGCATAAGAACCG
CCATGTGCCAGCGGCTGTGGGCAAAGCGGGCGGCCCAACTGCAAGTTCTG
CCACAACAGCAGTTGCAACAGAGTAGACGGAGGCTGCACGCGGGATGGTG
TCGCTTCATGTCTTCCGTACATAGCAAAATCTGTCCACTGTAGGGTGCCC
GTAGGCTTTTTGACTGCCCGTGCACCCTGTTTTCGCCGCAAATTACAGTA
CACACACGTGGGAACATAACATACACCTGGCGGAAGGTTACTCCGTGCCC
AGAACTCCCTTCTTCCCGTTTTTGCGGGTGTGACGTTTCTTACTTGCGGG
CGCCCTCTGTAAGGAAGGTTCTCCAGTACCGATGCGCCTGTAGCAAAAGA
TCCACCTGACTGACTGAAGAACAAACCGGCAACAACAACTAGCGACAACA
GCAACGAACGGCGAAGTTGTTACTGGAATAGCTACAGCCGTGGGGGGCAG
GCACGCAAGCGCCCGCAGGGTGTAAAAATTAGGGCGTAAAACGATCGCCC
CGTGGGACCAAGGTGCCACACTACTGGGAGTTTTAGTTGAACGTCCATGG
GCGTCTCATGGGCGTCACATGGGCGTCTCATGGAACACCCATGGAACGCT
CATGGACCCCCATGAGGCCCGCATGACACGCCCATGGGCGTTCCATGAGA
CGCTCTTGGAACTGCCCACGGAATTGCTCATGGGCGGTTTCATGGGCGTC
CGTGGAACGCCCACGAGATGGGTCTTGTACACTAGTGATTGTACATAGTA
TGGCAGCTTCCATGGAAGGACCTAGCCCTAACCAACACTAGGACTTAGAA
CTTAACCGACGCTAGGACCTGGCCCTTTAGCCCTTATTCAACGCCCTGTG
ACCTAGACCTTAACTGACGCCACCTCGATGTGTGGTCTGTCGTCATTGAG
GGTTAGGGGTAGGGGTAGGGGTAGGATTATATGTAGGTTGGGTTGGATAG
GGCAACCAACACCCGTCTCACGGGGGTCCACGGGCGTTCCATGGGCGTTC
CATGAGACGCCCATGAGACGCCAGTGGAACTGCCCATGAGCATTCGCCCA
TGGGCGTTTCATGGAATGCCCGTGGGCACTCGAGCGCCCATGGGCGTCTC
AAGGGCGTCTAGTGGGCGTTCCATGGGCGGCCCATGGTCGTTATACAAAA
ACTGCCGAAAGTGTGACAGCCTCAGTTTGCGGGAATCTTCGAGGTGTTTG
AGCAGGCCAACGCCAGAAAAGGCGAGGCAAGGATAGGCTTAGATTCAATG
CGCTTTTCTGTTGGAGAATTTACAATGTATACACAATTTTCGTTGCTATG
TGCATGTGCCGCCTTTGCTCGCATGTTTCTCAGGAATGGCCGGACGAAGC
TTGATTTTGCGACGGCTACAAGTCAGTGGACGATCAGCTGCTGGGCCTTC
GGGCTCCTGACGCTGTGCCTTTTTTCCCGGGGAAGCACGTCAACATCCGC
CGAGAAGGATGTGGTGAACGCTCGACCAAAATCAAGAGAGCTTTCCACTT
ACTATTCATCCTACTACAGCACCTACGACGAGCGGGAGTACCTCTACGAT
CGGTATCTCGATGATTGCGCATTTGCCTCTGATTTGTTCGACTGCTTTTG
CCACCCGGAAGATTTTTCCGATGGAGAATGCAACTATTTGAACAACTACG
AGCTCTGCAACTACGGTACGTACGGGATTGCGATTTGTTTTTGGTATTCA
TAATAGTTGTTAATCTGCTGATAGTACGATATTCCCGGGGGGGGGGGGGG
GGTCTACTCATTGTCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCA
TCCCTAGATAGCCGGGGCGGAGCACGCCGGGTTCTCACCGGACCAGGCTC
