EsuBft1944_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1944_2a-0001
Unique NameEsuBft1944_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:219089..222234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXH9
ProteomeIdEsuBft1944_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length183
Hectar predicted targeting categoryother localisation
Evalue1.5e-171
EggNOG OGs2CMAG@1|root,2QPT0@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCEP120
KEGG koko:K16459
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007097,GO:0007098,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008150,GO:0008283,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0021537,GO:0021543,GO:0021846,GO:0021987,GO:0022008,GO:0022027,GO:0022402,GO:0030154,GO:0030900,GO:0030953,GO:0031023,GO:0031122,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045724,GO:0045787,GO:0046605,GO:0046607,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051726,GO:0060322,GO:0060491,GO:0061351,GO:0065007,GO:0070507,GO:0071840,GO:0090068,GO:0097435,GO:0120032,GO:0120034,GO:0120035,GO:1902017,GO:1902115,GO:1902117
Descriptioninterkinetic nuclear migration
COG categoryS
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_2aEsuBft1944_2aEctocarpus subulatus male Bft15bgeneScaffold_68 219089..222234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_2a-0001EsuBft1944_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 219479..222234 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_2a-0001-exonagat-exon-72336Ectocarpus subulatus male Bft15bexonScaffold_68 219089..220068 -
EsuBft1944_2a-0001-exonEsuBft1944_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 220491..220857 -
EsuBft1944_2a-0001-exonagat-exon-72338Ectocarpus subulatus male Bft15bexonScaffold_68 221439..221868 -
EsuBft1944_2a-0001-exonagat-exon-72337Ectocarpus subulatus male Bft15bexonScaffold_68 222176..222234 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_2a-0001-exonagat-three_prime_utr-7221Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 219089..219478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_2a-0001-cdsEsuBft1944_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 219479..220068 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1944_2a-0001 ID=EsuBft1944_2a-0001|Name=EsuBft1944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1836bp|location=Sequence derived from alignment at Scaffold_68:219089..222234- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGGGAAGGGTAGGCTGCACCTTCACCACTATCCCGTCGGGAGCGA
