EsuBft199_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft199_4a-0001
Unique NameEsuBft199_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:776928..780772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
StatusManually annotated
Seed ortholog2880.D8LFK4
ProteomeIdEsuBft199_4
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsIPR013099
Protein domainsSSF81324
Protein domainsTMhelix
Protein domainsPTHR10217
Protein domainsIPR018490
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsG3DSA
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notepotassium sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 os:mus musculus [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length843
Hectar predicted targeting categoryother localisation
Evalue4.4e-116
EggNOG OGsKOG0498@1|root,KOG0498@2759|Eukaryota
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-04_001880.1
Date last modified2017-01-18
Date creation2016-06-14
DescriptionPutative potassium channel
Descriptionvoltage-gated potassium channel activity
COG categoryU
NoteGroisillier A., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0050789
GO0031227
TCDB1.A.1
GO0005261
GO0030001
GO0005991
GO0009719
GO0005244
GO1901700
GO0055085
GO0097458
GO0046873
GO0015077
GO0015672
GO0010033
GO0034220
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft199_4aEsuBft199_4aEctocarpus subulatus male Bft15bgeneScaffold_499 776928..780772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_4a-0001EsuBft199_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 776928..780772 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_4a-0001-exonEsuBft199_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 776928..777176 -
EsuBft199_4a-0001-exonagat-exon-107833Ectocarpus subulatus male Bft15bexonScaffold_499 777766..777831 -
EsuBft199_4a-0001-exonagat-exon-107829Ectocarpus subulatus male Bft15bexonScaffold_499 778342..778396 -
EsuBft199_4a-0001-exonagat-exon-107834Ectocarpus subulatus male Bft15bexonScaffold_499 778963..779156 -
EsuBft199_4a-0001-exonagat-exon-107830Ectocarpus subulatus male Bft15bexonScaffold_499 779816..779897 -
EsuBft199_4a-0001-exonagat-exon-107831Ectocarpus subulatus male Bft15bexonScaffold_499 780405..780587 -
EsuBft199_4a-0001-exonagat-exon-107835Ectocarpus subulatus male Bft15bexonScaffold_499 780682..780689 -