TCACATCACCAAGCGCGAAGCGCCGTGAGATATTCGGCGAGTCGCATGAA
GGGTGCGCTGCATCCTGCTAAGGGTTTTCGGCATCTTGTGCTTACTTCCT
TGCGTACGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGGGGGGGCGGGGGGGAGGGATAAAAAAGTCTAATACA
AAATTGGACGCAATGTTGAACATAGAATACCAATTGAAAAGTATGAATTT
TGAGTTTCGACGTGTACCGATATTGTAGAGTGGTGGAAACCATGAAAAGC
TACATAGGGCACGTTGTTTGTTTGCTCTCTGCGAAGGAAACTAGTGTACG
TAGATGCATCCTTTTCGACGATAACACCGGCGTACCTCGTGTTTGCACGT
TCCCCACCCGTTGTTTGCTTTTTCGTCCAAGACGGTGGGGATTGCTGTGA
AGAAACATGTATCGATAGCACTTACAAATGCGGAATCTCGGGATACGACT
GCTGGGATCCAGACCAGGAGCGAAAGACGACCGAAGTATCACCGGACTAT
ACCTATCTCTGCAATGATATCTGGTTATCAGATGGACACTGCGATGACGA
CAACAACGTGGAAGAATGCTCTTTCGACGGCGGAGATTGTAAGTCACCGA
GAGGATGGCCGTGAGATGGATGCGAGTAGCGTTGGGTTCATGTCTTCCAG
CACCTACCTATGCTGCATGTACTAACACGTACTTCCTCCTTCCTCTCCAG
GTTGCGTGGACTCATGTGTGGATGCGAAGTACACCTGCGGTGTCACTTAC
AGAGACCAATGCGACCCTCAGTCTTCGGACTGCAATCTTCGGTTGATTTG
TTTGGACCCTGTCTACAAAACGCCCGCGCCGACGCCGACCCTCTTCAATC
GCACTTGCCCCGTTGAAGATATTGGAAATGGTCGGTGCGACGACGAGTAT
AACAACGAATTCTGTCTTTTCGATGGTGGCGATTGTTGTGCACCAAGCTG
TCTTGGAGAATCTTGCGGGGCATATGAGTACGACTGCAAAGATCCCAACA
CTCCGGAGTACGGCCTTGAGTGCAACATGGATTACGTGGGTGATGGCGAG
TGCGACAGCGTTACGAATTCCCAAGAGTGCCAGTACGATGGAGGAGACTG
CTGCGAACTGACGTGCAAGGACTCTGTTTATATGTGTGGAGTAAATTTTT
TTAACTGCACGGGTCCTTTGCCATACAACGCCGCCACAGCGTTGAGCATT
CTTGGCTGCTCTGGTTCATGGCTCCGGTATATTTTGACGGTGATGGTCGC
TTCGGTGGGGTGGGAGATTTGGTGAGAAGGGATTTCTTTGCGCGTCTCCA
GGTGTGTGGCTGTGCGGTACGTTTCGTCAGCAATTCTTCGGCTTTTCTTG
CTTAGATATTATTTTGTCTCACAGATAATGTTTGCGTGTCTTTCGGAACA
GGTTTCGTCAGTTCCGGCGGCGTCTCGGCAAGGAGGAGTTTTGTCGAGGC
TTGGGTACGCGTGTTGGGAAAGAGGCAATTTTTGGCAGTGGGATGTCTTG
AGTCGGTGCTGGCCTTCAAGCAACTTCCAGACGTCGATTGACAAAGGGTG
CCCTATTGGAACTAAATACCTCGTTTCTCCGGGGATATACATACGTAGGT
GTCGGTTGGTGGCTTAAATATAGTGCCCAAATTAGAGTTGACGTCTGCTT
CGCGCTACGTTTTGAAGCATCTCAAAGGGAATTCACGGCGAGGTGTGCGA
TGTCTTGGCTTAGCCAAACTTTCGGCGGCACACCATCTTCCTGCCTGGAA
AACAGCCGTTTGTCCGAGGATTTTGTCGGGTCCAGCGATAGTTTTCGTGG
