EsuBft199_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft199_7a-0001
Unique NameEsuBft199_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:788809..790381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFK4
ProteomeIdEsuBft199_7
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSSF81324
Protein domainsTMhelix
Protein domainsIPR005821
Protein domainsPTHR10217
Protein domainsG3DSA
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notepotassium voltage-gated channel subfamily h member 2 os:gallus gallus gn:kcnh2 pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1422
Hectar predicted targeting categoryother localisation
Evalue1.71e-183
EggNOG OGsKOG0498@1|root,KOG0498@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionvoltage-gated potassium channel activity
COG categoryU
Cross References
External references for this mRNA
DatabaseAccession
GO1901380
GO0051716
GO0007417
GO0002027
GO0060306
GO0005887
GO0005249
GO0042802
GO0048513
GO0007154
GO0044700
GO0086001
GO0086011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft199_7aEsuBft199_7aEctocarpus subulatus male Bft15bgeneScaffold_499 788809..790381 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_7a-0001-exonagat-exon-107843Ectocarpus subulatus male Bft15bexonScaffold_499 788809..788836 -
EsuBft199_7a-0001-exonagat-exon-107844Ectocarpus subulatus male Bft15bexonScaffold_499 788880..789514 -
EsuBft199_7a-0001-exonEsuBft199_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 789623..790381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_7a-0001-cdsEsuBft199_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 788809..788836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_7a-0001EsuBft199_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 788809..790381 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft199_7a-0001 ID=EsuBft199_7a-0001|Name=EsuBft199_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1422bp|location=Sequence derived from alignment at Scaffold_499:788809..790381- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTCTTCAACAGCATCGAGAACGGGCGCAGGCAGACTGCCAACCT
CGGGGAGACTAGCAACTCGACGGCGACGGCGGTCGCTGGTGGCACCAGCG
GCGGTCGCGATGGCGGCAATATGGTGCCCCCGCGCCACAACCATCGCGAG
CCCCCCAGGCGGCGCCAGAAGGGGCTAGGCCGAGTGGCCCAGGTACCGAT
ACTGTGGAGGCGGCGGGGGCAACAGCGGCAGCCAAGCGGTATTAGGGTAT
CGGGTGCGGGGGATCCGCTGCCGGCGACCCAAGGAGTAGATGATCCCATG
GACTCCTTTCGTCCGGTGACTACCGACGCTGCAGATGGTGCCGTGCTACA
AGACGACGTCCCCGATATTATCGCCAACAAAATCCAGAAACACCACGAGT
TGTGGTACCTGCTAGCGTACGGGAGACCCCGCGATCGCAGGGTTAGCGGG
GGATACGCGTTGCAGCCGGCGAAAATTGGCGGACAATCATTGCCTTGCCC
AAACGCGGAGAATTCAGAGGTCTCGGGCTTGACTCACATCGCTTCGTGGA
AGAGTCGGCCCAGGCTCTGGTCGGACATTGACTCGTCTGTTGCCCGTGCT
