EsuBft1938_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1938_4a-0001
Unique NameEsuBft1938_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:53678..56599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7029.ACYPI088512-PA
ProteomeIdEsuBft1938_4
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl33208|Metazoa
Length2175
Evalue3.88e-48
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0097159
GO1901363
GO0044424
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1938_4aEsuBft1938_4aEctocarpus subulatus male Bft15bgeneScaffold_106 53678..56599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1938_4a-0001EsuBft1938_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 53678..56569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1938_4a-0001-exonagat-exon-48895Ectocarpus subulatus male Bft15bexonScaffold_106 53678..53915 -
EsuBft1938_4a-0001-exonagat-exon-48894Ectocarpus subulatus male Bft15bexonScaffold_106 53968..54737 -
EsuBft1938_4a-0001-exonagat-exon-48896Ectocarpus subulatus male Bft15bexonScaffold_106 55078..55399 -
EsuBft1938_4a-0001-exonEsuBft1938_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 55538..56286 -
EsuBft1938_4a-0001-exonagat-exon-48893Ectocarpus subulatus male Bft15bexonScaffold_106 56504..56599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1938_4a-0001-cdsEsuBft1938_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 53678..53915 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1938_4a-0001-exonagat-five_prime_utr-4687Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 56570..56599 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1938_4a-0001 ID=EsuBft1938_4a-0001|Name=EsuBft1938_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2175bp|location=Sequence derived from alignment at Scaffold_106:53678..56599- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCAACCCAGAGAAGAAGTCGCCGTACGAGATGTGGCACGGGCACCCTCG
CCAGCCGGGGGCGACGTACCCGTTCCTCAAACCTGCCGTATACAAGGCGA
TCACAGCTCGCAACTTCACCTGGCAATCCGTACCCGCTGCCCCCACCGCC
CTGCCCCAGTCGCCGCCTCCCATCGCAGAGGAGGAAGAGGAATTCGCGAC
TGGGGAGGACGAGGTTGGGGAGGGCGCGTCCCCGTTCCTCAAACCTGCCG
TATACAAGGTCAAGCGCACGCACAAGTCCGAGCCGAAAGCCCAAAAGTGT
TCTTGCCTCGGCCCGGGAATCAACACCAACCGTGATTGCGTGCGCATCTT
GAACGAAAAACGCCAAGCGATCACAGCTCTCACCTGGCAATCCGTACCCG
CTGCCCCCACCGCCCTGCCCCGGTCGCTGCCTCCCATCGCAGAGGAGGAA
GAGGAATTCGCGACTGGGGAGGACGAGGTTGGGGAGGGCGCGTCGAGCCA
AGGTGGAGGGAGGGCGGAGGGAGAACCCGTGGATGGAGGACCAGGTTTCA
ANACCCCCTCGAGCAGTGAGGGCGCGAGCGTCGCTCCATCTGCCACGTCG
GCCAGCATGGCCGATGTGGGCGGCGGCGAGGACGACCGTCGCAACAGCAG
CCGCCGCTGTAGCGGCGGCAGCGGCAGCGGCAGCAACAGTGGCAGCACCA
GCGGCAGCGGCAGCGACAGCGACAGCGACAGCGAGATGGATCTCCCAGCG
CTCCGCGGGCCAGAGGCCTGGCGGCTCGCCCGCTTCGACAAGCCGGCGGG
ACTCACCAGCCGCCGCATCAGGGAGAACCCTCGCCGACATCCGAGGGCGG
TGCGAGAGTTGCTGTTCGAGCGCGCGGAGGAGGCCCACCCTGTGCGCCAA
GAGGCGGAGGACTTCCTGCTGGGTGCGGTGGGCCTCATGCTCAACTCGCC
