Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 13735.ENSPSIP00000001213 |
| ProteomeId | EsuBft1944_4 |
| Protein domains | SSF56672 |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | line-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 714 |
| Evalue | 5.77e-27 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| EC | 2.7.7.49 |
| EC | 3.1.21.4 |
| GO | 0003964 |
| GO | 0009036 |
| GO | 0032199 |
| GO | 0000737 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1944_4a-0001 ID=EsuBft1944_4a-0001|Name=EsuBft1944_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=714bp|location=Sequence derived from alignment at Scaffold_68:210236..210949- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AAGGTGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGG
GATTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCA
ACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAG
TGCGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCG
CCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCT
TCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGG
AAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATTCG
CCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAAC
TATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTA
TCCCCACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGT
TATCCGATTCAGCGAGGATGATGTTTTTCTGCGGAGCCTGGTGTGCTTGG
AGGAGGGGAAGACGGAAGCGGGGGGGGGAAAGGAGACACCCCTTGACCGA
GTACGGAGGGCAGTATGGGGGATGGACTTGTATGCCGATGATGCCGGCGT
CGTATCAAGGTCTGCAGCAGGACTGGCGAGAATGATGACCATCATCGTTG
AGGTGTTCGNNNNN back to topprotein sequence of EsuBft1944_4a-0001 >EsuBft1944_4 ID=EsuBft1944_4|Name=EsuBft1944_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=177bp
MLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAK
LIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAE
VLEVVVIRFSEDDVFLRSLVCLEEGKTEAGGGKETPLDRVRRAVWGMDLY
ADDAGVVSRSAAGLARMMTIIVEVFXX back to topmRNA from alignment at Scaffold_68:210236..210949- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1944_4a-0001 ID=EsuBft1944_4a-0001|Name=EsuBft1944_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=714bp|location=Sequence derived from alignment at Scaffold_68:210236..210949- (Ectocarpus subulatus male Bft15b)
AAGGTGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGG
GATTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCA
ACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAG
TGCGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCG
CCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCT
TCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGG
AAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATTCG
CCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAAC
TATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTA
TCCCCACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGT
TATCCGATTCAGCGAGGATGATGTTTTTCTGCGGAGCCTGGTGTGCTTGG
AGGAGGGGAAGACGGAAGCGGGGGGGGGAAAGGAGACACCCCTTGACCGA
GTACGGAGGGCAGTATGGGGGATGGACTTGTATGCCGATGATGCCGGCGT
CGTATCAAGGTCTGCAGCAGGACTGGCGAGAATGATGACCATCATCGTTG
AGGTGTTCGNNNNN back to topCoding sequence (CDS) from alignment at Scaffold_68:210236..210949- >EsuBft1944_4a-0001 ID=EsuBft1944_4a-0001|Name=EsuBft1944_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=531bp|location=Sequence derived from alignment at Scaffold_68:210236..210949- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAAT
ACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATGATTCGGTGG
ACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAG
CTGATCGAAGTCATTCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCG
CATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGC
GACAAGGATGTGTGCTATCCCCACTGCTGTTCAACATCTTCTTCGCCGAG
GTCCTCGAGGTCGTTGTTATCCGATTCAGCGAGGATGATGTTTTTCTGCG
GAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAAGCGGGGGGGGGAAAGG
AGACACCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGGACTTGTAT
GCCGATGATGCCGGCGTCGTATCAAGGTCTGCAGCAGGACTGGCGAGAAT
GATGACCATCATCGTTGAGGTGTTCGNNNNN back to top
|