EsuBft199_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft199_6a-0001
Unique NameEsuBft199_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:783153..786702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFK4
ProteomeIdEsuBft199_6
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsIPR013099
Protein domainsTMhelix
Protein domainsSSF81324
Protein domainsIPR018490
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR014710
Protein domainsPTHR10217
Protein domainsG3DSA
Protein domainsTRANSMEMBRANE
Protein domainsIPR000595
Ownerapollo_admin@sb-roscoff.fr
Notepotassium voltage-gated channel subfamily h member 7 os:rattus norvegicus gn:kcnh7 pe:1 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1611
Hectar predicted targeting categorysignal anchor
Evalue2.58e-206
EggNOG OGsKOG0498@1|root,KOG0498@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionvoltage-gated potassium channel activity
COG categoryU
Cross References
External references for this mRNA
DatabaseAccession
GO0050896
GO0044464
GO0016021
GO0005221
GO0008152
GO0065007
GO0000166
GO0006812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft199_6aEsuBft199_6aEctocarpus subulatus male Bft15bgeneScaffold_499 783153..786702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_6a-0001EsuBft199_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 783153..786702 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_6a-0001-exonagat-exon-107840Ectocarpus subulatus male Bft15bexonScaffold_499 783153..783224 -
EsuBft199_6a-0001-exonagat-exon-107842Ectocarpus subulatus male Bft15bexonScaffold_499 783322..784092 -
EsuBft199_6a-0001-exonagat-exon-107841Ectocarpus subulatus male Bft15bexonScaffold_499 785126..785261 -
EsuBft199_6a-0001-exonEsuBft199_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 785535..785719 -
EsuBft199_6a-0001-exonagat-exon-107839Ectocarpus subulatus male Bft15bexonScaffold_499 785949..786176 -
