EsuBft199_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft199_19a-0001
Unique Name	EsuBft199_19a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:952552..955286 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_003372-tr
ProteomeId	EsuBft199_19
Protein domains	PTHR24559
Protein domains	IPR012337
Protein domains	IPR001584
Protein domains	IPR000477
Protein domains	G3DSA
Protein domains	SSF56672
Owner	apollo_admin@sb-roscoff.fr
Note	transposon tf2-9 polyprotein os:schizosaccharomyces pombe (strain 972 atcc 24843) gn:tf2-9 pe:3 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	2682
Hectar predicted targeting category	other localisation
Evalue	3.22e-134
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	K02A2.6-like
COG category	E

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft199_19a	EsuBft199_19a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 952552..955286 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_19a-0001-exon	agat-exon-107933	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 952552..952563 -
EsuBft199_19a-0001-exon	EsuBft199_19a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 952617..955286 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_19a-0001-cds	EsuBft199_19a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 952552..952563 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft199_19a-0001	EsuBft199_19	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 952552..955286 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:952552..955286-
coding sequence from alignment at Scaffold_499:952552..955286-

spliced messenger RNA

>EsuBft199_19a-0001 ID=EsuBft199_19a-0001|Name=EsuBft199_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2682bp|location=Sequence derived from alignment at Scaffold_499:952552..955286- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAAATGGAGAGCCATATAGACACCGTTGCAGGTGCAAAATACAT
CACGGTCTGTGACATTCAGTCAGCTTTCCATCAGTTGCCTATCAACGATA
GACACGAGCAAGACAAAACAGCCTTCGTAACTCGGAATGGGAAATGGGTT
TTCAAACGTCTTCCCTTCGGGATCGCAAACGCACCATTTCTCTTCCAGCG
AACCATGGCTCTAGCTTTTGCTCATTTCGGACCAAAGTCAGGACTTCTCG
TATACATGGATGACCTAATCTGTTGTTCATCAACGTGGGAAGGACACCTA
ACTTTGTTGGAGAACACTTTCAAGGCCTTACAAGCAGCAGGGCTCACCTT
GAAACCCTCCAAGGTACAATTCGGTCCAAAAGAGGTCAAATACCTAGGAC
ACATCCTATCTTCCGATGGGATCCGCCTAGGAGACGATCGGATCCAAGCC
ATCCTCGATCTACCAACGCCGACAAATATCAAAGAACTACGGTCAGTGCT