AGACGCCTTCGAGACGGCTCTGGCGTCCCTCGAGCTAAGTGAATTCCCCA
TTGGCAAGCGTCCGAGTGATGTAGAACCCCCCGCCATGACCGTAGCCGGC
GTTGTTAAGTCTGTGTACAGAGAGGGGTGGGAACAGGCCATGAGGGAAGA
GTGTGAATGGCACTTGGGCACGGGGACATTTTCATTCATAGACGGCGCGC
CAGAGGGGCACAGGCCTTGGGGGTACCACGCTGCTGAGACGCTAGTCGAG
AACGGGTTCGAGCAGTGCGAGGCGGACCCGTGTATTTTCCGCAAGATGGT
AGATGAAGTCGTGGTGATGATTCTCGTGATCTACGTGGATGACATTTTGG
TGGCTGGGTCTGACGAGGATTGCGAGGAGTTGCTTCCTTCTCTTCAACAA
GAAATTTCCCACCAAAAACTTGGAGAATGCGAATGGTTTGACGGGTGCGC
CACTGAGAGAGATGTAGAGGCTGGGACTCTTAGAATCTCCCAAACCGCGT
ACATTGATAGCATGGTGAAACGCTTTGATGTACAATCGACCTCCCGCATC
CCTGCTTCCCCTAGTGTCGACCTAGGACCGGAGCGAGACGACGAGAAGGG
TGGGAAGTGCCCGGTGAGGGAGGCCATCGGCAGCATGATGTGTGTGTCGA
CGTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGTGCCAT
GCCCACGCCCCGGCGAAGAGGCACTGGGATGCCATCCAGAAGATCCTCGG
CTACTTGAAGGAGACGAGGGACGTCGGCATCACCTACAAACGAGGATCGG
GGTTAGAGCTGGCCGTGTACGTAGACGCTAGCTACGCTGACACGGAGAAT
AGGCGTTCGGTGTCAGGGTTGGCGACGATGGTTGGAGGTACCGTAGTCAG
CCATGGTAGCAAGACAAAGAGCATCGTGTCTTTGTCTTCGACGGAAGCCA
AATACATAGCTGCCGGGGAGGGCGTCAAGGAGGCGTTCATCCAGGTCCTT
GAGGACAACCAGGGGGGCATAGAGTTGGTGCAGAACCCCCTCAGCTCAGG
TCGCACGAAACACATCGACGTGAGATTTCATTTCATCCGCGGATTGTTTA
GGTCGGGGGATATTTCGGTCAAGTTTGTTCCGACAACGGAGCAACACGCG
GACCTCCTAACCAAGGCCCGTAGCAGGGATAGTCTGCAGTACCACCGGCG
CAAGTTGATGAATTTGCCGGTGTAG
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protein sequence of EsuBft1938_4a-0001

>EsuBft1938_4 ID=EsuBft1938_4|Name=EsuBft1938_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=714bp
MWHGHPRQPGATYPFLKPAVYKAITARNFTWQSVPAAPTALPQSPPPIAE
EEEEFATGEDEVGEGASPFLKPAVYKVKRTHKSEPKAQKCSCLGPGINTN
RDCVRILNEKRQAITALTWQSVPAAPTALPRSLPPIAEEEEEFATGEDEV
GEGASSQGGGRAEGEPVDGGPGFXTPSSSEGASVAPSATSASMADVGGGE
DDRRNSSRRCSGGSGSGSNSGSTSGSGSDSDSDSEMDLPALRGPEAWRLA
RFDKPAGLTSRRIRENPRRHPRAVRELLFERAEEAHPVRQEAEDFLLGAV
GLMLNSPDAFETALASLELSEFPIGKRPSDVEPPAMTVAGVVKSVYREGW
EQAMREECEWHLGTGTFSFIDGAPEGHRPWGYHAAETLVENGFEQCEADP
CIFRKMVDEVVVMILVIYVDDILVAGSDEDCEELLPSLQQEISHQKLGEC
EWFDGCATERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPASPSVDLGP
ERDDEKGGKCPVREAIGSMMCVSTFSRPDVSFAVRAVACHAHAPAKRHWD
AIQKILGYLKETRDVGITYKRGSGLELAVYVDASYADTENRRSVSGLATM
VGGTVVSHGSKTKSIVSLSSTEAKYIAAGEGVKEAFIQVLEDNQGGIELV
QNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKARSRD
SLQYHRRKLMNLPV
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mRNA from alignment at Scaffold_106:53678..56599-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1938_4a-0001 ID=EsuBft1938_4a-0001|Name=EsuBft1938_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2922bp|location=Sequence derived from alignment at Scaffold_106:53678..56599- (Ectocarpus subulatus male Bft15b)
TCCAACCCAGAGAAGAAGTCGCCGTACGAGATGTGGCACGGGCACCCTCG
CCAGCCGGGGGCGACGTACCCGTTCCTCAAACCTGCCGTATACAAGGTCA
AGCGCACGCACAAGTCCGAGCCGAAAGCCCAAAAGTGTTCTTGCCTCGGC
CCGGGAATCAACACCAACCGTGATTGCGTGCGCATCTTGAACGAAAAACG