EsuBft199_4a-0001-exonagat-exon-107832Ectocarpus subulatus male Bft15bexonScaffold_499 780767..780772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_4a-0001-cdsEsuBft199_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 776928..777176 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft199_4a-0001 ID=EsuBft199_4a-0001|Name=EsuBft199_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=843bp|location=Sequence derived from alignment at Scaffold_499:776928..780772- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAGCGAGAGGTACGCGGCGGGGTTGCACACGGCCGCTGAGCACAA
CTGGATCGCCGACTACTACTGCTCGGAGGACGGGGTCTCCGCAGAGTGTC
CCAGCAGCAAGCGGGCCTTCTCTCTGTACCTGACCAGTATCTACTTCGCC
TTTACCACCATGACCACCACGGGATATGGGGACATCTTGCCCAACCGGCT
GTCGGTGATGGAGCTTGTCGTGGCGATAGGTTCCGAGGTGATTGGGGCGA
CAATTTTTGCGTGGGTCATCGGCAACCTGGTTAACCTGGTCCTTAACCTC
GACCCGGCGGAGAGGAACCGGAAGAGCATGATGAACTACCTCACGGAGTA
CATGCGGGAGGTGCCGCTCAGCACCAAGGCCAAGCAGGCTGTGGCAAGAA
ATTATGCCTTCCATCTACAGGTGTTCATTGCTTCAGTCTCACCCATGCGA
GCACACGTGCAGACAGGGAGTGGCGTGTTTAACCAGCCTTCGATCCTGGG
AGACCTCTTACCTCATCTTCAGAACCAGGCCTATATGTTTCTGTGGCGAT
CGCTGATGCCAAAGCTTCCCTTTTTGTGCGCCATGGAAGACCAGGTAACC
GGTTTTGTGCGGGTGGTGCTACCCCTGCTTAAACCCGCCACGTTTGCTTT
GGGCGAGGTGATTGTGACGCCGAAGATCGGCACGAGAGAGATGGGGTTCA
TAATCTGTGGAGAAGTAGAGGTGAAGAACCGTCTAAAGCTTGCTGCTGCG
ACCGCCTCGCGTGACTCCATTTTACGCACTGTGTTTCGCCAACGCCCCTC
CCTGCAACGGCTTCTTCGTATAATGATGCTAACAAAGGCTTGA
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protein sequence of EsuBft199_4a-0001

>EsuBft199_4 ID=EsuBft199_4|Name=EsuBft199_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=280bp
MRSERYAAGLHTAAEHNWIADYYCSEDGVSAECPSSKRAFSLYLTSIYFA
FTTMTTTGYGDILPNRLSVMELVVAIGSEVIGATIFAWVIGNLVNLVLNL
DPAERNRKSMMNYLTEYMREVPLSTKAKQAVARNYAFHLQVFIASVSPMR
AHVQTGSGVFNQPSILGDLLPHLQNQAYMFLWRSLMPKLPFLCAMEDQVT
GFVRVVLPLLKPATFALGEVIVTPKIGTREMGFIICGEVEVKNRLKLAAA
TASRDSILRTVFRQRPSLQRLLRIMMLTKA
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mRNA from alignment at Scaffold_499:776928..780772-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft199_4a-0001 ID=EsuBft199_4a-0001|Name=EsuBft199_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3845bp|location=Sequence derived from alignment at Scaffold_499:776928..780772- (Ectocarpus subulatus male Bft15b)
ATGAGGGTAAGTAAAACAATGCAAATTACTGCCCCCGAGCACCGCGCACG
ACGTGTTTTTGCCTTTGGTGCTCGGAGGCGCAGAGCGAGAGGTATTCGAA
AACACTGGTGGGCAACCAAGTTCCGCTGGAGTATAGAACTCCATCATGCT
CTGTCCTCGGCTTTCCAAAACATGCAAACATGCAGGTACGCGGCGGGGTT
GCACACGGCCGCTGAGCACAACTGGATCGCCGACTACTACTGCTCGGAGG
ACGGGGTCTCCGCAGAGTGTCCCAGCAGCAAGCGGGCCTTCTCTCTGTAC
