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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXH9 |
| ProteomeId | EsuBft1944_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 183 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.5e-171 |
| EggNOG OGs | 2CMAG@1|root,2QPT0@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | CEP120 |
| KEGG ko | ko:K16459 |
| GOs | GO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007097,GO:0007098,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008150,GO:0008283,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0021537,GO:0021543,GO:0021846,GO:0021987,GO:0022008,GO:0022027,GO:0022402,GO:0030154,GO:0030900,GO:0030953,GO:0031023,GO:0031122,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045724,GO:0045787,GO:0046605,GO:0046607,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051726,GO:0060322,GO:0060491,GO:0061351,GO:0065007,GO:0070507,GO:0071840,GO:0090068,GO:0097435,GO:0120032,GO:0120034,GO:0120035,GO:1902017,GO:1902115,GO:1902117 |
| Description | interkinetic nuclear migration |
| COG category | S |
| BRITE | ko00000,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1944_2a-0001 ID=EsuBft1944_2a-0001|Name=EsuBft1944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1836bp|location=Sequence derived from alignment at Scaffold_68:219089..222234- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCACGGGAAGGGTAGGCTGCACCTTCACCACTATCCCGTCGGGAGCGA
CAGTACAGGGGAACAGGGGACGAAGGCAGCAGCCTGCATTGCTGTTGCTG
TTGCTGTTGTTGCTGGTGCTGCTGGTGCTGCCGGTTCGGCGGCAGCAAGA
CTTCTAACAGCAGAGGATGCTCTAGAGATCACCGTGGAAGTGCGGTCGCT
GCGACACCTCCCGCAGTCGTTTTTCAACGAGGACAAGGAGAAGGAACTAG
CGCTCAGACAGCACGGGCAACAACAGAGGCATCAGCGTGGACGGGGGAGC
GTCGACTACCGGAAGTGCTGGAGAGCGCAGGCAAACATCGCCAACGAGAC
GCGAGAGACGGGGAACTCGACATGGGGCAGGGGCGGGAGGTCCCGCCAGG
CGATGTGGCTGCGGGGCGCGGACAAGGTGTCGTGGAGCCTGCCCGAGCAA
CAGTTCAAGCAGGTCAATGCGTACACCCCTGTCTGCAAGGTACACGTGCA
CGCCACCAACCCCGACTCCCCCACAATGGACACCTCCGATTCGGTGGGCT
GGTTCATCGTCGACATGCGAGACCTCACCGGGCAGCGTCAGCAAGAACGC
TGGGTCAAGCTCCAGGGCGCTAGCCCCGCGGAGGTGCTGATATCCTCCCG
CCTGGCCATGGCGCGCGACCCGCAAGAGGACCCCTGTAGAGAAGGGCACG
AGCAACGAGGCCGACCGAACAGCGGTCACCGGGGGAATGATTCGGCGAAA
CCCTCTGCTTCGAAAGCAAGCTTCGAGGGTGGTTCTCCAACGGCCGCGTC
GGGTGCCGTTTCCCGTCGCTGCTGCAGCACCAGCAGCAGTGCTGGAAGAC
