EsuBft1980_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1980_7a-0001
Unique NameEsuBft1980_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_329contigScaffold_329:87942..90220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LR16
ProteomeIdEsuBft1980_7
Protein domainsIPR013830
Protein domainsPTHR11852
Ownerapollo_admin@sb-roscoff.fr
Noteplatelet-activating factor acetylhydrolase ib subunit gamma os:bos taurus gn:pafah1b3 pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length459
Hectar predicted targeting categoryother localisation
Evalue2.46e-76
EggNOG OGsKOG1388@1|root,KOG1388@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00037,RC00094
KEGG koko:K13171,ko:K16795
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko03013,ko03015,map00565,map01100,map03013,map03015
KEGG ModuleM00430
EC3.1.1.47
Descriptionplatelet-activating factor acetyltransferase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Cross References
External references for this mRNA
DatabaseAccession
GO0005975
GO0005737
GO0003824
GO0007399
GO0046983
GO0005794
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_7aEsuBft1980_7aEctocarpus subulatus male Bft15bgeneScaffold_329 87942..90220 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_7a-0001-exonagat-exon-53684Ectocarpus subulatus male Bft15bexonScaffold_329 87942..88094 +
EsuBft1980_7a-0001-exonEsuBft1980_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_329 88927..88974 +
EsuBft1980_7a-0001-exonagat-exon-53686Ectocarpus subulatus male Bft15bexonScaffold_329 89442..89549 +
EsuBft1980_7a-0001-exonagat-exon-53685Ectocarpus subulatus male Bft15bexonScaffold_329 90071..90220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_7a-0001-cdsEsuBft1980_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_329 87942..88094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_7a-0001EsuBft1980_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_329 87942..90220 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1980_7a-0001 ID=EsuBft1980_7a-0001|Name=EsuBft1980_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=459bp|location=Sequence derived from alignment at Scaffold_329:87942..90220+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCGCGTGTCGGCTGCTTGATCCATTTGTCTCCCCAGCGTTATTA
CGCCGACTTGGGGTCCATCAACCTCGGCGTGTCCGGGGATCAGACGCAAC
ACCTTCTTTGGCGGCTGCAGAACGGCGAGCTGCCCGACGTGCTGCAACCC
GAGGGCATGGACGCGCAAGACACGGTCGGAGGAGTCAAGGCCGTCGTCAA
GTACGTGCGAGAGCAAAGGCCCGACGCACTGGTGTCCGTGATGGCCCTAT
TCCCGAGAGCTGACCCCAACGACAAGGAGAACCCAACCCCGTGGCCGGTG
ATCGATGAGGTGAACGGCTTGCTGGAGCACATGCTGAGGCTCAAGTTCGG
CACGAAAAAGGTTCACTTCATTGACTGCAATGACAGGTATGTTGGTACGC
AATACTTCGGCTTCTGTCCGTATGCCCCCCTTCCTCTCGGATTCGTTCGT
ACGGCGTAG
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protein sequence of EsuBft1980_7a-0001

>EsuBft1980_7 ID=EsuBft1980_7|Name=EsuBft1980_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=152bp
MVARVGCLIHLSPQRYYADLGSINLGVSGDQTQHLLWRLQNGELPDVLQP
EGMDAQDTVGGVKAVVKYVREQRPDALVSVMALFPRADPNDKENPTPWPV
IDEVNGLLEHMLRLKFGTKKVHFIDCNDRYVGTQYFGFCPYAPLPLGFVR
TA
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mRNA from alignment at Scaffold_329:87942..90220+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1980_7a-0001 ID=EsuBft1980_7a-0001|Name=EsuBft1980_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2279bp|location=Sequence derived from alignment at Scaffold_329:87942..90220+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCGCGTGTCGGCTGCTTGATCCATTTGTCTCCCCAGCGTTATTA