AGTGCACATATTTTTCATGGGTCGGGTGTCCTGATGAGAGAAGCAGAGAG
ATTTGGGTGGGAGTATGCACAAGCGGCGAGGGCGGGGATTGGTGAGATAA
ATCGACGAGATTATTCACTAAGAAACCCGCCGCAGCACCTATTACTAGTC
GTATTTTTCTCTTATAGCGAGCTTCTTGCATATATTTCTGGCCCTCTGTG
GTGTGATGTGTCATGTATGCACATACATATATTAGGTGTCTCGAAATGCC
TCGTTTTTCTTGTTCTATTCTGGGCTATCAACAACCATCTCTGTATTATT
ATTGTCATCTCTGTATCGTCACCAAATACCAACACCTGTACTT
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Coding sequence (CDS) from alignment at Scaffold_630:203047..207639-

>EsuBft2001_5a-0001 ID=EsuBft2001_5a-0001|Name=EsuBft2001_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1152bp|location=Sequence derived from alignment at Scaffold_630:203047..207639- (Ectocarpus subulatus male Bft15b)
ATGGCTGCTGGCCTTCAGGGACGACGATACCAGCACAGGAATGGCCGGAC
GAAGCTTGATTTTGCGACGGCTACAAGTCAGTGGACGATCAGCTGCTGGG
CCTTCGGGCTCCTGACGCTGTGCCTTTTTTCCCGGGGAAGCACGTCAACA
TCCGCCGAGAAGGATGTGGTGAACGCTCGACCAAAATCAAGAGAGCTTTC
CACTTACTATTCATCCTACTACAGCACCTACGACGAGCGGGAGTACCTCT
ACGATCGGTATCTCGATGATTGCGCATTTGCCTCTGATTTGTTCGACTGC
TTTTGCCACCCGGAAGATTTTTCCGATGGAGAATGCAACTATTTGAACAA
CTACGAGCTCTGCAACTACGACGGTGGGGATTGCTGTGAAGAAACATGTA
TCGATAGCACTTACAAATGCGGAATCTCGGGATACGACTGCTGGGATCCA
GACCAGGAGCGAAAGACGACCGAAGTATCACCGGACTATACCTATCTCTG
CAATGATATCTGGTTATCAGATGGACACTGCGATGACGACAACAACGTGG
AAGAATGCTCTTTCGACGGCGGAGATTGTTGCGTGGACTCATGTGTGGAT
GCGAAGTACACCTGCGGTGTCACTTACAGAGACCAATGCGACCCTCAGTC
TTCGGACTGCAATCTTCGGTTGATTTGTTTGGACCCTGTCTACAAAACGC
CCGCGCCGACGCCGACCCTCTTCAATCGCACTTGCCCCGTTGAAGATATT
GGAAATGGTCGGTGCGACGACGAGTATAACAACGAATTCTGTCTTTTCGA
TGGTGGCGATTGTTGTGCACCAAGCTGTCTTGGAGAATCTTGCGGGGCAT
ATGAGTACGACTGCAAAGATCCCAACACTCCGGAGTACGGCCTTGAGTGC
AACATGGATTACGTGGGTGATGGCGAGTGCGACAGCGTTACGAATTCCCA
AGAGTGCCAGTACGATGGAGGAGACTGCTGCGAACTGACGTGCAAGGACT
CTGTTTATATGTGTGGAGTAAATTTTTTTAACTGCACGGGTCCTTTGCCA
TACAACGCCGCCACAGCGTTGAGCATTCTTGGCTGCTCTGGTTCATGGCT
CCGGTATATTTTGACGGTGATGGTCGCTTCGGTGGGGTGGGAGATTTGGT
GA
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