GCGGGGGGGCATAGGCCCATTACATCTATCGATTACGGGAATGCTGACGA
AGTAGTTTTGAGCAATACGCAGGAGGCGGACGAGGGCATACTCAAAGCTG
ACGATACACTACCCGCTGGCTCCCCGAAGTTCCTGATCCATCCTTACGAT
AGGCGCAAGTTTTTTCCAAGCACATTATGGCAAGCCTCACGACCGCAACA
CAAAACAACGTCCAAATTCTCTGCCACCAGAACATCGCCCAGTCGCGTAA
CCCCTTGCTGCATTTGCCATTGCCGCACCACCCCGTCGCAGGTCGTTTGG
GACATCTTCGTCACGATCCTGATTGTTTACGGTTGCTTGAACATCCCGCT
CCGCATTGGGTTCGACCTGCCGACGAGCGTAGGGCAGATCATTGCGGATT
CCTTCATCGACATCGTCTTCCTGTCGGACATAATCTTGAGCTTCAGGACC
GTGTATCTCGCTCCAGACGGGGAGCCGGTGACGAGTCCCGGCGAAATCGC
GCTTCGTTATCTCAAGGGCGCGTTTCTGATTGACTTGTGCTCGACGATAC
CCGTAGACCTACTCATGTTGCTGCTGGGGGGCACGAGCGGAATTCTGCGG
TCGACCAAGCTGCTGCGGACGCTGCGGTTGCTGCGGCTGGCGCGGCTCCT
GAAGCTGTCCAAAATTGGCGGCAAGGAGGATGACCTCAAGAACGTCCTGA
ACCCCAGCCTGTGGGCATTGATCAAGATGTTGGTCAGCCTGATTTTCATC
GCGCATATCATGGGCTGCATGTGGAATTGGCTTCTTATCCTCAGGGAGGG
ACGGAGGGAGGGAGGGANNNNN
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protein sequence of EsuBft199_7a-0001

>EsuBft199_7 ID=EsuBft199_7|Name=EsuBft199_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=474bp
MLLFNSIENGRRQTANLGETSNSTATAVAGGTSGGRDGGNMVPPRHNHRE
PPRRRQKGLGRVAQVPILWRRRGQQRQPSGIRVSGAGDPLPATQGVDDPM
DSFRPVTTDAADGAVLQDDVPDIIANKIQKHHELWYLLAYGRPRDRRVSG
GYALQPAKIGGQSLPCPNAENSEVSGLTHIASWKSRPRLWSDIDSSVARA
AGGHRPITSIDYGNADEVVLSNTQEADEGILKADDTLPAGSPKFLIHPYD
RRKFFPSTLWQASRPQHKTTSKFSATRTSPSRVTPCCICHCRTTPSQVVW
DIFVTILIVYGCLNIPLRIGFDLPTSVGQIIADSFIDIVFLSDIILSFRT
VYLAPDGEPVTSPGEIALRYLKGAFLIDLCSTIPVDLLMLLLGGTSGILR
STKLLRTLRLLRLARLLKLSKIGGKEDDLKNVLNPSLWALIKMLVSLIFI
AHIMGCMWNWLLILREGRREGGXX
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mRNA from alignment at Scaffold_499:788809..790381-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft199_7a-0001 ID=EsuBft199_7a-0001|Name=EsuBft199_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1573bp|location=Sequence derived from alignment at Scaffold_499:788809..790381- (Ectocarpus subulatus male Bft15b)
ATGCTGCTCTTCAACAGCATCGAGAACGGGCGCAGGCAGACTGCCAACCT
CGGGGAGACTAGCAACTCGACGGCGACGGCGGTCGCTGGTGGCACCAGCG
GCGGTCGCGATGGCGGCAATATGGTGCCCCCGCGCCACAACCATCGCGAG
CCCCCCAGGCGGCGCCAGAAGGGGCTAGGCCGAGTGGCCCAGGTACCGAT
ACTGTGGAGGCGGCGGGGGCAACAGCGGCAGCCAAGCGGTATTAGGGTAT
CGGGTGCGGGGGATCCGCTGCCGGCGACCCAAGGAGTAGATGATCCCATG
GACTCCTTTCGTCCGGTGACTACCGACGCTGCAGATGGTGCCGTGCTACA
AGACGACGTCCCCGATATTATCGCCAACAAAATCCAGAAACACCACGAGT
TGTGGTACCTGCTAGCGTACGGGAGACCCCGCGATCGCAGGGTTAGCGGG
GGATACGCGTTGCAGCCGGCGAAAATTGGCGGACAATCATTGCCTTGCCC
AAACGCGGAGAATTCAGAGGTCTCGGGCTTGACTCACATCGCTTCGTGGA
AGAGTCGGCCCAGGCTCTGGTCGGACATTGACTCGTCTGTTGCCCGTGCT
GCGGGGGGGCATAGGCCCATTACATCTATCGATTACGGGAATGCTGACGA
AGTAGTTTTGAGCAATACGCAGGAGGCGGACGAGGGCATACTCAAAGCTG
ACGATACACTACCCGCTGGCTCCCCGAAGTTCCTGATCCATCCTTACGAT