GGCGAGAGGGATACTTCCAACTCCATCTCCCCGGCGAGCCCCTGGCGGCC
CCGCAGCAGCGAGACAAGGAAGACGGCGAGGGGGGGGAGGAAGAGTCACA
GAGCCCCCCGGTTGCCTCCATCTGCGCCGAGCTGACGAGGGCTGATTCCG
AACCTGGACCCGGCGATGGGCCTGTTGGGAGCTCCGATGCCGACGGGCTG
TGGGCGGCGACGGCGGCAGCAGCGGTGGCCACGGGCAGGACCGAGGGCTC
AGCCAGCGCGAGCGGCGTGAGGACATGGTCCCGCCTTGCGGTGGCTGGGA
GGAGAGTTGGGCGGGCTGTAGCAATCACGGCGGCGCTGCAGCGGCCAGAG
CTCAGGCCGGTTGATCACCCAGGCAGCAGAGACGGTTCGGCGCTGAGCAA
CCGCGTCAATGGCGGCGGCGGTGTTCTAGTGGGAATCACCGACGCCACGG
GAGAGCTGTTTATGTCTGGAAAGGCCGGCGGTGCGGCCACGGCAACCGAT
GCAATCGCGGGAGTGGCTAACGCTAACCCTTCCGCCTCCCTCCGGGAAGG
CTTCCGAGTGGTTGGCTGCGGCGAGCGGGGGGGGGGGAGACACTGAAGAC
AGCGACTTCCTGGAGACCATCACCTGGGAGTGGGAAAGGGAGCCGCCGAA
CCCTGGGAGGAAGGGGGGGGTTGGCGGGGTCCTTGCTACCGTCCGGGTGC
TCATCGGCTCTGGAGCCCGATACGGTGACGTCACGATCGCGACGGGCGTG
GTGCCGTGGCCCTCCTCGGCCTGCGGCAGTCGGCAGCACGTCAACGTGAA
GCTCGTGTCCCTCGAAGGGAACGAGGTGGGCTCGTACCGCGTCTGCTTGT
CCTTGGCCGAAACAGGCGACGGCGACGGCAGCAACGGCCCGGCCGGGGAG
GGAGGCGAAGCCGGTGCGGCTTTCAAACAGGAGAGCGAGCAGTTGGAAGA
CGAGTAAGAGGAGGAAAGAGAAAGAAGCTTCGGCCT back to topprotein sequence of EsuBft1944_2a-0001 >EsuBft1944_2 ID=EsuBft1944_2|Name=EsuBft1944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=481bp
MHGKGRLHLHHYPVGSDSTGEQGTKAAACIAVAVAVVAGAAGAAGSAAAR
LLTAEDALEITVEVRSLRHLPQSFFNEDKEKELALRQHGQQQRHQRGRGS
VDYRKCWRAQANIANETRETGNSTWGRGGRSRQAMWLRGADKVSWSLPEQ
QFKQVNAYTPVCKVHVHATNPDSPTMDTSDSVGWFIVDMRDLTGQRQQER
WVKLQGASPAEVLISSRLAMARDPQEDPCREGHEQRGRPNSGHRGNDSAK
PSASKASFEGGSPTAASGAVSRRCCSTSSSAGRRREGYFQLHLPGEPLAA
PQQRDKEDGEGGEEESQSPPVASICAELTRADSEPGPGDGPVGSSDADGL
WAATAAAAVATGRTEGSASASGVRTWSRLAVAGRRVGRAVAITAALQRPE
LRPVDHPGSRDGSALSNRVNGGGGVLVGITDATGELFMSGKAGGAATATD
AIAGVANANPSASLREGFRVVGCGERGGGRH back to topmRNA from alignment at Scaffold_68:219089..222234- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1944_2a-0001 ID=EsuBft1944_2a-0001|Name=EsuBft1944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3146bp|location=Sequence derived from alignment at Scaffold_68:219089..222234- (Ectocarpus subulatus male Bft15b)
ATGCACGGGAAGGGTAGGCTGCACCTTCACCACTATCCCGTCGGGAGCGA
CAGTACAGGGTAATGTATGCACGCCAAGAGAATCTATCTGTTTTTTCAGT
ACCCATTGGTCGGAGTTGCTTCCACCTTCAACAGAGACAGAGAAGCCTTC
AAGAGAAGAGAGAGAAAATCAAGACCGTGTGCACAGGTTAGATGGAAATG
CAAGCAGCTGTTTTTGATTGGAGTGCAGGCTTTCGTGATGTGCACTATTA
GTACGGCAGTATACCCCCCTCTTGACGAACATCCCCCGTTCTTGTTCCAA