GGGCATGGTCAATTACGTACGCAAATTCATCCCTGATCTAGCTACGACCA
TCGCCCCTATGGTTGATCTAACAAAGAAAGAATCACTCAAGTCAATCGCG
AAACTCTGGGGTCCCGAACACGATGCAGCATTCGCTAAAGTGAAGAAACT
ACTCACGGAAGCACCTGTCCTGCACTTCCCGGATTTTTCCAAAGAGTTTG
TGATTCATGTCGACGCGTCTGAAACGGGAGCGGGAGCATTCCTAGCCCAA
CGTAACGGCGATGATTTAAACATCATCGCATACTTCAGCCAGCGCTTTAA
CAAGAGCCAACGACACTATTCCGCAACCATGAAAGAATGCTATGCTGTAG
TGTTGGCAATCCAACATTGGAGGCCATATCTATGGGGTAGACACTTCACA
TGCGTCACTGACCACGCGGCGTTACGATACCTCTACACGATGCAAGACAC
TTCGAATATGCTCACACGCTGGGCAATTGCTCTGCAATCATTCGACTTCA
GCGTTCAGCATAAACCGGGGAAACTCAATGTAGTACCCGACACGCTATCG
CGTCTGTTCGTTTTCGAGAAAGATCAAGAACGGAACACACCGACGCTAGC
ACCGATTTGTCGCAACGTACCAGATGACCCGAAACTTCAAACGGCAGTAC
CCACCAGACCGTACCAACTAGACGCTGATCAACTACACAACGTTCGACCT
GTCCACAGCGACCGGGAGTTGTTCACTGTAAGCGCAACCGAGGTGTTTCA
ATCCGTCAATCACGACAAGCTCCGTGAGAAACAGATGGACGAATACGGAG
ATTACATCAAATACATCCTCCATGAAAACGCACCTCTACCAGACAGGGAA
ACAGAAACGACCATGTCATATTATTCCCTACAGGATGGCTTACTGTTTAA
GTCGTACTTGCCTGGACATCTCCGCAAACGAAGCACGTTCATCGATCAGA
TTGTATTACCGCAAGACCTTACAGGCCTAGTAATGCATGCATATCATGAT
CACGCTTTATCAGGAGGTCATCTAGCTTTTCGACCGACATACGAAAAAAT
TAGACAGAAATACTGGTGGCCGTCAATGTCCCGCGACGTGCGCAATTGGT
GCCTTGAGTGCCAAGCATGCCAACGCCGGAAAACACCCCACCGCCGTCCA
AAACTTCCAACAGGCCACGTACCGGTTCAGCAACCCTTTGAACGAATATC
GGTTGATTTGGTGGAGTACAAGACACTCTCCAAGTCACACACCGGCGTAT
ACTGCAAGTATGTGCTGTCGATGATGGACCATCTAACACGGTTCGCCGTC
CTCACACCGATTCCCAACAAATCTGCTGAAACCGTGGCAAACGTGCTAAT
CGAGAAGATAATCAGCATCTTTGGGCCGCCCGAAATGCTACACTCTGATC
AAGGCACCGAATTTGAGAATAAAATTATTCACCAGTTACAATCAGTCCTT
GGATACCAGAAGACCCGAACAACGCCGTATCGGCCGCAGGGTAACTCTGT
GTCAGAACGAGTGCATTCTACTATGCATGCAATGCTCTCTATGCACAGTT
CCATGGAACGAGACAACTGGGCGGAGCTCTTACCTATGGTACAACTAGCG
TACAACACGTCTTTCAACAAAACCATGCACGAGACTCCGTTTTTCTTAAT
GTTCGGTCGCCAAGCACGCCTGCCGGTAGACGTCATCCTTGGTATCCCAC
ACGTAGGATCCTCAGCGGATACCGAAGTGTTCACCAAGACCACACGTGAA
AACCTGCAAACGGCCTACGAACTAGCACGTCAGAACTTGTCTGAGCGAGC
TGCCAAACAAGCTGCACACAACGATAAGTTACCGCAGTTTCCGGTGTTCC
AACCAGGGCAACAAGTGCTACTGTACAAACCGTACCACGACTCAGACGGA
CCAAACCCAAAACTGCTCTTACCGTGGCGTGGGCCGTACACTATTTGTTC
GCAGCTGTCACCAGTTGTGTATCGAGTAAAACGACCTAACGAAACGCGTG
AACTATCCGTTCACCTCGCCCACCTAAAGCAGTACCACGCCAGGCAGGCT
CCACCAGCACCACAGTTCGACAGGCTAGCTGAGTATTTCCTAGGAAAACG
CATTCCCCTGCCTGCAACGGAAAACACTGTCGATCAACCACGTATCGAGA
GATACATCGTTGAGAAAGTGGCTGCGACTTAA

protein sequence of EsuBft199_19a-0001

>EsuBft199_19 ID=EsuBft199_19|Name=EsuBft199_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=893bp