CTGACCAGTATCTACTTCGCCTTTACCACCATGACCACCACGGGATATGG
GGACATCTTGCCCAACCGGTGAGCATCACTATCTGTATGAAGTGCATGGA
TACACGTGTGGAACACGTCGTACTATCTAGTATATGAGAGTGCTTGGTTC
CATTTCCGAACAAACACGCTAGACCGCCTCCGCGAGAAATCAAGTAGGGA
GGAAATAGTACAGGGACGGGGTACACAGACCCTATCTCTAACCCAACCCT
AACCCAACTTCCCCGATTGTATGCTTTATCCAACATGTTTACTTTCCTAA
TTGAAAAACCCTACGAAGGCTACTGAACACGCTCGAACCTGATGTGTGAT
TCAGGTGCTACCTACTATTCACCGTCCAGTGGGATACGACCGGGGGAGTA
AGACGACCCACACGCCCGGTGTTAGATATCCAACGCCTGGCACATTTCAT
GCCCATCAGTGCTCAATGTGGCCATAGCCAACAGCATGTAGAACGGATGA
CACTTATTTCCTAAAGCATCGAACAGGTTGTGCGTGACAGCATCGCTGAC
AACTGGAGCCTATAACAATGAACAGGCTGTCGGTGATGGAGCTTGTCGTG
GCGATAGGTTCCGAGGTGATTGGGGCGACAATTTTTGCGTGGGTCATCGG
CAACCTGGTGAGACAACATGTTGTGATGTATCATCAACAGATCAAACGTG
TTTCACTTGTTGGTTTCCTCCCAGTCACGCCGTTTGTATAAATGCTGACA
AAGTAAGACTATCGAAACAGTTGGGGGAGTGGGACGGTGTGACGCGGTAC
TCATTTGGATACCCGTCGGAGGAAAGGCTTAGTCTTCCGTCAAAGATGTT
TACCCCAGGTCGCTCCGAAATTTATTTGATATGTTGAGTTCAAGATCTAC
AGCAATAGTGAAGTCTAAGACCCGACCAATCGAGGAGCTTTCTGGCAAGA
CTTTTTTTTTTTTGTACCTCAAAGTGCTTTTGTGAGCTCACGATCTAGCG
AAGGTAGAAAACCCCACTCGCCGGAGAACGTTCTGGCAAAACTTGTGTGC
CACAAAGCGCAATATAATTGTGTGGAGCTCACGATTTACAGTGCAGGTAA
CTGACCCGCCCTCGCACATTTCTGCTTCGAAGCGCACCAAGAAACTCGTT
AGGGACCGTAGTCCGCCCATCCGGAGCGCTCGGAAAGCTTCCAATTGGAG
AGATTTCACGTAGCGTCTGCACATGTAAGTATCTTTTCGTAAGTGCGCAC
GGTATGCCCTTTGTCGCTGTTGAAAAAAAACGATGTGCGGTGGGTGTATT
TTTTGCTACTGTGCAGGTTAACCTGGTCCTTAACCTCGACCCGGCGGAGA
GGAACCGGAAGAGCATGATGAACTACCTCACGGAGTACATGCGGGAGGTG
CCGCTCAGCACCAAGGCCAAGCAGGCTGTGGCAAGAAATTATGCCTTCCA
TCTACAGGTGTTCATTGCTTCAGTCTCACCCATGCGAGCACACGTGCAGA
CAGGGAGTGGGTAGGTTCTCGCATCAACTGCGTTCTCTCCCTCTTAAGTA
TTGTGCGTGCACACACACACAACATGTGGGTCCTCTGGTTTGTGATCCAG
TCCACAAACAGGTGCTAGACGTCGTAGCAACCCCTCGGGCCTCCCATTGC
CGTTTGGCTTGCACAGCGTTCCAGTTTGATTTGCAAAGGGTTGCATCGAA
CTTAGGAACGGCATGCGGTGGAAAGAGAGGCAGAGGAGCATGAAGACAAG
CTACACAGACTTGTAGAGTAGACCATGCCAGAAGCATCATATTGCATCGG
GGCGGGTGGTCAATCCACAGCAGGATATTCACCGCGTGGGCGCAAGCATG
TCCTGAGGCTTTCTCACGAATGTGTGGAGCGGCAGTTAGCGATCATTGTG
CAGCACGGCCCGATATTGTGTCGCGAAATACCGAACAAGTTCTTTGGGAT
CGTGCTCACCTACGCTAGTGTACCCCACACCACGCCAGCCCGTCCCTCAA
GCTTTACTGCCATGCTCGCACTCCCCGTACCAACCTACTGATGACCTTCT
TTTTGTGCTGCGGCGCAGATACATAGCGTGTTTAACCAGCCTTCGATCCT
GGGAGACCTCTTACCTCATCTTCAGAACCAGGTAAAGGATGCGGAAGCAA
ACCAAACAATTGACCCATGCTACATGCTATCCTCGGGCTCGGTTAAACCT
TTCCACTTTTCTGCGGGACGAAACTCGTCTGTTGCGCTGTTAGATAATAC
GCAAGTAGATAGTTGTATCGACGAGTTCCAAACAATGCAACTCCAAGTAT
TTAGTCCACGCGATGAGGCACGGAGGAAACTGCCCCATGTCCTAAAGTAT
GCAAGCTTGCACTCGCATGAAGACCACTGCTTCTTGTTCCACACACATCG
