EsuBft1980_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1980_2a-0001
Unique NameEsuBft1980_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_329contigScaffold_329:107220..109204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1980_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length88
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_2aEsuBft1980_2aEctocarpus subulatus male Bft15bgeneScaffold_329 107220..109204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_2a-0001EsuBft1980_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_329 107271..109204 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_2a-0001-exonagat-exon-53682Ectocarpus subulatus male Bft15bexonScaffold_329 107220..107560 +
EsuBft1980_2a-0001-exonagat-exon-53681Ectocarpus subulatus male Bft15bexonScaffold_329 108515..108804 +
EsuBft1980_2a-0001-exonEsuBft1980_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_329 108884..109126 +
EsuBft1980_2a-0001-exonagat-exon-53680Ectocarpus subulatus male Bft15bexonScaffold_329 109194..109204 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_2a-0001-exonagat-five_prime_utr-4841Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_329 107220..107270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_2a-0001-cdsEsuBft1980_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_329 107271..107560 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1980_2a-0001 ID=EsuBft1980_2a-0001|Name=EsuBft1980_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=885bp|location=Sequence derived from alignment at Scaffold_329:107220..109204+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAGGTATCCAAGAGCCCGAAGAGGTACACCTAAAAATCCCTGCAGCACCG
TATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACA
GTAGCATCACCCCCTCCCTGTCCCACTCTATACCAAAACGGAAGATTGCC
GACTACAGCATACTGCTGTCTGAAGTGCTGTCTGTACAAAAACACCATGG
TAGGCATGGAACAANATCGACAATAGCTAAGAATCGTTCCACATTGAAGG
GGTCTTCCACGATCAGGCACAAAACCAATGCACCCGGGTCAGCCACGCCA
TCTCTGACGGGACTCTCTACAAAACCGGTGACGACGTTGTGGTGCCGACG
GAGCACTCGAGCATTCCCGAGCGGAGCGTGGATTCCGGACGACCCGGTCG
GTACGGGTCCGGCGCGGGAGTTGTCTGTGCCTCCCGTGTCGGGGAGCGCT
GCCGCACCGGCCCGCGAGGAAACCGGCGACTCGGTGTCTCTCGCCAGGGA
AGTCGCTACCATCATGGCACAGGGGTCCGGCTCCACGTTCGACCAAGCCA
TGGCGATGGCGCTCGCGACGAAAAAGTGCAAGGACTGCACGCCGTCCAGC
GGATCGGAGGACGGCGAGTACCGCCGCGGAGGAAGCATTACCGGGGTGGG
GACTCCAGTGACGGGTGGCCTGCGTCGGACTCTGCCGGCGAGCACCGTGG
TGGTGGTCGCGGACAGTGCTATGGCCATGGCGGCGGACGTTACTGCTCGG
GCAAAGAGCGGACTGTTCACCAGCATTCCGGTGGGAGCGGGGACTCGGAT
GGGCATGGCCGCGGGTTTGGCGGCCGCGCACGTGGCTCTCGAGGACGTGG
AGGCCGTGGTGGCGGACGGGGCAGGTGTCCCTTGA
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protein sequence of EsuBft1980_2a-0001

>EsuBft1980_2 ID=EsuBft1980_2|Name=EsuBft1980_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=277bp
MRAQKLNCTSVPPFDYSSITPSLSHSIPKRKIADYSILLSEVLSVQKHHG
RHGTXSTIAKNRSTLKGSSTIRHKTNAPGSATPSLTGLSTKPVTTLWCRR
STRAFPSGAWIPDDPVGTGPARELSVPPVSGSAAAPAREETGDSVSLARE
VATIMAQGSGSTFDQAMAMALATKKCKDCTPSSGSEDGEYRRGGSITGVG
TPVTGGLRRTLPASTVVVVADSAMAMAADVTARAKSGLFTSIPVGAGTRM
GMAAGLAAAHVALEDVEAVVADGAGVP
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mRNA from alignment at Scaffold_329:107220..109204+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1980_2a-0001 ID=EsuBft1980_2a-0001|Name=EsuBft1980_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1985bp|location=Sequence derived from alignment at Scaffold_329:107220..109204+ (Ectocarpus subulatus male Bft15b)