MPEMESHIDTVAGAKYITVCDIQSAFHQLPINDRHEQDKTAFVTRNGKWV
FKRLPFGIANAPFLFQRTMALAFAHFGPKSGLLVYMDDLICCSSTWEGHL
TLLENTFKALQAAGLTLKPSKVQFGPKEVKYLGHILSSDGIRLGDDRIQA
ILDLPTPTNIKELRSVLGMVNYVRKFIPDLATTIAPMVDLTKKESLKSIA
KLWGPEHDAAFAKVKKLLTEAPVLHFPDFSKEFVIHVDASETGAGAFLAQ
RNGDDLNIIAYFSQRFNKSQRHYSATMKECYAVVLAIQHWRPYLWGRHFT
CVTDHAALRYLYTMQDTSNMLTRWAIALQSFDFSVQHKPGKLNVVPDTLS
RLFVFEKDQERNTPTLAPICRNVPDDPKLQTAVPTRPYQLDADQLHNVRP
VHSDRELFTVSATEVFQSVNHDKLREKQMDEYGDYIKYILHENAPLPDRE
TETTMSYYSLQDGLLFKSYLPGHLRKRSTFIDQIVLPQDLTGLVMHAYHD
HALSGGHLAFRPTYEKIRQKYWWPSMSRDVRNWCLECQACQRRKTPHRRP
KLPTGHVPVQQPFERISVDLVEYKTLSKSHTGVYCKYVLSMMDHLTRFAV
LTPIPNKSAETVANVLIEKIISIFGPPEMLHSDQGTEFENKIIHQLQSVL
GYQKTRTTPYRPQGNSVSERVHSTMHAMLSMHSSMERDNWAELLPMVQLA
YNTSFNKTMHETPFFLMFGRQARLPVDVILGIPHVGSSADTEVFTKTTRE
NLQTAYELARQNLSERAAKQAAHNDKLPQFPVFQPGQQVLLYKPYHDSDG
PNPKLLLPWRGPYTICSQLSPVVYRVKRPNETRELSVHLAHLKQYHARQA
PPAPQFDRLAEYFLGKRIPLPATENTVDQPRIERYIVEKVAAT

mRNA from alignment at Scaffold_499:952552..955286-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft199_19a-0001 ID=EsuBft199_19a-0001|Name=EsuBft199_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2735bp|location=Sequence derived from alignment at Scaffold_499:952552..955286- (Ectocarpus subulatus male Bft15b)
ATGCCGGAAATGGAGAGCCATATAGACACCGTTGCAGGTGCAAAATACAT
CACGGTCTGTGACATTCAGTCAGCTTTCCATCAGTTGCCTATCAACGATA
GACACGAGCAAGACAAAACAGCCTTCGTAACTCGGAATGGGAAATGGGTT
TTCAAACGTCTTCCCTTCGGGATCGCAAACGCACCATTTCTCTTCCAGCG
AACCATGGCTCTAGCTTTTGCTCATTTCGGACCAAAGTCAGGACTTCTCG
TATACATGGATGACCTAATCTGTTGTTCATCAACGTGGGAAGGACACCTA
ACTTTGTTGGAGAACACTTTCAAGGCCTTACAAGCAGCAGGGCTCACCTT
GAAACCCTCCAAGGTACAATTCGGTCCAAAAGAGGTCAAATACCTAGGAC
ACATCCTATCTTCCGATGGGATCCGCCTAGGAGACGATCGGATCCAAGCC
ATCCTCGATCTACCAACGCCGACAAATATCAAAGAACTACGGTCAGTGCT
GGGCATGGTCAATTACGTACGCAAATTCATCCCTGATCTAGCTACGACCA
TCGCCCCTATGGTTGATCTAACAAAGAAAGAATCACTCAAGTCAATCGCG
AAACTCTGGGGTCCCGAACACGATGCAGCATTCGCTAAAGTGAAGAAACT
ACTCACGGAAGCACCTGTCCTGCACTTCCCGGATTTTTCCAAAGAGTTTG
TGATTCATGTCGACGCGTCTGAAACGGGAGCGGGAGCATTCCTAGCCCAA
CGTAACGGCGATGATTTAAACATCATCGCATACTTCAGCCAGCGCTTTAA
CAAGAGCCAACGACACTATTCCGCAACCATGAAAGAATGCTATGCTGTAG
TGTTGGCAATCCAACATTGGAGGCCATATCTATGGGGTAGACACTTCACA
TGCGTCACTGACCACGCGGCGTTACGATACCTCTACACGATGCAAGACAC
TTCGAATATGCTCACACGCTGGGCAATTGCTCTGCAATCATTCGACTTCA
GCGTTCAGCATAAACCGGGGAAACTCAATGTAGTACCCGACACGCTATCG
CGTCTGTTCGTTTTCGAGAAAGATCAAGAACGGAACACACCGACGCTAGC