CAGTACAGGGGAACAGGGGACGAAGGCAGCAGCCTGCATTGCTGTTGCTG
TTGCTGTTGTTGCTGGTGCTGCTGGTGCTGCCGGTTCGGCGGCAGCAAGA
CTTCTAACAGCAGAGGATGCTCTAGAGATCACCGTGGAAGTGCGGTCGCT
GCGACACCTCCCGCAGTCGTTTTTCAACGAGGACAAGGAGAAGGAACTAG
CGCTCAGACAGCACGGGCAACAACAGAGGCATCAGCGTGGACGGGGGAGC
GTCGACTACCGGAAGTGCTGGAGAGCGCAGGCAAACATCGCCAACGAGAC
GCGAGAGACGGGGAACTCGACATGGGGCAGGGGCGGGAGGTCCCGCCAGG
CGATGTGGCTGCGGGGCGCGGACAAGGTGTCGTGGAGCCTGCCCGAGCAA
CAGTTCAAGCAGGTCAATGCGTACACCCCTGTCTGCAAGGTACACGTGCA
CGCCACCAACCCCGACTCCCCCACAATGGACACCTCCGATTCGGTGGGCT
GGTTCATCGTCGACATGCGAGACCTCACCGGGCAGCGTCAGCAAGAACGC
TGGGTCAAGCTCCAGGGCGCTAGCCCCGCGGAGGTGCTGATATCCTCCCG
CCTGGCCATGGCGCGCGACCCGCAAGAGGACCCCTGTAGAGAAGGGCACG
AGCAACGAGGCCGACCGAACAGCGGTCACCGGGGGAATGATTCGGCGAAA
CCCTCTGCTTCGAAAGCAAGCTTCGAGGGTGGTTCTCCAACGGCCGCGTC
GGGTGCCGTTTCCCGTCGCTGCTGCAGCACCAGCAGCAGTGCTGGAAGAC
GGCGAGAGGGATACTTCCAACTCCATCTCCCCGGCGAGCCCCTGGCGGCC
CCGCAGCAGCGAGACAAGGAAGACGGCGAGGGGGGGGAGGAAGAGTCACA
GAGCCCCCCGGTTGCCTCCATCTGCGCCGAGCTGACGAGGGCTGATTCCG
AACCTGGACCCGGCGATGGGCCTGTTGGGAGCTCCGATGCCGACGGGCTG
TGGGCGGCGACGGCGGCAGCAGCGGTGGCCACGGGCAGGACCGAGGGCTC
AGCCAGCGCGAGCGGCGTGAGGACATGGTCCCGCCTTGCGGTGGCTGGGA
GGAGAGTTGGGCGGGCTGTAGCAATCACGGCGGCGCTGCAGCGGCCAGAG
CTCAGGCCGGTTGATCACCCAGGCAGCAGAGACGGTTCGGCGCTGAGCAA
CCGCGTCAATGGCGGCGGCGGTGTTCTAGTGGGAATCACCGACGCCACGG
GAGAGCTGTTTATGTCTGGAAAGGCCGGCGGTGCGGCCACGGCAACCGAT
GCAATCGCGGGAGTGGCTAACGCTAACCCTTCCGCCTCCCTCCGGGAAGG
CTTCCGAGTGGTTGGCTGCGGCGAGCGGGGGGGGGGGAGACACTGAAGAC
AGCGACTTCCTGGAGACCATCACCTGGGAGTGGGAAAGGGAGCCGCCGAA
CCCTGGGAGGAAGGGGGGGGTTGGCGGGGTCCTTGCTACCGTCCGGGTGC
TCATCGGCTCTGGAGCCCGATACGGTGACGTCACGATCGCGACGGGCGTG
GTGCCGTGGCCCTCCTCGGCCTGCGGCAGTCGGCAGCACGTCAACGTGAA
GCTCGTGTCCCTCGAAGGGAACGAGGTGGGCTCGTACCGCGTCTGCTTGT
CCTTGGCCGAAACAGGCGACGGCGACGGCAGCAACGGCCCGGCCGGGGAG
GGAGGCGAAGCCGGTGCGGCTTTCAAACAGGAGAGCGAGCAGTTGGAAGA
CGAGTAAGAGGAGGAAAGAGAAAGAAGCTTCGGCCT
back to top

protein sequence of EsuBft1944_2a-0001

>EsuBft1944_2 ID=EsuBft1944_2|Name=EsuBft1944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=481bp
MHGKGRLHLHHYPVGSDSTGEQGTKAAACIAVAVAVVAGAAGAAGSAAAR
LLTAEDALEITVEVRSLRHLPQSFFNEDKEKELALRQHGQQQRHQRGRGS
VDYRKCWRAQANIANETRETGNSTWGRGGRSRQAMWLRGADKVSWSLPEQ
QFKQVNAYTPVCKVHVHATNPDSPTMDTSDSVGWFIVDMRDLTGQRQQER
WVKLQGASPAEVLISSRLAMARDPQEDPCREGHEQRGRPNSGHRGNDSAK
PSASKASFEGGSPTAASGAVSRRCCSTSSSAGRRREGYFQLHLPGEPLAA
PQQRDKEDGEGGEEESQSPPVASICAELTRADSEPGPGDGPVGSSDADGL
WAATAAAAVATGRTEGSASASGVRTWSRLAVAGRRVGRAVAITAALQRPE
LRPVDHPGSRDGSALSNRVNGGGGVLVGITDATGELFMSGKAGGAATATD
AIAGVANANPSASLREGFRVVGCGERGGGRH
back to top