CGCCGACTTGGGGTCCATCAACCTCGGCGTGTCCGGGGATCAGACGCAAC
ACCTTCTTTGGCGGCTGCAGAACGGCGAGCTGCCCGACGTGCTGCAACCC
GAGGTACTGCTCCCACCACCCTCCCACCTGCCATGGTTGCGCATCTAGAA
CTCCCGATGTGCTCGCCCCATACGCATGCCGCTGCTGTTTGTTACCGCTT
TCGTTCATATAAAGTATATCTAGGGTTTTCACTTCGGCACACCTTCGAGC
CGGTGCTATTCCTCATCTTCCCGCGGTGCCTCGCCCTAGTTTCGCGCCAC
GAGTTTGATCCGCACACATGTGTGCAGTTCCATGAAGGATCCTCTTTCCC
ACTTGTTTTTTGTCCTTTTTTTTTGTCCCTGGCGGGATGAACAGCTTCAC
ATGTTCACGGTTTCCAGGCCGAGGTTGTGCTATAGGTACACCCCCAAACG
AGCAGCTCGGCCTGAAATCCTAAACATCAAGCTTTTCTGTTGTTCAAGCG
TAAATCGTATGCCCGTATGTTGTTGTTGGTTCTCGTTTGGTTCTCGAGCC
GTATGTGCCCGTTTTACAGGGTAACGGCCGACAGGCTTGTAGTCGGGATG
ACGACGCTCGTGTTCCATCGGCGTGCTCGCGCGGATCGCAGCGTGTGCAT
CATCGTTGGTCGGCAGACAGATTTAGGCATCTCCCTACTCGTTCCCTCAC
TCCTGAGGAGACTTTTAGCGCTGCCTTGTGGCGGATACCGTCGTCTTGTC
CTTGTGCCATTGCCTCGCCATCGACCGTTGCTCGTAGTATGCGCGTGCTT
CGCTGCCTCCGCCCCCCCCGGTCGGCGCTTCTATCCCCTGCTGATGGTGC
GCTGTCTTCTGTATTTTTCTCTCTGTCGTCTGTCGGAACCCTGAAGTCTG
TTCTTGTGGCCATCGGGACCAACAACCTCGGGAAGGGCATGGACGCGCAA
GACACGGTCGGAGGAGTCAAGGCCGTCGTCAAGGTACGGAAACATGTATT
CTAGAAGGCGGTAGAGATTTTTCTCACCTGTACCACACATACGCTGTAGC
TGCTGCTGTTGGCCGCAGAGCACCGCTTCACCAATCCTTCCCAAGGGGTT
AAGAGACCGCCGAAGACAAGAGTTTGATTGACTTGCGCAGAGTCGCCCGT
GAGCATGGCATTACTTTCACGCAGGAGAGCATAAACTGTAGTCTATGTAT
ACGCTCTTTGCGTATAGGATCACTTTTCACAACGAGACGGCCCTCTAACG
GAGGTCTTTCCGTCGGTCACCCAACCGAGTCACGGCCGACATCTCGGCAA
GACGCGACACTGGGTGTTGCATGATTTTCGGCGTATGATGTTCCAACTAA
GGAAGATGTCGCGTCTGTCGTTGGTGGCGTGTCTTGCAGTTCATCAAGAT
GTTGCGTCGTGTGTCGTCGATGTGATGGCTGCCTGTCTCGCTCCGCTCAG
TACGTGCGAGAGCAAAGGCCCGACGCACTGGTGTCCGTGATGGCCCTATT
CCCGAGAGCTGACCCCAACGACAAGGAGAACCCAACCCCGTGGCCGGTGA
TCGATGAGGTATGGCCCATATTCTCCTCCTTCGTGTAACTGGACGGGAGT
GTAGTGGAACCTGTGGCAGATGATACCCCCCGCACCAGCTTTACTACCGC
TGGACCTGTCGGAGACTCTTTGGCAACATCCCGTGGAATCAAGCAGACAT
CATGTGCTAAGGTCACAGCAATCCCCTAAGTGTAGCCCCCTATGATTTTA
CCCCGAGTTGCTGCAATTGTTGTTTAGACGGTGCTTGTTCGTTCTCAAGC
ATCCTTGTTCGTAATTCACTGGTTGCTTTCTACAGAGCGCTCCGGCAATG
TTTTCTATTTGTATTCATCTCTGGCTTGTTTGCACGGGACCGGTACATCT
TTCGCTTTCATCTATTTCTATTGTGGTGTTGAATTCACGTAGTTTGCCAT
CGCGTGCTTTCCTGTTGTGAGAACAACATGCACGTGGTGTTTCTGCCTCC
AACGTCATGCATGAGACGCTCACGCAAAAGCTATCGCGGCCGGGATACAT
TTTCGTTGAAATGAATGAACACGACAAAGGTGAACGGCTTGCTGGAGCAC
ATGCTGAGGCTCAAGTTCGGCACGAAAAAGGTTCACTTCATTGACTGCAA
TGACAGGTATGTTGGTACGCAATACTTCGGCTTCTGTCCGTATGCCCCCC
TTCCTCTCGGATTCGTTCGTACGGCGTAG
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Coding sequence (CDS) from alignment at Scaffold_329:87942..90220+

>EsuBft1980_7a-0001 ID=EsuBft1980_7a-0001|Name=EsuBft1980_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=459bp|location=Sequence derived from alignment at Scaffold_329:87942..90220+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCGCGTGTCGGCTGCTTGATCCATTTGTCTCCCCAGCGTTATTA
CGCCGACTTGGGGTCCATCAACCTCGGCGTGTCCGGGGATCAGACGCAAC
ACCTTCTTTGGCGGCTGCAGAACGGCGAGCTGCCCGACGTGCTGCAACCC
GAGGGCATGGACGCGCAAGACACGGTCGGAGGAGTCAAGGCCGTCGTCAA
GTACGTGCGAGAGCAAAGGCCCGACGCACTGGTGTCCGTGATGGCCCTAT
TCCCGAGAGCTGACCCCAACGACAAGGAGAACCCAACCCCGTGGCCGGTG
ATCGATGAGGTGAACGGCTTGCTGGAGCACATGCTGAGGCTCAAGTTCGG
CACGAAAAAGGTTCACTTCATTGACTGCAATGACAGGTATGTTGGTACGC
AATACTTCGGCTTCTGTCCGTATGCCCCCCTTCCTCTCGGATTCGTTCGT
ACGGCGTAG
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