EsuBft199_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft199_2a-0001
Unique Name	EsuBft199_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:766496..768405 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft199_2
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	191
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft199_2a	EsuBft199_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 766496..768405 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_2a-0001-exon	EsuBft199_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 766496..768405 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_2a-0001-exon	agat-three_prime_utr-7577	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 766496..768106 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_2a-0001-cds	EsuBft199_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 768107..768292 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_2a-0001-exon	agat-five_prime_utr-4919	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_499 768293..768405 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_2a-0001	EsuBft199_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 768107..768292 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:766496..768405-
coding sequence from alignment at Scaffold_499:766496..768405-

spliced messenger RNA

>EsuBft199_2a-0001 ID=EsuBft199_2a-0001|Name=EsuBft199_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1910bp|location=Sequence derived from alignment at Scaffold_499:766496..768405- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCGCCGGCGGGTTGACAGTGAGTCCTCTCGAAAGCAATCAGTCACAGGA
CGGGACCGTGTGGACACAAATCCTCTGGACAGAAGAGAATGAGGGGCGGA
TTTGAGTTGTGACATGAGAGGGTCTCCCACACTTTCGGCGGTTTTGCTAA
CCCGCCCATGGGCAAGCCTATGGACAACCTACGCTAGGCACTTCGTGCGC
AGCCCATGCACCGTCAGTGAGTGCCCTTCAGCCGGAAGCAGTGTACTCCT
AAACAATACGTGGAGGTTATCTCTCTTGGTGATAAGCTTGCAGCGGTAGC
GCGTCGGGCTGGACCGCTTTGGACAGCTTACCGCAGGTGCTCGCTGAGAA
GCAAGACAACCTGCTGTATGCGAGAGGTGGACCACTGCCGAGTGCTGTTT
CGCAACTCGGTGACCCTCATAACGTACAAGATGTTGTTGATGATGTCGTT
GATACAGGCTGACCCCAGGGCCTGGTTTTGATTGAAGAATGATGAGAGAG
AGAAGGAGAGAGAGCGAGAGAGTGAGCGAGAGAGAGCTAGAGCGAGCGAG
CGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGCGCGC
GGGCCAGCTCTCGATCACTAGAAACAATAACAACAAAATCTACTGCTGTT
GGAGACCCCGAACAGTCAACCGGCTGTCTTGGGGTTTCCCCAGAAAACTG
TTCTGACCGTTTGCTGACAGTCCCGTGCGGGAACGTGAATCACACAGCAT
GTGGTCTCCACTCTACTGTAACTGCACTTCTACCGGTACCATTCTACAGC
ATAGTCTACACAGACCTAGGGTGCACACACAATGCTACGCCATACCTTGG
GGTACGGCTTCTTTTGTCTATGTTTCCTGCAGCGAACACAGAAGGGATAG
AACTTGGCTACCGTCCCCATGGACAGTTAATGAATAGCCCTTGCAATCCT
TGCAATCCCTGCTTTGTTAAGAACGGGCATTATGACGGGTAAAAACCCAA
CGGTAACGCTAACCCTAACCCTAACCCTAACCCCAAGCCAACACGATACG
TGCTAGGTTGATGTGCCGGTGGCGAAGTTAGGCCAAAGTGCCAACGGGCA
CTTCGTGGGCAGTTCATGGGCTGCCGATGGGCTCAGTCATGGGCAGCTCA
TGGGCCGTCCATGAAGTGCTCGGGCGGTTTATAACTTTGCAACACTGCCA
ATGGTGTGGGAGATTGTGACAAGATGGGGCGACCTTGCGCGGAGCTCGAA
GGTGGGCACGCAGGCACAGCCTGTGGGACACGGGCCAGAGACGCCCCTGA
GCTGGTGTGCTTAAGTTGCATGGCCAGGCAAAAGTCCCGTCGTTGAAGGC
GGGGCGAAAACAGGATCCGCACGACGTACTCGTGCACATGATTTGCGTAC
TACTGTAGCACTCGCGTGCGCATACAAGACAGTCAAGGTCTCCCGGGAGG
AAGCATATGCTCCACAGGGTACTCACCCTACACCTACCTCTATTAAGTAT
CCGAAGATTGAGTAACTCCCCCTCCCTGCAAAACTCTGCAGGGTCAAACA
GCAAACAATCATATCGTGAAGATCATATCTTCTCTTGTTCCGCTGCTGCG
GCGGGTAGGCGGTTGGCTAAAACACGCTACACAATGATTGGGAAAAACAA
ATACGAACACAGAAAGGCCACGCGTTCGAGATACAACAACAGTCGAAAGA
GATGTGTCGGAGTCATTGCAATTAGTGGAGGGAAACCGGCTGCTGCAGGG
GAGTGCGGTCATGCGGCGGAGTTGCAGCGAATGCGGCGGAATTATGGCCG
TTTCGAAACTCCACTGCTGCTTTATGTATGTAGGTGGTTGTGGGGTTGCG
TGGTTGTGCCATGTCGTGGCGTGCCGCATTGTTAAGATGAACAACATATC
CACTATGCTA

protein sequence of EsuBft199_2a-0001

>EsuBft199_2 ID=EsuBft199_2|Name=EsuBft199_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MRGSPTLSAVLLTRPWASLWTTYARHFVRSPCTVSECPSAGSSVLLNNTW
RLSLLVISLQR