TTCCCTTGTCGCCGAACATCTGGGTACATTTCATGTGTACGATCAATCAG
GCCCGAACAGCCGCAGGGAACAGGGGACGAAGGCAGCAGCCTGCATTGCT
GTTGCTGTTGCTGTTGTTGCTGGTGCTGCTGGTGCTGCCGGTTCGGCGGC
AGCAAGACTTCTAACAGCAGAGGATGCTCTAGAGATCACCGTGGAAGTGC
GGTCGCTGCGACACCTCCCGCAGTCGTTTTTCAACGAGGACAAGGAGAAG
GAACTAGCGCTCAGACAGCACGGGCAACAACAGAGGCATCAGCGTGGACG
GGGGAGCGTCGACTACCGGAAGTGCTGGAGAGCGCAGGCAAACATCGCCA
ACGAGACGCGAGAGACGGGGAACTCGACATGGGGCAGGGGCGGGAGGTCC
CGCCAGGCGATGTGGCTGCGGGGCGCGGACAAGGTGTCGTGGAGCCTGCC
CGAGCAACAGTTCAAGCAGGTCAATGCGTACACCCCTGTCTGCAAGGTGA
TGTGGCCTATTATGACTTGTTATTACATAGTGAAGCAAGAACAGGACAGC
AGTATAGTTAGTAGTCGCTTGAATTCGTAGAGTGGAGCAACGTTGTGCAT
ACCTGGAGCAACAGCGACGACTTTGCTGTAGTCCAATCCTGGGATGTTCT
CGCAGCAGTGAGTTCCCAGAGTTTTTCACAGCTAAACAGAGGGTGGAACG
CACATTTGGTCAGTGCTGTCGGGGGGAGCGTCGTCTGTCGCAGCCCTCGC
CGTAGCGCGAGTTTGACACCCGCACAACTTCGCGCAAGGAATTACCGCGG
ATATTTTTTTGTCACGGGCCCGCTTGGACACTGCTGCTGCTGTCCGTGTT
GTACGCCACACAACAGCATCAGCGAAGTGAACCAAGCTCAACGACCGAGA
GAGAGGCCAAAACAAACACGGACCAATCCCTTTGGGATCCAACATCCCAT
GATAATTTCTTCTTCTGCCATCGTTGGAAACACCCTGCGTTCTTGTTCTT
TCCGGCCGACAGCAACTTCCCTCGCACCTCTCGTTTGTTTCGCTCCCAAC
ATCCCCCCCAACCGCAACCGTTTCCAGGTACACGTGCACGCCACCAACCC
CGACTCCCCCACAATGGACACCTCCGATTCGGTGGGCTGGTTCATCGTCG
ACATGCGAGACCTCACCGGGCAGCGTCAGCAAGAACGCTGGGTCAAGCTC
CAGGGCGCTAGCCCCGCGGAGGTGCTGATATCCTCCCGCCTGGCCATGGC
GCGCGACCCGCAAGAGGACCCCTGTAGAGAAGGGCACGAGCAACGAGGCC
GACCGAACAGCGGTCACCGGGGGAATGATTCGGCGAAACCCTCTGCTTCG
AAAGCAAGCTTCGAGGGTGGTTCTCCAACGGCCGCGTCGGGTGCCGTTTC
CCGTCGCTGCTGCAGCACCAGCAGCAGTGCTGGAAGACGGCGAGGTTGCC
GTCCATACCGGGGTCGACAGCACTGTCTCCGAATCCGAGGAGCCTTTGGC
AGCCTCGACTGCTGTCGACGCGGTGTCCGACCTCGACGCCCTACCGGTTG
GGCCGGGCGCGGACGGGCAGGACGCCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATGT
CTCTGCTGCTACCGAGAGAGCAATGGCAAGGCCGCGGCACGTGCGAGTTC
GGCAGCACCGGGATAGAGGGATACTTCCAACTCCATCTCCCCGGCGAGCC
CCTGGCGGCCCCGCAGCAGCGAGACAAGGAAGACGGCGAGGGGGGGGAGG
AAGAGTCACAGAGCCCCCCGGTTGCCTCCATCTGCGCCGAGCTGACGAGG
GCTGATTCCGAACCTGGACCCGGCGATGGGCCTGTTGGGAGCTCCGATGC
CGACGGGCTGTGGGCGGCGACGGCGGCAGCAGCGGTGGCCACGGGCAGGA
CCGAGGGCTCAGCCAGCGCGAGCGGCGTGAGGACATGGTCCCGCCTTGCG
GTGGCTGGGAGGAGAGTTGGGCGGGCTGTAGCAATCACGGCGGCGCTGCA
GCGGCCAGAGCTCAGGCCGGTTGATCACCCAGGCAGCAGAGACGGTTCGG
CGCTGAGCAACCGCGTCAATGGCGGCGGCGGTGTTCTAGTGGGAATCACC
GACGCCACGGGAGAGCTGTTTATGTCTGGAAAGGCCGGCGGTGCGGCCAC
GGCAACCGATGCAATCGCGGGAGTGGCTAACGCTAACCCTTCCGCCTCCC