EsuBft199_6a-0001-exonagat-exon-107838Ectocarpus subulatus male Bft15bexonScaffold_499 786484..786702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_6a-0001-cdsEsuBft199_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 783153..783224 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft199_6a-0001 ID=EsuBft199_6a-0001|Name=EsuBft199_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1611bp|location=Sequence derived from alignment at Scaffold_499:783153..786702- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATGGTGTTCTCGTAGGACGACGGTGGGGTACGGCGATATTACTAG
CGCGAGCGATCTCGAGCGGTGTTTTTCTATTGTGGGGATGATTATCGGCG
CGACGGTGTTTGGGTACATCATCGGAAACGTGGCCGCCATCATGGAGAAT
TTCAACGTCACCGACGCCATCGAAAACGGCAAGATGAACCAGATCAAGGA
ATGGCTCTACGACAGAAAGTTTCCTCCAGCGCTGGCGGACAAGATCCGCC
GTCAGTACCGCTACATCTTCACGGAGGTGGGAGTCTTCGACAACTCGGAG
ATCGTGGACGTCATGCCGGGCGTCATGTCGACTTCCCTGCTCTACGCCCA
GCACCGAGCGGTGGCAAAGGGGGTCGGGTTTCTAAGGCAACGCCCGCCGG
TTTTGGTCGGCCGGCTGTTACGGAAGATGGTGCCGTGCTTCGCCAACTGC
GGCGACGTGCTCTACCTCGAGCACGAGGTAGGAGGGCACTGGTATTTCCT
TCGTGCGGGTACCATTTCGTTCTACGTGTCTATGTCTCCGCTGGAGACGC
AGTCCGAGGTGCTGCTGATGCGAAGCTTGTCGGACGATGGACACTTTGGT
CTGACCCCCGTACTGCTTAACGTGCTCAACAGTGAGACGGCCACGGCCAC
GGCGGCCGCAGAGCTGCTGACCATCCGGAAGGTCGACCTTATCGATATCC
TGCAGCACTGGCCGGAGGTAATGGCGGAACTGACGATCGAAGCGGAACGC
CTCTTCAAGGAAGTTAAGGCGGAAGCGGTGGGCGATGTTAGTACTGATGA
CAGCAGTAGTGGAGAGTTGGAGCGAGAGGGACGACGAGAAGCTGAAGGAA
GTGGGGGAGAAGGCTCGAAGGGTGGAGGCGGCGAAGAAGACGAAGAGCGT
CGGGTGGCAAGAAAAGCTGAGGCGGCCGCAATGGCGGGCAAGGGGATAGG
ATTCGACGAGTCGCTCAGGATACCCGGGGTGGCTGGGGCCGAGGAAGCTG
CTGGAGTATTACACGCCGCGGCAACGACGGCGGCAGCTACGACGGCAGTA
GCACCAACAGTGGGAGTGGCAGCAGGCACCACGAACCCGGTTGAGGCTGC
ACGCGGGCGGGCAGCAAAGAAGCTACGTCCGCCACCAATCGTGACCAAGG
ACGCCCCCCTCATATCCCTCGATTTATCGTCCGAAAAGACCCAAGACGAC
GACCACAACAAGAATAGCAATGTTGCCGGTGATGGCAACGACATGTCAGC
GGACCCGGAACACATGCGAAGGTGCTTCGTCGCCAAGACTTTCTCTCCGA
GCGACCTCGGACTTGGGGTCTCCGCGGACGGAGCCTCTACCCCCGAGGCG
GTGACAAAGGCGTCTCTTATGAAGGCCCAGCGCAGGCGACGGACCATCAA
CAAAGGAATAACCGAAATCGATGGCCGAAAGCAGTCTGTGGACGAGGTCT
TGGGTTTGAGTGATGCCCTGCTTGGGAGCATACCCCCTGAACGCCTCTTC
TCGATAACCGGAATGTTTCACCCCGAGGCGCCTATCAAGCTGTGGGTAAA
AATGGCGCTGTTTAGTCCGCGGGCTCGCCCGGACAGGAAGGTCGCGGACG
AGATTGTTTGA
back to top

protein sequence of EsuBft199_6a-0001

>EsuBft199_6 ID=EsuBft199_6|Name=EsuBft199_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=536bp
MRWCSRRTTVGYGDITSASDLERCFSIVGMIIGATVFGYIIGNVAAIMEN