ACCGATTTGTCGCAACGTACCAGATGACCCGAAACTTCAAACGGCAGTAC
CCACCAGACCGTACCAACTAGACGCTGATCAACTACACAACGTTCGACCT
GTCCACAGCGACCGGGAGTTGTTCACTGTAAGCGCAACCGAGGTGTTTCA
ATCCGTCAATCACGACAAGCTCCGTGAGAAACAGATGGACGAATACGGAG
ATTACATCAAATACATCCTCCATGAAAACGCACCTCTACCAGACAGGGAA
ACAGAAACGACCATGTCATATTATTCCCTACAGGATGGCTTACTGTTTAA
GTCGTACTTGCCTGGACATCTCCGCAAACGAAGCACGTTCATCGATCAGA
TTGTATTACCGCAAGACCTTACAGGCCTAGTAATGCATGCATATCATGAT
CACGCTTTATCAGGAGGTCATCTAGCTTTTCGACCGACATACGAAAAAAT
TAGACAGAAATACTGGTGGCCGTCAATGTCCCGCGACGTGCGCAATTGGT
GCCTTGAGTGCCAAGCATGCCAACGCCGGAAAACACCCCACCGCCGTCCA
AAACTTCCAACAGGCCACGTACCGGTTCAGCAACCCTTTGAACGAATATC
GGTTGATTTGGTGGAGTACAAGACACTCTCCAAGTCACACACCGGCGTAT
ACTGCAAGTATGTGCTGTCGATGATGGACCATCTAACACGGTTCGCCGTC
CTCACACCGATTCCCAACAAATCTGCTGAAACCGTGGCAAACGTGCTAAT
CGAGAAGATAATCAGCATCTTTGGGCCGCCCGAAATGCTACACTCTGATC
AAGGCACCGAATTTGAGAATAAAATTATTCACCAGTTACAATCAGTCCTT
GGATACCAGAAGACCCGAACAACGCCGTATCGGCCGCAGGGTAACTCTGT
GTCAGAACGAGTGCATTCTACTATGCATGCAATGCTCTCTATGCACAGTT
CCATGGAACGAGACAACTGGGCGGAGCTCTTACCTATGGTACAACTAGCG
TACAACACGTCTTTCAACAAAACCATGCACGAGACTCCGTTTTTCTTAAT
GTTCGGTCGCCAAGCACGCCTGCCGGTAGACGTCATCCTTGGTATCCCAC
ACGTAGGATCCTCAGCGGATACCGAAGTGTTCACCAAGACCACACGTGAA
AACCTGCAAACGGCCTACGAACTAGCACGTCAGAACTTGTCTGAGCGAGC
TGCCAAACAAGCTGCACACAACGATAAGTTACCGCAGTTTCCGGTGTTCC
AACCAGGGCAACAAGTGCTACTGTACAAACCGTACCACGACTCAGACGGA
CCAAACCCAAAACTGCTCTTACCGTGGCGTGGGCCGTACACTATTTGTTC
GCAGCTGTCACCAGTTGTGTATCGAGTAAAACGACCTAACGAAACGCGTG
AACTATCCGTTCACCTCGCCCACCTAAAGCAGTACCACGCCAGGCAGGCT
CCACCAGCACCACAGTTCGACAGGCTAGCTGAGTATTTCCTAGGAAAACG
CATTCCCCTGCCTGCAACGGAAAACACTGTCGATCAACCACGTATCGAGA
GATACATCGTTGAGAAAGTGGTTAGCCACAAAAGTGGTCGCGGTCGCAAA
AGTCCATACAACTATGCTTACAGGCTGCGACTTAA

Coding sequence (CDS) from alignment at Scaffold_499:952552..955286-

>EsuBft199_19a-0001 ID=EsuBft199_19a-0001|Name=EsuBft199_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2682bp|location=Sequence derived from alignment at Scaffold_499:952552..955286- (Ectocarpus subulatus male Bft15b)
ATGCCGGAAATGGAGAGCCATATAGACACCGTTGCAGGTGCAAAATACAT
CACGGTCTGTGACATTCAGTCAGCTTTCCATCAGTTGCCTATCAACGATA
GACACGAGCAAGACAAAACAGCCTTCGTAACTCGGAATGGGAAATGGGTT
TTCAAACGTCTTCCCTTCGGGATCGCAAACGCACCATTTCTCTTCCAGCG
AACCATGGCTCTAGCTTTTGCTCATTTCGGACCAAAGTCAGGACTTCTCG
TATACATGGATGACCTAATCTGTTGTTCATCAACGTGGGAAGGACACCTA
ACTTTGTTGGAGAACACTTTCAAGGCCTTACAAGCAGCAGGGCTCACCTT