mRNA from alignment at Scaffold_499:766496..768405-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft199_2a-0001 ID=EsuBft199_2a-0001|Name=EsuBft199_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1910bp|location=Sequence derived from alignment at Scaffold_499:766496..768405- (Ectocarpus subulatus male Bft15b)
CTCGCCGGCGGGTTGACAGTGAGTCCTCTCGAAAGCAATCAGTCACAGGA
CGGGACCGTGTGGACACAAATCCTCTGGACAGAAGAGAATGAGGGGCGGA
TTTGAGTTGTGACATGAGAGGGTCTCCCACACTTTCGGCGGTTTTGCTAA
CCCGCCCATGGGCAAGCCTATGGACAACCTACGCTAGGCACTTCGTGCGC
AGCCCATGCACCGTCAGTGAGTGCCCTTCAGCCGGAAGCAGTGTACTCCT
AAACAATACGTGGAGGTTATCTCTCTTGGTGATAAGCTTGCAGCGGTAGC
GCGTCGGGCTGGACCGCTTTGGACAGCTTACCGCAGGTGCTCGCTGAGAA
GCAAGACAACCTGCTGTATGCGAGAGGTGGACCACTGCCGAGTGCTGTTT
CGCAACTCGGTGACCCTCATAACGTACAAGATGTTGTTGATGATGTCGTT
GATACAGGCTGACCCCAGGGCCTGGTTTTGATTGAAGAATGATGAGAGAG
AGAAGGAGAGAGAGCGAGAGAGTGAGCGAGAGAGAGCTAGAGCGAGCGAG
CGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGCGCGC
GGGCCAGCTCTCGATCACTAGAAACAATAACAACAAAATCTACTGCTGTT
GGAGACCCCGAACAGTCAACCGGCTGTCTTGGGGTTTCCCCAGAAAACTG
TTCTGACCGTTTGCTGACAGTCCCGTGCGGGAACGTGAATCACACAGCAT
GTGGTCTCCACTCTACTGTAACTGCACTTCTACCGGTACCATTCTACAGC
ATAGTCTACACAGACCTAGGGTGCACACACAATGCTACGCCATACCTTGG
GGTACGGCTTCTTTTGTCTATGTTTCCTGCAGCGAACACAGAAGGGATAG
AACTTGGCTACCGTCCCCATGGACAGTTAATGAATAGCCCTTGCAATCCT
TGCAATCCCTGCTTTGTTAAGAACGGGCATTATGACGGGTAAAAACCCAA
CGGTAACGCTAACCCTAACCCTAACCCTAACCCCAAGCCAACACGATACG
TGCTAGGTTGATGTGCCGGTGGCGAAGTTAGGCCAAAGTGCCAACGGGCA
CTTCGTGGGCAGTTCATGGGCTGCCGATGGGCTCAGTCATGGGCAGCTCA
TGGGCCGTCCATGAAGTGCTCGGGCGGTTTATAACTTTGCAACACTGCCA
ATGGTGTGGGAGATTGTGACAAGATGGGGCGACCTTGCGCGGAGCTCGAA
GGTGGGCACGCAGGCACAGCCTGTGGGACACGGGCCAGAGACGCCCCTGA
GCTGGTGTGCTTAAGTTGCATGGCCAGGCAAAAGTCCCGTCGTTGAAGGC
GGGGCGAAAACAGGATCCGCACGACGTACTCGTGCACATGATTTGCGTAC
TACTGTAGCACTCGCGTGCGCATACAAGACAGTCAAGGTCTCCCGGGAGG
AAGCATATGCTCCACAGGGTACTCACCCTACACCTACCTCTATTAAGTAT
CCGAAGATTGAGTAACTCCCCCTCCCTGCAAAACTCTGCAGGGTCAAACA
GCAAACAATCATATCGTGAAGATCATATCTTCTCTTGTTCCGCTGCTGCG
GCGGGTAGGCGGTTGGCTAAAACACGCTACACAATGATTGGGAAAAACAA
ATACGAACACAGAAAGGCCACGCGTTCGAGATACAACAACAGTCGAAAGA
GATGTGTCGGAGTCATTGCAATTAGTGGAGGGAAACCGGCTGCTGCAGGG
GAGTGCGGTCATGCGGCGGAGTTGCAGCGAATGCGGCGGAATTATGGCCG
TTTCGAAACTCCACTGCTGCTTTATGTATGTAGGTGGTTGTGGGGTTGCG
TGGTTGTGCCATGTCGTGGCGTGCCGCATTGTTAAGATGAACAACATATC
CACTATGCTA

Coding sequence (CDS) from alignment at Scaffold_499:766496..768405-

>EsuBft199_2a-0001 ID=EsuBft199_2a-0001|Name=EsuBft199_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_499:766496..768405- (Ectocarpus subulatus male Bft15b)
ATGAGAGGGTCTCCCACACTTTCGGCGGTTTTGCTAACCCGCCCATGGGC
AAGCCTATGGACAACCTACGCTAGGCACTTCGTGCGCAGCCCATGCACCG
TCAGTGAGTGCCCTTCAGCCGGAAGCAGTGTACTCCTAAACAATACGTGG
AGGTTATCTCTCTTGGTGATAAGCTTGCAGCGGTAG