FNVTDAIENGKMNQIKEWLYDRKFPPALADKIRRQYRYIFTEVGVFDNSE
IVDVMPGVMSTSLLYAQHRAVAKGVGFLRQRPPVLVGRLLRKMVPCFANC
GDVLYLEHEVGGHWYFLRAGTISFYVSMSPLETQSEVLLMRSLSDDGHFG
LTPVLLNVLNSETATATAAAELLTIRKVDLIDILQHWPEVMAELTIEAER
LFKEVKAEAVGDVSTDDSSSGELEREGRREAEGSGGEGSKGGGGEEDEER
RVARKAEAAAMAGKGIGFDESLRIPGVAGAEEAAGVLHAAATTAAATTAV
APTVGVAAGTTNPVEAARGRAAKKLRPPPIVTKDAPLISLDLSSEKTQDD
DHNKNSNVAGDGNDMSADPEHMRRCFVAKTFSPSDLGLGVSADGASTPEA
VTKASLMKAQRRRRTINKGITEIDGRKQSVDEVLGLSDALLGSIPPERLF
SITGMFHPEAPIKLWVKMALFSPRARPDRKVADEIV
back to top

mRNA from alignment at Scaffold_499:783153..786702-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft199_6a-0001 ID=EsuBft199_6a-0001|Name=EsuBft199_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3550bp|location=Sequence derived from alignment at Scaffold_499:783153..786702- (Ectocarpus subulatus male Bft15b)
ATGCGATGGTGTTCTCGTAGGACGACGGTGGGGTACGGCGATATTACTAG
CGCGAGCGATCTCGAGCGGTGTTTTTCTATTGTGGGGATGATTATCGGCG
CGACGGTGTTTGGGTACATCATCGGAAACGTGGCCGCCATCATGGAGAAT
TTCAACGTCACCGACGCCATCGAAAACGGCAAGATGAACCAGATCAAGGA
ATGGCTCTACGACAGAAAGGTACATCAACATTTTCATAACAATACTTTTG
GCTCGACTTGCGTTGGTTTGCTTCAAGCTTCACTCACTCACTACTAACGT
TCGATATTGAGAGTTGGGCTCGAATCTCGCATACTGCTGAAAATAGGCCC
CACCAAAGGCGAGCGGTTCTTCTCTGAATTCGTCTGCTGCTCACAACGTA
GATGCGGGCGTGTGCGTGCACGGACCCATTCGTGTCTAGCCGTGGCATAA
CCAGGAGTTTCACTCTGTCCCCTCCACACTTGGTGCACCGATGGCCGTTG
GTGAACGAATACCGCACGCTGCCTAGTTTCCTCCAGCGCTGGCGGACAAG
ATCCGCCGTCAGTACCGCTACATCTTCACGGAGGTGGGAGTCTTCGACAA
CTCGGAGATCGTGGACGTCATGCCGGGCGTCATGTCGACTTCCCTGCTCT
ACGCCCAGCACCGAGCGGTGGCAAAGGGGGTCGGGTTTCTAAGGCAACGC
CCGCCGGTTTTGGTCGGCCGGCTGTTACGGAAGATGGTGCCGTGCTTCGC
CAACGTGAGAAGAGAGAAAGGGGGATCTATTCATTTAGTTGGTGTTGGGC
GTGGGGATGAATCTGTGCAGTTAGCTCAATCTATTGCCGCAGGGATGCTG
TGGTTTCCTTGGTCTTTTCGTCATCCAACCCTATATTGGCCGAGGGTCCT
TGGTACGAAGCGCTGCCGGCCCTGTCCCCAAGAGAAAGTGTTTCACCCCT
CTCCTTCACCGTTTGAACGGCAACCGATGACAGTGCGGCGACGTGCTCTA
CCTCGAGCACGAGGTAGGAGGGCACTGGTATTTCCTTCGTGCGGGTACCA
TTTCGTTCTACGTGTCTATGTCTCCGCTGGAGACGCAGTCCGAGGTGCTG
CTGATGCGAAGCTTGTCGGACGATGGACACTTTGGTCTGACCCCCGTACT
GCTTAACGTGCTCAACAGGTGAGTGTTTTGAGGGGGTAACTTGAAAATGT
GGGTTGGCATGATTGGGGTGCGGTGACAACCGTTGAAGATGGAACATACA
