EsuBft1973_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1973_4a-0001
Unique NameEsuBft1973_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:156606..158066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1973_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length72
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1973_4aEsuBft1973_4aEctocarpus subulatus male Bft15bgeneScaffold_347 156606..158066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1973_4a-0001EsuBft1973_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 157902..158066 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1973_4a-0001-exonagat-exon-75678Ectocarpus subulatus male Bft15bexonScaffold_347 156606..156974 -
EsuBft1973_4a-0001-exonagat-exon-75676Ectocarpus subulatus male Bft15bexonScaffold_347 157347..157370 -
EsuBft1973_4a-0001-exonagat-exon-75679Ectocarpus subulatus male Bft15bexonScaffold_347 157492..157698 -
EsuBft1973_4a-0001-exonEsuBft1973_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 157848..157941 -
EsuBft1973_4a-0001-exonagat-exon-75677Ectocarpus subulatus male Bft15bexonScaffold_347 158035..158066 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1973_4a-0001-exonagat-three_prime_utr-7388Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 156606..156974 -
EsuBft1973_4a-0001-exonagat-three_prime_utr-7389Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 157347..157370 -
EsuBft1973_4a-0001-exonagat-three_prime_utr-7390Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 157492..157698 -
EsuBft1973_4a-0001-exonagat-three_prime_utr-7391Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 157848..157901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1973_4a-0001-cdsEsuBft1973_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 157902..157941 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1973_4a-0001 ID=EsuBft1973_4a-0001|Name=EsuBft1973_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=726bp|location=Sequence derived from alignment at Scaffold_347:156606..158066- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCGAGGCAGCCGAATCAGAAGCACGAATATCTTTTGGATTTCCG
TTGGCACGACAAGCCCTGCTAATGCGTACGGGGGCCTTGCCGGATAATCC
CCGCGGTCTTCGATAGTGACTGGGTGGACGAAAACACACACACAACACAC
AAACACGGGTGGCAAGAAAACAAAGAAAAAGAACATCACGACGTGAAACG
TGCGTTTCCTCCCAAAGCGTCGAAAGGAAAACTCAAGGTGCCCAGTGGCT
CTGGCCAAAGTCGCAAGAGCGGCCGAATCTGGTTCGGGCCAATGGTGTAA
TCACGAATTAGTGACAATGGTAGTCTGACTCTTACGCCTCTTGCCATTTC
TTGGCAAGCGAATATGTTGTTCACCATGCATTTGAGGGTCGACATCAGAA
GCTTGGGCTTGCAGCTCCCAACTTCATAACTCAGAACTCCCCTACCATCC
ACACTGTAACCTGAGCTGCACCCTTCTCTGGATCCTCCCCAACCTGACCC
CAAAGGGTATCCTCCTGCTGGCGTCGAACGAGCAAATCCGGGCCCTTCGG
CACGCAATGCGCCCGGTGGACCGCTCGCCGTGAACGCTGTGTCCACTACC
GCGTTAAGGGGCAACTACCGCCGTGCTGAAAGCACCTCCCCCCCCGTCGG
CGAACAAGTGAGCTCGGGGTGGGCCGGCTTCGATCGAAAGTAGCAGACGC
ACAGCAGCGACGTTCGTACGCTCGGC
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protein sequence of EsuBft1973_4a-0001

>EsuBft1973_4 ID=EsuBft1973_4|Name=EsuBft1973_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=23bp
MVARQPNQKHEYLLDFRWHDKPC
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mRNA from alignment at Scaffold_347:156606..158066-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1973_4a-0001 ID=EsuBft1973_4a-0001|Name=EsuBft1973_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1461bp|location=Sequence derived from alignment at Scaffold_347:156606..158066- (Ectocarpus subulatus male Bft15b)
ATGGTTGCGAGGCAGCCGAATCAGAAGCACGAGTGATGGAATAGTTCGTG
GGGCATGACGCGCGTGGGAGATTTTGACCGGCATCTCAAACCCACCTCAC
GGTCTAGCAGCTGCCCCCGCGACAGATATCTTTTGGATTTCCGTTGGCAC
GACAAGCCCTGCTAATGCGTACGGGGGCCTTGCCGGATAATCCCCGCGGT
CTTCGATAGTGACTGGGTGGTACGTTATGCCCTCATAAACCCCGTCCTGG
CCGCGGCACCTCCCCCCTTGCGGAAAGCAGTAGTCCGCGGTCCCCGGGAA
ACTGTGCTGCGACGGTCACGTGATATTCCCCCCACGAAAAATGGCGGGAC
TGTGGCCATAATAAATAGGACGAAAACACACACACAACACACAAACACGG
GTGGCAAGAAAACAAAGAAAAAGAACATCACGACGTGAAACGTGCGTTTC
CTCCCAAAGCGTCGAAAGGAAAACTCAAGGTGCCCAGTGGCTCTGGCCAA
AGTCGCAAGAGCGGCCGAATCTGGTTCGGGCCAATGGTGTAATCACGAAT
TAGTGACAATGGTAGTCTGACTCTTGTAGTTCATGTCTTGTGAGGATATT
TTCGAGAATATTGACCACCAACAACATATTCGCCTGATTGAGAGCGAAGT
ATCTGATTGAGAGCGAGAGCCAAAAAAATTGAAATTTCGGGTCCAGACGC
CTCTTGCCATTTCTTGGCAAGTAGGGGACGGGCTATTCCAAGAAGCGGTG
CAAATTGAAGGTCTCATCAGCAGCTTCGCGAGCATATGCGTGTCATCGTC
ATCGGATGCTGCAGCGAGGAGCTAGACAAGTTGCTAGATTTGCCCAGATT
GGCTATTTCTGCTCAAACTGTTTCAGGGCGGTATCGCGTCGGGCGGTGGG
CTCTGCTGTAGCTTCTGCTCCCCGCTGTAGCTCCACAACGAGAGACTCCC
ACAGGATGACCAGGGTAGCGGCTTGAAGCTACGGGCTAGCCCTTCAATTC
AAGCTACACAGCAAGCTCCACCTCTCAGTGGTAGTCCGGCTACAGCGTAT
CGCGCAATCTCGCTCTCAATCAGATGCTACGCTCTCAATCAGGCGAATAT
GTTGTTCACCATGCATTTGAGGGTCGACATCAGAAGCTTGGGCTTGCAGC
TCCCAACTTCATAACTCAGAACTCCCCTACCATCCACACTGTAACCTGAG
CTGCACCCTTCTCTGGATCCTCCCCAACCTGACCCCAAAGGGTATCCTCC
TGCTGGCGTCGAACGAGCAAATCCGGGCCCTTCGGCACGCAATGCGCCCG
GTGGACCGCTCGCCGTGAACGCTGTGTCCACTACCGCGTTAAGGGGCAAC
TACCGCCGTGCTGAAAGCACCTCCCCCCCCGTCGGCGAACAAGTGAGCTC
GGGGTGGGCCGGCTTCGATCGAAAGTAGCAGACGCACAGCAGCGACGTTC
GTACGCTCGGC
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Coding sequence (CDS) from alignment at Scaffold_347:156606..158066-

>EsuBft1973_4a-0001 ID=EsuBft1973_4a-0001|Name=EsuBft1973_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=72bp|location=Sequence derived from alignment at Scaffold_347:156606..158066- (Ectocarpus subulatus male Bft15b)
ATGGTTGCGAGGCAGCCGAATCAGAAGCACGAATATCTTTTGGATTTCCG
TTGGCACGACAAGCCCTGCTAA
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