mRNA from alignment at Scaffold_68:219089..222234-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1944_2a-0001 ID=EsuBft1944_2a-0001|Name=EsuBft1944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3146bp|location=Sequence derived from alignment at Scaffold_68:219089..222234- (Ectocarpus subulatus male Bft15b)
ATGCACGGGAAGGGTAGGCTGCACCTTCACCACTATCCCGTCGGGAGCGA
CAGTACAGGGTAATGTATGCACGCCAAGAGAATCTATCTGTTTTTTCAGT
ACCCATTGGTCGGAGTTGCTTCCACCTTCAACAGAGACAGAGAAGCCTTC
AAGAGAAGAGAGAGAAAATCAAGACCGTGTGCACAGGTTAGATGGAAATG
CAAGCAGCTGTTTTTGATTGGAGTGCAGGCTTTCGTGATGTGCACTATTA
GTACGGCAGTATACCCCCCTCTTGACGAACATCCCCCGTTCTTGTTCCAA
TTCCCTTGTCGCCGAACATCTGGGTACATTTCATGTGTACGATCAATCAG
GCCCGAACAGCCGCAGGGAACAGGGGACGAAGGCAGCAGCCTGCATTGCT
GTTGCTGTTGCTGTTGTTGCTGGTGCTGCTGGTGCTGCCGGTTCGGCGGC
AGCAAGACTTCTAACAGCAGAGGATGCTCTAGAGATCACCGTGGAAGTGC
GGTCGCTGCGACACCTCCCGCAGTCGTTTTTCAACGAGGACAAGGAGAAG
GAACTAGCGCTCAGACAGCACGGGCAACAACAGAGGCATCAGCGTGGACG
GGGGAGCGTCGACTACCGGAAGTGCTGGAGAGCGCAGGCAAACATCGCCA
ACGAGACGCGAGAGACGGGGAACTCGACATGGGGCAGGGGCGGGAGGTCC
CGCCAGGCGATGTGGCTGCGGGGCGCGGACAAGGTGTCGTGGAGCCTGCC
CGAGCAACAGTTCAAGCAGGTCAATGCGTACACCCCTGTCTGCAAGGTGA
TGTGGCCTATTATGACTTGTTATTACATAGTGAAGCAAGAACAGGACAGC
AGTATAGTTAGTAGTCGCTTGAATTCGTAGAGTGGAGCAACGTTGTGCAT
ACCTGGAGCAACAGCGACGACTTTGCTGTAGTCCAATCCTGGGATGTTCT
CGCAGCAGTGAGTTCCCAGAGTTTTTCACAGCTAAACAGAGGGTGGAACG
CACATTTGGTCAGTGCTGTCGGGGGGAGCGTCGTCTGTCGCAGCCCTCGC
CGTAGCGCGAGTTTGACACCCGCACAACTTCGCGCAAGGAATTACCGCGG
ATATTTTTTTGTCACGGGCCCGCTTGGACACTGCTGCTGCTGTCCGTGTT
GTACGCCACACAACAGCATCAGCGAAGTGAACCAAGCTCAACGACCGAGA
GAGAGGCCAAAACAAACACGGACCAATCCCTTTGGGATCCAACATCCCAT
GATAATTTCTTCTTCTGCCATCGTTGGAAACACCCTGCGTTCTTGTTCTT
TCCGGCCGACAGCAACTTCCCTCGCACCTCTCGTTTGTTTCGCTCCCAAC
ATCCCCCCCAACCGCAACCGTTTCCAGGTACACGTGCACGCCACCAACCC
CGACTCCCCCACAATGGACACCTCCGATTCGGTGGGCTGGTTCATCGTCG
ACATGCGAGACCTCACCGGGCAGCGTCAGCAAGAACGCTGGGTCAAGCTC
CAGGGCGCTAGCCCCGCGGAGGTGCTGATATCCTCCCGCCTGGCCATGGC
GCGCGACCCGCAAGAGGACCCCTGTAGAGAAGGGCACGAGCAACGAGGCC
GACCGAACAGCGGTCACCGGGGGAATGATTCGGCGAAACCCTCTGCTTCG
AAAGCAAGCTTCGAGGGTGGTTCTCCAACGGCCGCGTCGGGTGCCGTTTC
CCGTCGCTGCTGCAGCACCAGCAGCAGTGCTGGAAGACGGCGAGGTTGCC
GTCCATACCGGGGTCGACAGCACTGTCTCCGAATCCGAGGAGCCTTTGGC
AGCCTCGACTGCTGTCGACGCGGTGTCCGACCTCGACGCCCTACCGGTTG
GGCCGGGCGCGGACGGGCAGGACGCCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATGT
CTCTGCTGCTACCGAGAGAGCAATGGCAAGGCCGCGGCACGTGCGAGTTC
GGCAGCACCGGGATAGAGGGATACTTCCAACTCCATCTCCCCGGCGAGCC
CCTGGCGGCCCCGCAGCAGCGAGACAAGGAAGACGGCGAGGGGGGGGAGG
AAGAGTCACAGAGCCCCCCGGTTGCCTCCATCTGCGCCGAGCTGACGAGG
GCTGATTCCGAACCTGGACCCGGCGATGGGCCTGTTGGGAGCTCCGATGC
CGACGGGCTGTGGGCGGCGACGGCGGCAGCAGCGGTGGCCACGGGCAGGA