ACGGCTGCCCGGAGTCTTCGGTACAACGCGTTGAGATAGCCCTCTCCTTT
GCGTGAAAGGGCACGACGATTGCTTGCTGCTCCAAGAAAGGCCGGTTCGG
CACAAAACCCTCTTGCACTTGAATGAACGTAACTTGATGCACGGATCCAG
TCAGGCCGTCCTGTGAAACCTACTGCTATTGTGAAACGCATGCCCTGCTC
TCGTGTATGTCCGCTCGTGCACATTTTCTGATATCGCGCAGGCCTATATG
TTTCTGTGGCGATCGCTGATGCCAAAGCTTCCCTTTTTGTGCGCCATGGA
AGACCAGGTAAGCATGCCAACATGGACAAGATATAGAATGTGGTTGACGA
AGAACATTCTGCAGGTGAATAGCCGTGTAACATGAAGGACATCCCTCCAG
ACAATCGTTGGGGAGAATGGGCCCTTTTCATTGCCACCTCCACGTAAATA
TCATGACGCCGAGGTTAAAGAGGGAAATTCAGCCGCCCAGTATAGTTCCT
AAATAAACTGGCGCGAATGGTTCGCGGCAAAGGCGTATAACTACACAGTT
TTTGTGAGGGGTACGTCACGGTTTTGATTTGAACGGCGAAAGTCCCCCGC
GTCTTGCCTTCCATCCAACGGGAGTACGAACAGCCCCAACCTGGTCAATA
AGAAGTCGTCGCAAAAGCAAAAAGTGTCAAAAGTCGCTGGGCAAGATGCC
TACCCCTTCGCTCCCTGTACGCCTCGTCCCTCACGCAACACCATTTGCCC
ACTTCGTCTGGCCGTGCAAGTGCTCAAAGTATTATACCATGCTGTATCCA
CAACAAAACTTGAACAACATTCGCTCTGATGAGTAAGTACATCGTTCGCC
CAAAACGCCTCATCGTTCCTCGCCGGACAATACCCCCCCTGGTCAGGTAA
CCGGTTTTGTGCGGGTGGTGCTACCCCTGCTTAAACCCGCCACGTTTGCT
TTGGGCGAGGTGATTGTGACGCCGAAGATCGGCACGAGAGAGATGGGGTT
CATAATCTGTGGAGAAGTAGAGGTGAAGAACCGTCTAAAGCTTGCTGCTG
CGACCGCCTCGCGTGACTCCATTTTACGCACTGTGTTTCGCCAACGCCCC
TCCCTGCAACGGCTTCTTCGTATAATGATGCTAACAAAGGCTTGA
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Coding sequence (CDS) from alignment at Scaffold_499:776928..780772-

>EsuBft199_4a-0001 ID=EsuBft199_4a-0001|Name=EsuBft199_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=843bp|location=Sequence derived from alignment at Scaffold_499:776928..780772- (Ectocarpus subulatus male Bft15b)
ATGAGGAGCGAGAGGTACGCGGCGGGGTTGCACACGGCCGCTGAGCACAA
CTGGATCGCCGACTACTACTGCTCGGAGGACGGGGTCTCCGCAGAGTGTC
CCAGCAGCAAGCGGGCCTTCTCTCTGTACCTGACCAGTATCTACTTCGCC
TTTACCACCATGACCACCACGGGATATGGGGACATCTTGCCCAACCGGCT
GTCGGTGATGGAGCTTGTCGTGGCGATAGGTTCCGAGGTGATTGGGGCGA
CAATTTTTGCGTGGGTCATCGGCAACCTGGTTAACCTGGTCCTTAACCTC
GACCCGGCGGAGAGGAACCGGAAGAGCATGATGAACTACCTCACGGAGTA
CATGCGGGAGGTGCCGCTCAGCACCAAGGCCAAGCAGGCTGTGGCAAGAA
ATTATGCCTTCCATCTACAGGTGTTCATTGCTTCAGTCTCACCCATGCGA
GCACACGTGCAGACAGGGAGTGGCGTGTTTAACCAGCCTTCGATCCTGGG
AGACCTCTTACCTCATCTTCAGAACCAGGCCTATATGTTTCTGTGGCGAT
CGCTGATGCCAAAGCTTCCCTTTTTGTGCGCCATGGAAGACCAGGTAACC
GGTTTTGTGCGGGTGGTGCTACCCCTGCTTAAACCCGCCACGTTTGCTTT
GGGCGAGGTGATTGTGACGCCGAAGATCGGCACGAGAGAGATGGGGTTCA
TAATCTGTGGAGAAGTAGAGGTGAAGAACCGTCTAAAGCTTGCTGCTGCG
ACCGCCTCGCGTGACTCCATTTTACGCACTGTGTTTCGCCAACGCCCCTC
CCTGCAACGGCTTCTTCGTATAATGATGCTAACAAAGGCTTGA
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