Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1944_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 209 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1944_3a-0001 ID=EsuBft1944_3a-0001|Name=EsuBft1944_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2093bp|location=Sequence derived from alignment at Scaffold_68:210951..213043+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTTGCATCCTTCTACTCTCGCGGAATATCTCTTCCGTTCCACACCTT
GACGAGGATGGTATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTCATCGA
TCTTGAGCAACTCGGCAGGGAGGGAGTCATGGCCGGGTGCCTTCCAGTTC
TTGAGGCCTTTCGTTGCCCGTGCCACCTCCTCGAGTTCTGGCACATCTCC
CAACCGTTGAGTGTCACGTGTCGCTGGCCGCTGCGTCACTCGTTCGATGG
TGTCTGGGTTCAGGGTGGGGGATTTGGTGTTGAGTAGGGTGCTGAAGAAT
CTCGCCCACCGCTGGAGGATGTCGTCCCTGTTCCGGAGCAACACGCCGTT
CTCATCCGCGACGAACTGCTGTCCGCCCGCTTGTCTCCCACTGAGGAACA
CTGATCTCTTGAGGTCTTGGTACAGTCCTCGCATGTCGCGATCTTTGTAG
ATTTCTTCGAGCTCACTCACATATCCGTCCAGGTGGGCTTAAATGCCCGT
TTCGACTGCTGTAGCCACTCCCTTACACGCTGCTTTGAGAACCCTCCACG
TCGCTGAGTTCCAGTTGCCCCTCATCGCCCGGCGCGCTTCCCGACGTTTG
GTAAGGGCCTGCTCCAGCGCTGCTCGTGTCTCTGGGGTCCCACACCACTC
CTGCGTGCGGCGTCTCCGCGGTTCCTCCCCCAGGGTCGTCCGCGCTGCGT
CGAGGAGAGCATTGGTAAAGTCGGGCGCCGATTCCGCGGCGGTGGTTGTT
CGCTCGTCCAGTCGTGTGTCGAGGTTGAGGAGGAACCGATTAGTCACCGC
ACACCGTGCTGCTTCGAACTGCAATTCCCGTCGGTTGAATTGCTACTGTT
TCGGTTTAGTCCGGACTGCACGGTTGTGGGCAAGCCTGCCACCGAGGTTG
ACGGTGGCTACTACCATATTGTGGTCTGAGTCTGCTTTGACTGGGCGAAC
CGGCTGGGCGATGACGACCACGTTAGATACTCGGCCGTGATGTGCCTGCC
TTGTCAGGATGTAGTCAAGGCGCTTGCAATCGTTTCGCGACACACCGTTG
TAGGTGTGCCATATTCCGCCCTTACGTGTCTCAAAGAACGTGTTCGTGAG
AGCTAGCCTGTTTTCCGTTGCAAAGTTCAACAGTAGCATGCCATTGTCGT
TGAGCTTATCACGCCCGTACATTCCTATTACCCTTCCGTCCTCTCCGTCC
AACCTATCTCCCGTCCGCGCGTTGGCGTCCAGTAGGACATACACACATTC
TTTGGAAGGGATCCTCCGCACGAAACTGTCAAGTTTTCCCCAGAACACGC
GCTTGCTGTCGGCGGTTGAAGGTTCGGTTGGAGCATACGCGGCTACGAAG
TTGACCGCCCCACGGTGGCCTGCCAACAGAAACCTCATGGCCAAAAGGGC
GTTCGTCGATAAACTCCGTAGTGAACGTGGATGTCTGGCACAGTGACTCT
TTGACGGCTATCCCCACACCATGGACTCCACCAGTCTCCGTGCCACAGCC
GAACACCCGGAAACCCGCTGCTGCAAATTCCGTTCGACCTGCCATCCGTG
TCTCCTGCATTCCTACCACCGATACGTCTTGTCTCCCTGCCTCGTGTAGA
ACGCTGTAAGCTCGCCCGTATCCATTGGCCCCGTTTACAGCCAAAGTCCG
CACATTCCAGGTTGCTACCCCTAGAAGTTGACCCTGCTGTCTCTTTCGCG
CGGCGCGCGCTACTCTCTCAGCTAGCCTACCCGCCGCCCGACCCCTCCTT
TTCCTCCATCTTCCCCTCTTTTTACTATTTTCTTGCGAACACTCGGGCGA
ACGTGATCGTTACCCCGGTTCTTGCCTTGTTTCTCATAGAGTTGTCTTCT
TGTCTCGGAGCGGTGTGGCCCTCCATCTCTGGACTCTCTCCTTTCCCCTC
TCTGGGGCATACCCCCACGGCGTGCGGCCACTCCGCCACCCTCACCGTGC
TCTCTGCTGCTGCATAGCCCCGGTGTCCAAGCCGGGGCGTCAGGATCCAG
TCTCATTTTGCAGCTACCAAAGCTGGCGGCTCAGTAGCTACCCCGATCTC
ACGACAGCAGTAACTCCCAACCGCCGAACTCAGGATCCCCCTC back to topprotein sequence of EsuBft1944_3a-0001 >EsuBft1944_3 ID=EsuBft1944_3|Name=EsuBft1944_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=74bp
MEVSQDEGFVVIDLEQLGREGVMAGCLPVLEAFRCPCHLLEFWHISQPLS
