EsuBft199_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft199_5a-0001
Unique NameEsuBft199_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:780875..782384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft199_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length46
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft199_5aEsuBft199_5aEctocarpus subulatus male Bft15bgeneScaffold_499 780875..782384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_5a-0001EsuBft199_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 780875..781228 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_5a-0001-exonagat-exon-107837Ectocarpus subulatus male Bft15bexonScaffold_499 780875..780880 +
EsuBft199_5a-0001-exonagat-exon-107836Ectocarpus subulatus male Bft15bexonScaffold_499 781097..781265 +
EsuBft199_5a-0001-exonEsuBft199_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 782100..782384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_5a-0001-cdsEsuBft199_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 780875..780880 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_5a-0001-exonagat-three_prime_utr-7579Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 781229..781265 +
EsuBft199_5a-0001-exonagat-three_prime_utr-7580Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 782100..782384 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft199_5a-0001 ID=EsuBft199_5a-0001|Name=EsuBft199_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=460bp|location=Sequence derived from alignment at Scaffold_499:780875..782384+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCGCCCAAGCTTGACGCTAGAGGGACCCAGGGGGGAGCTTTCCT
CCCACTCCTCCATGAAGTCAGGGATCTTGAGCAGGCGGATCAGCCTCATC
AGGCGAACCAGGCGCAGCATGCGAACCAGCCTGGTTGATCTGTTTGTCCG
CATGCGCGCGTAATTTGCACAACATGTACGCCACCGCGACCTGCTTCTGG
TTCGCCACCACCTCCCCGTCCCTGTGGAGAAGAGCCGTGCGTAGGGTGAC
CAGCATGTCCGCGAAGAACAGCGCGTCCACGAAGTACGAGAGCACCTGCC
ACCCGCCCTCGGGTGGGCGATCGAAGCCGAGGCGGTACGTTACCTCAAGC
ACCGACCAGATTATCACCATGGACAACCAGAGGTCCCACGAAACCTGAGC
AACAGCGGCACGGAATTGAGAGTCGTCAGAACACGCGAAACGAAAAGCCA
CCCAGCCCTT
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protein sequence of EsuBft199_5a-0001

>EsuBft199_5 ID=EsuBft199_5|Name=EsuBft199_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=45bp
MTSPKLDARGTQGGAFLPLLHEVRDLEQADQPHQANQAQHANQPG
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mRNA from alignment at Scaffold_499:780875..782384+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft199_5a-0001 ID=EsuBft199_5a-0001|Name=EsuBft199_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1510bp|location=Sequence derived from alignment at Scaffold_499:780875..782384+ (Ectocarpus subulatus male Bft15b)
ATGACGGTAGCACTGGTGTACTTGTGTATACATAGAGCTACTGTCCATTG
TTGCCCACAAAAGTCCACTACCAAGCCGACTAGTTGTCGAGCAAAGGGTA
TGCATGGAGTACTGTGAACAGTCTTTCAGCAACAGCGATTCGTCAGAGGC
CTGCCACATTCTCTCGCTCTCTCACCAGATGCACGCGTTCACGTGCGCCG
AGAAGGCCATGATCACCAGCAGTCGCCCAAGCTTGACGCTAGAGGGACCC
AGGGGGGAGCTTTCCTCCCACTCCTCCATGAAGTCAGGGATCTTGAGCAG
GCGGATCAGCCTCATCAGGCGAACCAGGCGCAGCATGCGAACCAGCCTGG
TTGATCTGTTTGTCCGCATGCGCGCGTAATTTGCACAACATGTGAGTGTC
TCCTTCTCTTCTTGTTGCGGCCATTCTTTTTGCTTCCAGGGTGTAGACGT
GGATTGGTGCATCCCGTCTTCGTCTTCCGTGACGATTCCACTCGATTGTT
TCGAAAACAAGATGCTCGGCTAGGATCTATTTCGTTTCGCCGCCCACGCG
CTAAATCATGCATGATAGTGCACCACTTGAGATCAACGCACTAGTTGTCA
GTTTCCGTCATAGACGGCTCGTTTTTTGTTTTTGTGTGAGTATAAACTGC
TCGGACGTTGGAGAAGTCTATCGAGGGATCGACAGTTTGTTGCTTGACTC
ACGTGGCCGCGTTTGCGTTGCCCACTGCAATCTGCAGCACTAGCAGGTCC
CAAGGGACCGTAGATATCAGATCCACCGTGAACCACCCCTGGTCAATCAG
AACGGTGGGCATCGTCAGACAGTCATAGTCTATACAATAAAGCCCACTGT
CAACCCCAGTGGTGCCAAAAAAGGCTGGTAATCCGTAGTACAAATGGCCG
CAACTATTGGTAGCACGCCGGCAGTGGCTGCGGACGTGCTAGATGTTCTG
GGAAGGAAGGACAAGGTGGGGGCTCTGCTTTGGAATCACAAGGATTTAAG
GGAAGGCAGCTTTGCTACAGCTCTACTCGAGGTTCTGCAGCCATGTCGTA
CTTTGGTCGTCTCGTCGCCCCCCCCCTCCCCCCCCTCCAGGTTCCAGCCT
TGTAATGCAGATCACCTTCAAAATGCTTAAATCTGCCAATGTCGAGATAA
CCTTCATAAAGGCTACAATCTACCAACTTCTATCGAGCATGATTCACTCT
GTTCAGACTTGTCCCTGACCTTCAGGTACGCCACCGCGACCTGCTTCTGG
TTCGCCACCACCTCCCCGTCCCTGTGGAGAAGAGCCGTGCGTAGGGTGAC
CAGCATGTCCGCGAAGAACAGCGCGTCCACGAAGTACGAGAGCACCTGCC
ACCCGCCCTCGGGTGGGCGATCGAAGCCGAGGCGGTACGTTACCTCAAGC
ACCGACCAGATTATCACCATGGACAACCAGAGGTCCCACGAAACCTGAGC
AACAGCGGCACGGAATTGAGAGTCGTCAGAACACGCGAAACGAAAAGCCA
CCCAGCCCTT
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Coding sequence (CDS) from alignment at Scaffold_499:780875..782384+

>EsuBft199_5a-0001 ID=EsuBft199_5a-0001|Name=EsuBft199_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=138bp|location=Sequence derived from alignment at Scaffold_499:780875..782384+ (Ectocarpus subulatus male Bft15b)
ATGACGTCGCCCAAGCTTGACGCTAGAGGGACCCAGGGGGGAGCTTTCCT
CCCACTCCTCCATGAAGTCAGGGATCTTGAGCAGGCGGATCAGCCTCATC
AGGCGAACCAGGCGCAGCATGCGAACCAGCCTGGTTGA
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