CCGAGGGCTCAGCCAGCGCGAGCGGCGTGAGGACATGGTCCCGCCTTGCG
GTGGCTGGGAGGAGAGTTGGGCGGGCTGTAGCAATCACGGCGGCGCTGCA
GCGGCCAGAGCTCAGGCCGGTTGATCACCCAGGCAGCAGAGACGGTTCGG
CGCTGAGCAACCGCGTCAATGGCGGCGGCGGTGTTCTAGTGGGAATCACC
GACGCCACGGGAGAGCTGTTTATGTCTGGAAAGGCCGGCGGTGCGGCCAC
GGCAACCGATGCAATCGCGGGAGTGGCTAACGCTAACCCTTCCGCCTCCC
TCCGGGAAGGCTTCCGAGTGGTTGGCTGCGGCGAGCGGGGGGGGGGGAGA
CACTGAAGACAGCGACTTCCTGGAGACCATCACCTGGGAGTGGGAAAGGG
AGCCGCCGAACCCTGGGAGGAAGGGGGGGGTTGGCGGGGTCCTTGCTACC
GTCCGGGTGCTCATCGGCTCTGGAGCCCGATACGGTGACGTCACGATCGC
GACGGGCGTGGTGCCGTGGCCCTCCTCGGCCTGCGGCAGTCGGCAGCACG
TCAACGTGAAGCTCGTGTCCCTCGAAGGGAACGAGGTGGGCTCGTACCGC
GTCTGCTTGTCCTTGGCCGAAACAGGCGACGGCGACGGCAGCAACGGCCC
GGCCGGGGAGGGAGGCGAAGCCGGTGCGGCTTTCAAACAGGAGAGCGAGC
AGTTGGAAGACGAGTAAGAGGAGGAAAGAGAAAGAAGCTTCGGCCT
back to top

Coding sequence (CDS) from alignment at Scaffold_68:219089..222234-

>EsuBft1944_2a-0001 ID=EsuBft1944_2a-0001|Name=EsuBft1944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1446bp|location=Sequence derived from alignment at Scaffold_68:219089..222234- (Ectocarpus subulatus male Bft15b)
ATGCACGGGAAGGGTAGGCTGCACCTTCACCACTATCCCGTCGGGAGCGA
CAGTACAGGGGAACAGGGGACGAAGGCAGCAGCCTGCATTGCTGTTGCTG
TTGCTGTTGTTGCTGGTGCTGCTGGTGCTGCCGGTTCGGCGGCAGCAAGA
CTTCTAACAGCAGAGGATGCTCTAGAGATCACCGTGGAAGTGCGGTCGCT
GCGACACCTCCCGCAGTCGTTTTTCAACGAGGACAAGGAGAAGGAACTAG
CGCTCAGACAGCACGGGCAACAACAGAGGCATCAGCGTGGACGGGGGAGC
GTCGACTACCGGAAGTGCTGGAGAGCGCAGGCAAACATCGCCAACGAGAC
GCGAGAGACGGGGAACTCGACATGGGGCAGGGGCGGGAGGTCCCGCCAGG
CGATGTGGCTGCGGGGCGCGGACAAGGTGTCGTGGAGCCTGCCCGAGCAA
CAGTTCAAGCAGGTCAATGCGTACACCCCTGTCTGCAAGGTACACGTGCA
CGCCACCAACCCCGACTCCCCCACAATGGACACCTCCGATTCGGTGGGCT
GGTTCATCGTCGACATGCGAGACCTCACCGGGCAGCGTCAGCAAGAACGC
TGGGTCAAGCTCCAGGGCGCTAGCCCCGCGGAGGTGCTGATATCCTCCCG
CCTGGCCATGGCGCGCGACCCGCAAGAGGACCCCTGTAGAGAAGGGCACG
AGCAACGAGGCCGACCGAACAGCGGTCACCGGGGGAATGATTCGGCGAAA
CCCTCTGCTTCGAAAGCAAGCTTCGAGGGTGGTTCTCCAACGGCCGCGTC
GGGTGCCGTTTCCCGTCGCTGCTGCAGCACCAGCAGCAGTGCTGGAAGAC
GGCGAGAGGGATACTTCCAACTCCATCTCCCCGGCGAGCCCCTGGCGGCC
CCGCAGCAGCGAGACAAGGAAGACGGCGAGGGGGGGGAGGAAGAGTCACA
GAGCCCCCCGGTTGCCTCCATCTGCGCCGAGCTGACGAGGGCTGATTCCG
AACCTGGACCCGGCGATGGGCCTGTTGGGAGCTCCGATGCCGACGGGCTG
TGGGCGGCGACGGCGGCAGCAGCGGTGGCCACGGGCAGGACCGAGGGCTC
AGCCAGCGCGAGCGGCGTGAGGACATGGTCCCGCCTTGCGGTGGCTGGGA
GGAGAGTTGGGCGGGCTGTAGCAATCACGGCGGCGCTGCAGCGGCCAGAG
CTCAGGCCGGTTGATCACCCAGGCAGCAGAGACGGTTCGGCGCTGAGCAA
CCGCGTCAATGGCGGCGGCGGTGTTCTAGTGGGAATCACCGACGCCACGG
GAGAGCTGTTTATGTCTGGAAAGGCCGGCGGTGCGGCCACGGCAACCGAT
GCAATCGCGGGAGTGGCTAACGCTAACCCTTCCGCCTCCCTCCGGGAAGG
CTTCCGAGTGGTTGGCTGCGGCGAGCGGGGGGGGGGGAGACACTGA
back to top