AAGGTATCCAAGAGCCCGAAGAGGTACACCTAAAAATCCCTGCAGCACCG
TATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACA
GTAGCATCACCCCCTCCCTGTCCCACTCTATACCAAAACGGAAGATTGCC
GACTACAGCATACTGCTGTCTGAAGTGCTGTCTGTACAAAAACACCATGG
TAGGCATGGAACAANATCGACAATAGCTAAGAATCGTTCCACATTGAAGG
GGTCTTCCACGATCAGGCACAAAACCAATGCACCCGGGTCAGCCACGCCA
TCTCTGACGGGACTCTCTACAAAACCGGTGACGACGTTGTGGTGAGAATG
GGTTTCAGTCTAGTTCGTGGGGCGTTATTGGNTCCCGATCGTCTGCGTTA
GGCACGCAGTGAAAACATCGACACTAGCTAAGAATCGTTCCACATTGAAG
GGGTCTTCCACGATCAGGCACAAAACCAATGCACCCGGGTCAGCCACGCC
ATCTCTGACGGGACTCTCTACAAAACCGGTGACGACGTTGTGGTGAGAAT
GGGTTTCAGTCTAGTTCGTGGGGCGTTATTGGTTATTATCTGAAACGGTC
GACACAATTCTGAGTGTCTAGATGACTGGACCGACCAACCAAGCAGCGTA
GACCTAGGGCTGATGTAGCCAGCTGGATGCATCGGACCTAGGGCCCAGGC
AATAACCAGCGTAGACCCAGGATTATGAGAGTTAGCCAGTAACATGTGTT
TGTGCATTTCATTGGATTAAGGCAACCAATCAGATGGTTGTGTAGTAGGA
GAATCGCAGACCACGGACTGACGTGTGACTGTTTGTAACGCTTGGTTGCA
GTTGGATCCGTCCGGAAGCTTGGCTCCGTTAAGCCTCGCACATGAATCAC
TCATAAAGCTTTGCCCTCAGTCTCGCCGTACAGAGCTGATTGCAAGATTG
CCGAGAGTCAATAATGAGACACCCAAAACAACCGTGCCGAACACAAGACG
CTTGAACACAAGCACATGCACTTCTGACAAGGCTGAGCCTGTTAGCAAGG
AAGAGGCAGAACCAGTACCCCAGAGTACCAGTTATCTCCACAGTGGCGTC
GTCGGCTTCAAGCTTTATCTAGCTTGCTTGTGCGTCGAGTGTCCACGGTT
GGGGTCGTCTGAAAACCGGCAGACAGTCGATACGCGCGACTGTCGATACG
CACGACGTACCGCTAGGGTACCGCGCAACGGGGCTGAGGCCGCCGAGAAA
ATCGCTACCCCCGAAGAAGGGAGCGTGAGCCCGATTGCAATCGAGGTGCC
GACGGAGCACTCGAGCATTCCCGAGCGGAGCGTGGATTCCGGACGACCCG
GTCGGTACGGGTCCGGCGCGGGAGTTGTCTGTGCCTCCCGTGTCGGGGAG
CGCTGCCGCACCGGCCCGCGAGGAAACCGGCGACTCGGTGTCTCTCGCCA
GGGAAGTCGCTACCATCATGGCACAGGGGTCCGGCTCCACGTTCGACCAA
GCCATGGCGATGGCGCTCGCGACGAAAAAGTGCAAGGACTGCACGCCGTC
CAGCGGATCGGAGGACGGCGAGTACCGCCGCGGAGGTGGGAGTCGCCGTG
GCAGTCACGGTGGACGGGCCGGTCATGGTGATCGTGGTGGAGGTGCCCGC
GGACGCTCCGGCAGGAAGCATTACCGGGGTGGGGACTCCAGTGACGGGTG
GCCTGCGTCGGACTCTGCCGGCGAGCACCGTGGTGGTGGTCGCGGACAGT
GCTATGGCCATGGCGGCGGACGTTACTGCTCGGGCAAAGAGCGGACTGTT
CACCAGCATTCCGGTGGGAGCGGGGACTCGGATGGGCATGGCCGCGGGTT
TGGCGGCCGCGCACGTGGCTCTCGAGGACGTGGAGGCCGTGGTGGCGGAC
GGGGCAGGTATGAAACCGATAGTGGTAGCGGTAGCGACGACGAGGAGGCT
CGTTTCGTCGGGAAACACGGTCAGGTGTCCCTTGA
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Coding sequence (CDS) from alignment at Scaffold_329:107220..109204+

>EsuBft1980_2a-0001 ID=EsuBft1980_2a-0001|Name=EsuBft1980_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=834bp|location=Sequence derived from alignment at Scaffold_329:107220..109204+ (Ectocarpus subulatus male Bft15b)
ATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACAG
TAGCATCACCCCCTCCCTGTCCCACTCTATACCAAAACGGAAGATTGCCG
ACTACAGCATACTGCTGTCTGAAGTGCTGTCTGTACAAAAACACCATGGT
AGGCATGGAACAANATCGACAATAGCTAAGAATCGTTCCACATTGAAGGG
GTCTTCCACGATCAGGCACAAAACCAATGCACCCGGGTCAGCCACGCCAT
CTCTGACGGGACTCTCTACAAAACCGGTGACGACGTTGTGGTGCCGACGG
AGCACTCGAGCATTCCCGAGCGGAGCGTGGATTCCGGACGACCCGGTCGG
TACGGGTCCGGCGCGGGAGTTGTCTGTGCCTCCCGTGTCGGGGAGCGCTG
CCGCACCGGCCCGCGAGGAAACCGGCGACTCGGTGTCTCTCGCCAGGGAA
GTCGCTACCATCATGGCACAGGGGTCCGGCTCCACGTTCGACCAAGCCAT
GGCGATGGCGCTCGCGACGAAAAAGTGCAAGGACTGCACGCCGTCCAGCG
GATCGGAGGACGGCGAGTACCGCCGCGGAGGAAGCATTACCGGGGTGGGG
ACTCCAGTGACGGGTGGCCTGCGTCGGACTCTGCCGGCGAGCACCGTGGT
GGTGGTCGCGGACAGTGCTATGGCCATGGCGGCGGACGTTACTGCTCGGG
CAAAGAGCGGACTGTTCACCAGCATTCCGGTGGGAGCGGGGACTCGGATG
GGCATGGCCGCGGGTTTGGCGGCCGCGCACGTGGCTCTCGAGGACGTGGA
GGCCGTGGTGGCGGACGGGGCAGGTGTCCCTTGA
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