GAAACCCTCCAAGGTACAATTCGGTCCAAAAGAGGTCAAATACCTAGGAC
ACATCCTATCTTCCGATGGGATCCGCCTAGGAGACGATCGGATCCAAGCC
ATCCTCGATCTACCAACGCCGACAAATATCAAAGAACTACGGTCAGTGCT
GGGCATGGTCAATTACGTACGCAAATTCATCCCTGATCTAGCTACGACCA
TCGCCCCTATGGTTGATCTAACAAAGAAAGAATCACTCAAGTCAATCGCG
AAACTCTGGGGTCCCGAACACGATGCAGCATTCGCTAAAGTGAAGAAACT
ACTCACGGAAGCACCTGTCCTGCACTTCCCGGATTTTTCCAAAGAGTTTG
TGATTCATGTCGACGCGTCTGAAACGGGAGCGGGAGCATTCCTAGCCCAA
CGTAACGGCGATGATTTAAACATCATCGCATACTTCAGCCAGCGCTTTAA
CAAGAGCCAACGACACTATTCCGCAACCATGAAAGAATGCTATGCTGTAG
TGTTGGCAATCCAACATTGGAGGCCATATCTATGGGGTAGACACTTCACA
TGCGTCACTGACCACGCGGCGTTACGATACCTCTACACGATGCAAGACAC
TTCGAATATGCTCACACGCTGGGCAATTGCTCTGCAATCATTCGACTTCA
GCGTTCAGCATAAACCGGGGAAACTCAATGTAGTACCCGACACGCTATCG
CGTCTGTTCGTTTTCGAGAAAGATCAAGAACGGAACACACCGACGCTAGC
ACCGATTTGTCGCAACGTACCAGATGACCCGAAACTTCAAACGGCAGTAC
CCACCAGACCGTACCAACTAGACGCTGATCAACTACACAACGTTCGACCT
GTCCACAGCGACCGGGAGTTGTTCACTGTAAGCGCAACCGAGGTGTTTCA
ATCCGTCAATCACGACAAGCTCCGTGAGAAACAGATGGACGAATACGGAG
ATTACATCAAATACATCCTCCATGAAAACGCACCTCTACCAGACAGGGAA
ACAGAAACGACCATGTCATATTATTCCCTACAGGATGGCTTACTGTTTAA
GTCGTACTTGCCTGGACATCTCCGCAAACGAAGCACGTTCATCGATCAGA
TTGTATTACCGCAAGACCTTACAGGCCTAGTAATGCATGCATATCATGAT
CACGCTTTATCAGGAGGTCATCTAGCTTTTCGACCGACATACGAAAAAAT
TAGACAGAAATACTGGTGGCCGTCAATGTCCCGCGACGTGCGCAATTGGT
GCCTTGAGTGCCAAGCATGCCAACGCCGGAAAACACCCCACCGCCGTCCA
AAACTTCCAACAGGCCACGTACCGGTTCAGCAACCCTTTGAACGAATATC
GGTTGATTTGGTGGAGTACAAGACACTCTCCAAGTCACACACCGGCGTAT
ACTGCAAGTATGTGCTGTCGATGATGGACCATCTAACACGGTTCGCCGTC
CTCACACCGATTCCCAACAAATCTGCTGAAACCGTGGCAAACGTGCTAAT
CGAGAAGATAATCAGCATCTTTGGGCCGCCCGAAATGCTACACTCTGATC
AAGGCACCGAATTTGAGAATAAAATTATTCACCAGTTACAATCAGTCCTT
GGATACCAGAAGACCCGAACAACGCCGTATCGGCCGCAGGGTAACTCTGT
GTCAGAACGAGTGCATTCTACTATGCATGCAATGCTCTCTATGCACAGTT
CCATGGAACGAGACAACTGGGCGGAGCTCTTACCTATGGTACAACTAGCG
TACAACACGTCTTTCAACAAAACCATGCACGAGACTCCGTTTTTCTTAAT
GTTCGGTCGCCAAGCACGCCTGCCGGTAGACGTCATCCTTGGTATCCCAC
ACGTAGGATCCTCAGCGGATACCGAAGTGTTCACCAAGACCACACGTGAA
AACCTGCAAACGGCCTACGAACTAGCACGTCAGAACTTGTCTGAGCGAGC
TGCCAAACAAGCTGCACACAACGATAAGTTACCGCAGTTTCCGGTGTTCC
AACCAGGGCAACAAGTGCTACTGTACAAACCGTACCACGACTCAGACGGA
CCAAACCCAAAACTGCTCTTACCGTGGCGTGGGCCGTACACTATTTGTTC
GCAGCTGTCACCAGTTGTGTATCGAGTAAAACGACCTAACGAAACGCGTG
AACTATCCGTTCACCTCGCCCACCTAAAGCAGTACCACGCCAGGCAGGCT
CCACCAGCACCACAGTTCGACAGGCTAGCTGAGTATTTCCTAGGAAAACG
CATTCCCCTGCCTGCAACGGAAAACACTGTCGATCAACCACGTATCGAGA
GATACATCGTTGAGAAAGTGGCTGCGACTTAA