TCCGGGAAGGCTTCCGAGTGGTTGGCTGCGGCGAGCGGGGGGGGGGGAGA
CACTGAAGACAGCGACTTCCTGGAGACCATCACCTGGGAGTGGGAAAGGG
AGCCGCCGAACCCTGGGAGGAAGGGGGGGGTTGGCGGGGTCCTTGCTACC
GTCCGGGTGCTCATCGGCTCTGGAGCCCGATACGGTGACGTCACGATCGC
GACGGGCGTGGTGCCGTGGCCCTCCTCGGCCTGCGGCAGTCGGCAGCACG
TCAACGTGAAGCTCGTGTCCCTCGAAGGGAACGAGGTGGGCTCGTACCGC
GTCTGCTTGTCCTTGGCCGAAACAGGCGACGGCGACGGCAGCAACGGCCC
GGCCGGGGAGGGAGGCGAAGCCGGTGCGGCTTTCAAACAGGAGAGCGAGC
AGTTGGAAGACGAGTAAGAGGAGGAAAGAGAAAGAAGCTTCGGCCT back to topCoding sequence (CDS) from alignment at Scaffold_68:219089..222234- >EsuBft1944_2a-0001 ID=EsuBft1944_2a-0001|Name=EsuBft1944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1446bp|location=Sequence derived from alignment at Scaffold_68:219089..222234- (Ectocarpus subulatus male Bft15b)
ATGCACGGGAAGGGTAGGCTGCACCTTCACCACTATCCCGTCGGGAGCGA
CAGTACAGGGGAACAGGGGACGAAGGCAGCAGCCTGCATTGCTGTTGCTG
TTGCTGTTGTTGCTGGTGCTGCTGGTGCTGCCGGTTCGGCGGCAGCAAGA
CTTCTAACAGCAGAGGATGCTCTAGAGATCACCGTGGAAGTGCGGTCGCT
GCGACACCTCCCGCAGTCGTTTTTCAACGAGGACAAGGAGAAGGAACTAG
CGCTCAGACAGCACGGGCAACAACAGAGGCATCAGCGTGGACGGGGGAGC
GTCGACTACCGGAAGTGCTGGAGAGCGCAGGCAAACATCGCCAACGAGAC
GCGAGAGACGGGGAACTCGACATGGGGCAGGGGCGGGAGGTCCCGCCAGG
CGATGTGGCTGCGGGGCGCGGACAAGGTGTCGTGGAGCCTGCCCGAGCAA
CAGTTCAAGCAGGTCAATGCGTACACCCCTGTCTGCAAGGTACACGTGCA
CGCCACCAACCCCGACTCCCCCACAATGGACACCTCCGATTCGGTGGGCT
GGTTCATCGTCGACATGCGAGACCTCACCGGGCAGCGTCAGCAAGAACGC
TGGGTCAAGCTCCAGGGCGCTAGCCCCGCGGAGGTGCTGATATCCTCCCG
CCTGGCCATGGCGCGCGACCCGCAAGAGGACCCCTGTAGAGAAGGGCACG
AGCAACGAGGCCGACCGAACAGCGGTCACCGGGGGAATGATTCGGCGAAA
CCCTCTGCTTCGAAAGCAAGCTTCGAGGGTGGTTCTCCAACGGCCGCGTC
GGGTGCCGTTTCCCGTCGCTGCTGCAGCACCAGCAGCAGTGCTGGAAGAC
GGCGAGAGGGATACTTCCAACTCCATCTCCCCGGCGAGCCCCTGGCGGCC
CCGCAGCAGCGAGACAAGGAAGACGGCGAGGGGGGGGAGGAAGAGTCACA
GAGCCCCCCGGTTGCCTCCATCTGCGCCGAGCTGACGAGGGCTGATTCCG
AACCTGGACCCGGCGATGGGCCTGTTGGGAGCTCCGATGCCGACGGGCTG
TGGGCGGCGACGGCGGCAGCAGCGGTGGCCACGGGCAGGACCGAGGGCTC
AGCCAGCGCGAGCGGCGTGAGGACATGGTCCCGCCTTGCGGTGGCTGGGA
GGAGAGTTGGGCGGGCTGTAGCAATCACGGCGGCGCTGCAGCGGCCAGAG
CTCAGGCCGGTTGATCACCCAGGCAGCAGAGACGGTTCGGCGCTGAGCAA
CCGCGTCAATGGCGGCGGCGGTGTTCTAGTGGGAATCACCGACGCCACGG
GAGAGCTGTTTATGTCTGGAAAGGCCGGCGGTGCGGCCACGGCAACCGAT
GCAATCGCGGGAGTGGCTAACGCTAACCCTTCCGCCTCCCTCCGGGAAGG
CTTCCGAGTGGTTGGCTGCGGCGAGCGGGGGGGGGGGAGACACTGA back to top
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