AGGCGCAAGGTGCGACCTACAGAGAATCATACGAATAAGGCATGAAAAAC
GGCGAGTATCATGCGAAATGCCATGTGGTGCCCAATATCATGAAATCGGC
CGGTGTGCCACGACAAGTTTTTTCCAAGCACATTATGGCAAGCCTCACGA
CCGCAACACAAAACAACGTCCAAATTCTCTGCCACCAGAACATCGCCCAG
TCGCGTAACCCCTTGCTGCATTTGCCATTGCCGCACCACCCCGTCGCAGG
TCGTTTGGGACATCTTCGTCACGATCCTGATTGTTTACGGTTGCTTGAAC
ATCCCGCTCCGCATTGGGTTCGACCTGCCGACGAGCGTAGGGCAGATCAT
TGCGGATTCCTTCATCGACATCGTCTTCCTGTCGGACATAATCTTGAGCT
TCAGGACCGTGTATCTCGCTCCAGACGGGGAGCCGGTGACGAGTCCCGGC
GAAATCGCGCTTCGTTATCTCAAGGGCGCGTTTCTGATTGACTTGTGCTC
GACGATACCCGTAGACCTACTCATGTTGCTGCTGGGGGGCACGAGCGGAA
TTCTGCGGTCGACCAAGCTGCTGCGGACGCTGCGGTTGCTGCGGCTGGCG
CGGCTCCTGAAGCTGTCCAAAATTGGCGGCAAGGAGGATGACCTCAAGAA
CGTCCTGAACCCCAGCCTGTGGGCATTGATCAAGATGTTGGTCAGCCTGA
TTTTCATCGCGCATATCATGGGCTGCATGTGGAATTGGCTTCTTATCCTC
AGGTTTGCTTCCGTCGATCGTTAAAGGAGGGAGGGGAGGAGGTAGGGAGG
GACGGAGGGAGGGAGGGANNNNN
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Coding sequence (CDS) from alignment at Scaffold_499:788809..790381-

>EsuBft199_7a-0001 ID=EsuBft199_7a-0001|Name=EsuBft199_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1422bp|location=Sequence derived from alignment at Scaffold_499:788809..790381- (Ectocarpus subulatus male Bft15b)
ATGCTGCTCTTCAACAGCATCGAGAACGGGCGCAGGCAGACTGCCAACCT
CGGGGAGACTAGCAACTCGACGGCGACGGCGGTCGCTGGTGGCACCAGCG
GCGGTCGCGATGGCGGCAATATGGTGCCCCCGCGCCACAACCATCGCGAG
CCCCCCAGGCGGCGCCAGAAGGGGCTAGGCCGAGTGGCCCAGGTACCGAT
ACTGTGGAGGCGGCGGGGGCAACAGCGGCAGCCAAGCGGTATTAGGGTAT
CGGGTGCGGGGGATCCGCTGCCGGCGACCCAAGGAGTAGATGATCCCATG
GACTCCTTTCGTCCGGTGACTACCGACGCTGCAGATGGTGCCGTGCTACA
AGACGACGTCCCCGATATTATCGCCAACAAAATCCAGAAACACCACGAGT
TGTGGTACCTGCTAGCGTACGGGAGACCCCGCGATCGCAGGGTTAGCGGG
GGATACGCGTTGCAGCCGGCGAAAATTGGCGGACAATCATTGCCTTGCCC
AAACGCGGAGAATTCAGAGGTCTCGGGCTTGACTCACATCGCTTCGTGGA
AGAGTCGGCCCAGGCTCTGGTCGGACATTGACTCGTCTGTTGCCCGTGCT
GCGGGGGGGCATAGGCCCATTACATCTATCGATTACGGGAATGCTGACGA
AGTAGTTTTGAGCAATACGCAGGAGGCGGACGAGGGCATACTCAAAGCTG
ACGATACACTACCCGCTGGCTCCCCGAAGTTCCTGATCCATCCTTACGAT
AGGCGCAAGTTTTTTCCAAGCACATTATGGCAAGCCTCACGACCGCAACA
CAAAACAACGTCCAAATTCTCTGCCACCAGAACATCGCCCAGTCGCGTAA
CCCCTTGCTGCATTTGCCATTGCCGCACCACCCCGTCGCAGGTCGTTTGG
GACATCTTCGTCACGATCCTGATTGTTTACGGTTGCTTGAACATCCCGCT
CCGCATTGGGTTCGACCTGCCGACGAGCGTAGGGCAGATCATTGCGGATT
CCTTCATCGACATCGTCTTCCTGTCGGACATAATCTTGAGCTTCAGGACC
GTGTATCTCGCTCCAGACGGGGAGCCGGTGACGAGTCCCGGCGAAATCGC
GCTTCGTTATCTCAAGGGCGCGTTTCTGATTGACTTGTGCTCGACGATAC
CCGTAGACCTACTCATGTTGCTGCTGGGGGGCACGAGCGGAATTCTGCGG
TCGACCAAGCTGCTGCGGACGCTGCGGTTGCTGCGGCTGGCGCGGCTCCT
GAAGCTGTCCAAAATTGGCGGCAAGGAGGATGACCTCAAGAACGTCCTGA
ACCCCAGCCTGTGGGCATTGATCAAGATGTTGGTCAGCCTGATTTTCATC
GCGCATATCATGGGCTGCATGTGGAATTGGCTTCTTATCCTCAGGGAGGG
ACGGAGGGAGGGAGGGANNNNN
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