GGGATACACGCAGTGATTGGGGATTTCACGCTCACCACAAAATGCATCAA
GCCCCGCAACACCATCATTCGTCGCCTTAGGTGCCAACGATCTCTCATGC
GTCGTCCGTTAAAGCGTGGCGGCACAGCTTTCACCCACACTCGACTCAGG
TCTTGGCATCCAACGTGGCAAAACGTTTTTATTAATCACAGTGAGACGGC
CACGGCCACGGCGGCCGCAGAGCTGCTGACCATCCGGAAGGTCGACCTTA
TCGATATCCTGCAGCACTGGCCGGAGGTAATGGCGGAACTGACGATCGAA
GCGGAACGCCTCTTCAAGGAAGTTAAGGTTAGTGAGGACCCTACGAAACC
GGCAGCCCCCCTTGCAGGAGCGGGACATTATCGGAGTCGCTTCGCAGCTT
TCAACATGAGACCCTGGCCGCCGCACACGCAAGAACCATACTGCCTTACC
ACCAGATGCTTGGTGTCTGTCATTGTTATGACGCTAGAGCAAAGTGGACC
GACTGATGTCTACCGGGTCAGTCATTTTTATACAACGTTATTGGTGTCAG
GTCAGTGCACAAGTATCCCTGAGGCCGTGGTGAGTGCATTAGGTTCGTGG
GTGTTCGCTGAACACTTGATGGTTGGAGCGCCCTAGAGAACTTACTGTCT
TTGGAAGTTTCCACCTGAAGCTGACACGCAGATTATACCCCCAAGTGTAT
AACACAAGAATCGACTTGTTCGCGATGTGTGGCGCCCCTGTTGTGTACAA
GTGCGTAACGATCGGAATCCCTTGCTGTACTTGCAAGTAATATACGTGCC
TGCCGACTATGAAACGTTTGGATGGCCGGGATGCCCAACCACACTATGTT
ATATCTGGTTTGGCACAGGAAACGCAAGGATGCTTACCAGCTTCTGGTTC
ATCCATGCAAAGCGTAGCCTGGGCCAGCGAAAACTCGGCATATCGCCCCG
TCCCGGCTTTATGGGGATGGGGGGTCAATGGTCTAACGACTGCGGCATGC
GTTTACAAGAGTACCCCCCCCCCTTCTCGCGCTTCACGATTTGACCTCTT
CCAGCAATTTCGTGCGAGGAAGCAATCAGCGAGAGCAAAACTCCAAGCTT
TATCATCTCGCACGGAAAATACCTTAAACGGTTCGTTGGTTGAGTCCGCC
AGGAACAACTCCTCGGACTCTCCAGACACGCACGTCACGCATCCTTCCGC
TCCTGCGGGCGCTGCGTCGGGCGCTGCTGCTGAGGGCCGCGGCGGTAGTT
CGGTGATGAATGAATCCAAGCCTGGCAGAGATGAAAGGGGTTCAAACGAC
AGCGGGAGCGGTGATGATGGTGGTGGTGGTATGTTTTTTCGAGGGGACGA
GAGCAAACAGGCGGAAGCGGTGGGCGATGTTAGTACTGATGACAGCAGTA
GTGGAGAGTTGGAGCGAGAGGGACGACGAGAAGCTGAAGGAAGTGGGGGA
GAAGGCTCGAAGGGTGGAGGCGGCGAAGAAGACGAAGAGCGTCGGGTGGC
AAGAAAAGCTGAGGCGGCCGCAATGGCGGGCAAGGGGATAGGATTCGACG
AGTCGCTCAGGATACCCGGGGTGGCTGGGGCCGAGGAAGCTGCTGGAGTA
TTACACGCCGCGGCAACGACGGCGGCAGCTACGACGGCAGTAGCACCAAC
AGTGGGAGTGGCAGCAGGCACCACGAACCCGGTTGAGGCTGCACGCGGGC
GGGCAGCAAAGAAGCTACGTCCGCCACCAATCGTGACCAAGGACGCCCCC
CTCATATCCCTCGATTTATCGTCCGAAAAGACCCAAGACGACGACCACAA
CAAGAATAGCAATGTTGCCGGTGATGGCAACGACATGTCAGCGGACCCGG
AACACATGCGAAGGTGCTTCGTCGCCAAGACTTTCTCTCCGAGCGACCTC
GGACTTGGGGTCTCCGCGGACGGAGCCTCTACCCCCGAGGCGGTGACAAA
GGCGTCTCTTATGAAGGCCCAGCGCAGGCGACGGACCATCAACAAAGGAA
TAACCGAAATCGATGGCCGAAAGCAGTCTGTGGACGAGGTCTTGGGTTTG
AGTGATGCCCTGCTTGGGAGCATACCCCCTGAACGCCTCTTCTCGATAAC