VTCRWPLRHSFDGVWVQGGGFGVE back to topmRNA from alignment at Scaffold_68:210951..213043+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1944_3a-0001 ID=EsuBft1944_3a-0001|Name=EsuBft1944_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2093bp|location=Sequence derived from alignment at Scaffold_68:210951..213043+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCATCCTTCTACTCTCGCGGAATATCTCTTCCGTTCCACACCTT
GACGAGGATGGTATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTCATCGA
TCTTGAGCAACTCGGCAGGGAGGGAGTCATGGCCGGGTGCCTTCCAGTTC
TTGAGGCCTTTCGTTGCCCGTGCCACCTCCTCGAGTTCTGGCACATCTCC
CAACCGTTGAGTGTCACGTGTCGCTGGCCGCTGCGTCACTCGTTCGATGG
TGTCTGGGTTCAGGGTGGGGGATTTGGTGTTGAGTAGGGTGCTGAAGAAT
CTCGCCCACCGCTGGAGGATGTCGTCCCTGTTCCGGAGCAACACGCCGTT
CTCATCCGCGACGAACTGCTGTCCGCCCGCTTGTCTCCCACTGAGGAACA
CTGATCTCTTGAGGTCTTGGTACAGTCCTCGCATGTCGCGATCTTTGTAG
ATTTCTTCGAGCTCACTCACATATCCGTCCAGGTGGGCTTAAATGCCCGT
TTCGACTGCTGTAGCCACTCCCTTACACGCTGCTTTGAGAACCCTCCACG
TCGCTGAGTTCCAGTTGCCCCTCATCGCCCGGCGCGCTTCCCGACGTTTG
GTAAGGGCCTGCTCCAGCGCTGCTCGTGTCTCTGGGGTCCCACACCACTC
CTGCGTGCGGCGTCTCCGCGGTTCCTCCCCCAGGGTCGTCCGCGCTGCGT
CGAGGAGAGCATTGGTAAAGTCGGGCGCCGATTCCGCGGCGGTGGTTGTT
CGCTCGTCCAGTCGTGTGTCGAGGTTGAGGAGGAACCGATTAGTCACCGC
ACACCGTGCTGCTTCGAACTGCAATTCCCGTCGGTTGAATTGCTACTGTT
TCGGTTTAGTCCGGACTGCACGGTTGTGGGCAAGCCTGCCACCGAGGTTG
ACGGTGGCTACTACCATATTGTGGTCTGAGTCTGCTTTGACTGGGCGAAC
CGGCTGGGCGATGACGACCACGTTAGATACTCGGCCGTGATGTGCCTGCC
TTGTCAGGATGTAGTCAAGGCGCTTGCAATCGTTTCGCGACACACCGTTG
TAGGTGTGCCATATTCCGCCCTTACGTGTCTCAAAGAACGTGTTCGTGAG
AGCTAGCCTGTTTTCCGTTGCAAAGTTCAACAGTAGCATGCCATTGTCGT
TGAGCTTATCACGCCCGTACATTCCTATTACCCTTCCGTCCTCTCCGTCC
AACCTATCTCCCGTCCGCGCGTTGGCGTCCAGTAGGACATACACACATTC
TTTGGAAGGGATCCTCCGCACGAAACTGTCAAGTTTTCCCCAGAACACGC
GCTTGCTGTCGGCGGTTGAAGGTTCGGTTGGAGCATACGCGGCTACGAAG
TTGACCGCCCCACGGTGGCCTGCCAACAGAAACCTCATGGCCAAAAGGGC
GTTCGTCGATAAACTCCGTAGTGAACGTGGATGTCTGGCACAGTGACTCT
TTGACGGCTATCCCCACACCATGGACTCCACCAGTCTCCGTGCCACAGCC
GAACACCCGGAAACCCGCTGCTGCAAATTCCGTTCGACCTGCCATCCGTG
TCTCCTGCATTCCTACCACCGATACGTCTTGTCTCCCTGCCTCGTGTAGA
ACGCTGTAAGCTCGCCCGTATCCATTGGCCCCGTTTACAGCCAAAGTCCG
CACATTCCAGGTTGCTACCCCTAGAAGTTGACCCTGCTGTCTCTTTCGCG
CGGCGCGCGCTACTCTCTCAGCTAGCCTACCCGCCGCCCGACCCCTCCTT
TTCCTCCATCTTCCCCTCTTTTTACTATTTTCTTGCGAACACTCGGGCGA
ACGTGATCGTTACCCCGGTTCTTGCCTTGTTTCTCATAGAGTTGTCTTCT
TGTCTCGGAGCGGTGTGGCCCTCCATCTCTGGACTCTCTCCTTTCCCCTC
TCTGGGGCATACCCCCACGGCGTGCGGCCACTCCGCCACCCTCACCGTGC
TCTCTGCTGCTGCATAGCCCCGGTGTCCAAGCCGGGGCGTCAGGATCCAG
TCTCATTTTGCAGCTACCAAAGCTGGCGGCTCAGTAGCTACCCCGATCTC
ACGACAGCAGTAACTCCCAACCGCCGAACTCAGGATCCCCCTC back to topCoding sequence (CDS) from alignment at Scaffold_68:210951..213043+ >EsuBft1944_3a-0001 ID=EsuBft1944_3a-0001|Name=EsuBft1944_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=225bp|location=Sequence derived from alignment at Scaffold_68:210951..213043+ (Ectocarpus subulatus male Bft15b)
ATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTCATCGATCTTGAGCAACT
CGGCAGGGAGGGAGTCATGGCCGGGTGCCTTCCAGTTCTTGAGGCCTTTC
GTTGCCCGTGCCACCTCCTCGAGTTCTGGCACATCTCCCAACCGTTGAGT
GTCACGTGTCGCTGGCCGCTGCGTCACTCGTTCGATGGTGTCTGGGTTCA
GGGTGGGGGATTTGGTGTTGAGTAG back to top
|