CGGAATGTTTCACCCCGAGGCGCCTATCAAGGTATGCCATACTTGCGTAC
GTGTGTTTGGTAAAGTACTACCGGTTAGTGTCGACCGCGCCACCGGACCG
ACCAATTGGGAAGTCGTTAGCGGTACAGCTGTGGGTAAAAATGGCGCTGT
TTAGTCCGCGGGCTCGCCCGGACAGGAAGGTCGCGGACGAGATTGTTTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_499:783153..786702-

>EsuBft199_6a-0001 ID=EsuBft199_6a-0001|Name=EsuBft199_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1611bp|location=Sequence derived from alignment at Scaffold_499:783153..786702- (Ectocarpus subulatus male Bft15b)
ATGCGATGGTGTTCTCGTAGGACGACGGTGGGGTACGGCGATATTACTAG
CGCGAGCGATCTCGAGCGGTGTTTTTCTATTGTGGGGATGATTATCGGCG
CGACGGTGTTTGGGTACATCATCGGAAACGTGGCCGCCATCATGGAGAAT
TTCAACGTCACCGACGCCATCGAAAACGGCAAGATGAACCAGATCAAGGA
ATGGCTCTACGACAGAAAGTTTCCTCCAGCGCTGGCGGACAAGATCCGCC
GTCAGTACCGCTACATCTTCACGGAGGTGGGAGTCTTCGACAACTCGGAG
ATCGTGGACGTCATGCCGGGCGTCATGTCGACTTCCCTGCTCTACGCCCA
GCACCGAGCGGTGGCAAAGGGGGTCGGGTTTCTAAGGCAACGCCCGCCGG
TTTTGGTCGGCCGGCTGTTACGGAAGATGGTGCCGTGCTTCGCCAACTGC
GGCGACGTGCTCTACCTCGAGCACGAGGTAGGAGGGCACTGGTATTTCCT
TCGTGCGGGTACCATTTCGTTCTACGTGTCTATGTCTCCGCTGGAGACGC
AGTCCGAGGTGCTGCTGATGCGAAGCTTGTCGGACGATGGACACTTTGGT
CTGACCCCCGTACTGCTTAACGTGCTCAACAGTGAGACGGCCACGGCCAC
GGCGGCCGCAGAGCTGCTGACCATCCGGAAGGTCGACCTTATCGATATCC
TGCAGCACTGGCCGGAGGTAATGGCGGAACTGACGATCGAAGCGGAACGC
CTCTTCAAGGAAGTTAAGGCGGAAGCGGTGGGCGATGTTAGTACTGATGA
CAGCAGTAGTGGAGAGTTGGAGCGAGAGGGACGACGAGAAGCTGAAGGAA
GTGGGGGAGAAGGCTCGAAGGGTGGAGGCGGCGAAGAAGACGAAGAGCGT
CGGGTGGCAAGAAAAGCTGAGGCGGCCGCAATGGCGGGCAAGGGGATAGG
ATTCGACGAGTCGCTCAGGATACCCGGGGTGGCTGGGGCCGAGGAAGCTG
CTGGAGTATTACACGCCGCGGCAACGACGGCGGCAGCTACGACGGCAGTA
GCACCAACAGTGGGAGTGGCAGCAGGCACCACGAACCCGGTTGAGGCTGC
ACGCGGGCGGGCAGCAAAGAAGCTACGTCCGCCACCAATCGTGACCAAGG
ACGCCCCCCTCATATCCCTCGATTTATCGTCCGAAAAGACCCAAGACGAC
GACCACAACAAGAATAGCAATGTTGCCGGTGATGGCAACGACATGTCAGC
GGACCCGGAACACATGCGAAGGTGCTTCGTCGCCAAGACTTTCTCTCCGA
GCGACCTCGGACTTGGGGTCTCCGCGGACGGAGCCTCTACCCCCGAGGCG
GTGACAAAGGCGTCTCTTATGAAGGCCCAGCGCAGGCGACGGACCATCAA
CAAAGGAATAACCGAAATCGATGGCCGAAAGCAGTCTGTGGACGAGGTCT
TGGGTTTGAGTGATGCCCTGCTTGGGAGCATACCCCCTGAACGCCTCTTC
TCGATAACCGGAATGTTTCACCCCGAGGCGCCTATCAAGCTGTGGGTAAA
AATGGCGCTGTTTAGTCCGCGGGCTCGCCCGGACAGGAAGGTCGCGGACG
AGATTGTTTGA
back to top