CCAAGCGATCACAGCTCTCACCTGGCAATCCGTACCCGCTGCCCCNATTT
TGCCTCGGCCCGGGAACGAACACCAACCGTGATTGCGTGCGCATCTTGAA
CGAAAAACGCCAGGCGATCACAGCTCGCAACTTCACCTGGCAATCCGTAC
CCGCTGCCCCCACCGCCCTGCCCCAGTCGCCGCCTCCCATCGCAGAGGAG
GAAGAGGAATTCGCGACTGGGGAGGACGAGGTTGGGGAGGGCGCGTCCCC
GTTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACGCACAAGTCCGAGC
CGAAAGCCCAAAAGTGTTCTTGCCTCGGCCCGGGAATCAACACCAACCGT
GATTGCGTGCGCATCTTGAACGAAAAACGCCAAGCGATCACAGCTCTCAC
CTGGCAATCCGTACCCGCTGCCCCCACCGCCCTGCCCCGGTCGCTGCCTC
CCATCGCAGAGGAGGAAGAGGAATTCGCGACTGGGGAGGACGAGGTTGGG
GAGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGAGGGAGAACCCGTGGA
TGGAGGACCAGGTTTCAANACCCCCTCGAGCAGTGAGGGCGCGAGCGTCG
CTCCATCTGCCACGTCGGCCAGCATGGCCGATGTGGGCGGCGGCGAGGAC
GACCGTCGCAACAGCAGCCGCCGCTGTAGCGGCGGCAGCGGCAGCGGCAG
CAACAGTGGCAGCACCAGCGGCAGCGGCAGCGACAGCGACAGCGACAGCG
AGATGGATCTCCCAGCGCTCCGCGGGCCAGAGGCCTGGCGGCTCGCCCGC
TTCGACAAGCCGGCGGGACTCACCAGCCGCCGCATCAGGGAGAACCCTCG
CCGACATCCGAGGTACGAGTCGTCCCCGTCGCCGACAAGTGCCGAAGCCC
TGCTCGCTTCGGCGGCGAGCCTGCCCGTCAGCAGCACGGAGGAGTTCACC
AGCTGAATGCTCTCGGCGGTACTTCACGTGGCGGAAGGGCTAGAGGCAAG
GGCGGTGCGAGAGTTGCTGTTCGAGCGCGCGGAGGAGGCCCACCCTGTGC
GCCAAGAGGCGGAGGACTTCCTGCTGGGTGCGGTGGGCCTCATGCTCAAC
TCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCCTCGAGCTAAGTGAATT
CCCCATTGGCAAGCGTCCGAGTGATGTAGAACCCCCCGCCATGACCGTAG
CCGGCGTTGTTAAGTCTGTGTACAGAGAGGGGTGGGAACAGGCCATGAGG
GAAGAGTGTGAATGGCACTTGGGCACGGGGACATTTTCATTCATAGACGG
CGCGCCAGAGGGGCACAGGCCTGTGAGCTCAAAGTGGTGTTTTTGTTGGA
ACACCAACAAGGAAGGGGAGATAGAAAAGTTCAAAGCGCGTCTGGTTGCT
AGGGAGTCTTCGCAAATCCCGAACGTCGATTGTTTCCATCCGTCTTCCCC
TTGCCCATCATCCGCATCCATTAAACTGATGCTTGCGGTAGCAAACGAGA
AGGGCATGAACCTCAAATCACTGGGATGTGAAGCAGGCGTACACACAAGC
CACGCTAGACGAGGAGGTTTTTCTGAGGCTCCCCTCTGGGTGCAGGGACA
AATCGCATAAGATTCTTAAGGCCGAGCGTTCGATTTACGGTCTGAAGCGG
AGCGGTAGGTAGTGGGGGTACCACGCTGCTGAGACGCTAGTCGAGAACGG
GTTCGAGCAGTGCGAGGCGGACCCGTGTATTTTCCGCAAGATGGTAGATG
AAGTCGTGGTGATGATTCTCGTGATCTACGTGGATGACATTTTGGTGGCT
GGGTCTGACGAGGATTGCGAGGAGTTGCTTCCTTCTCTTCAACAAGAAAT
TTCCCACCAAAAACTTGGAGAATGCGAATGGTTTGACGGGTGCGCCACTG
AGAGAGATGTAGAGGCTGGGACTCTTAGAATCTCCCAAACCGCGTACATT
GATAGCATGGTGAAACGCTTTGATGTACAATCGACCTCCCGCATCCCTGC
TTCCCCTAGTGTCGACCTAGGACCGGAGCGAGACGACGAGAAGGGTGGGA
AGTGCCCGGTGAGGGAGGCCATCGGCAGCATGATGTGTGTGTCGACGTTC
TCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGTGCCATGCCCA
CGCCCCGGCGAAGAGGCACTGGGATGCCATCCAGAAGATCCTCGGCTACT
TGAAGGAGACGAGGGACGTCGGCATCACCTACAAACGAGGATCGGGGTTA
GAGCTGGCCGTGTACGTAGACGCTAGCTACGCTGACACGGAGAATAGGCG
TTCGGTGTCAGGGTTGGCGACGATGGTTGGAGGTACCGTAGTCAGCCATG
GTAGCAAGACAAAGAGCATCGTGTCTTTGTCTTCGACGGAAGCCAAATAC
ATAGCTGCCGGGGAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCT
TTCGTTTTGTTGCCCCAGAGACCAGTGGTAGCAGCATCCAGGTCCTTGAG
GACAACCAGGGGGGCATAGAGTTGGTGCAGAACCCCCTCAGCTCAGGTCG
CACGAAACACATCGACGTGAGATTTCATTTCATCCGCGGATTGTTTAGGT
CGGGGGATATTTCGGTCAAGTTTGTTCCGACAACGGAGCAACACGCGGAC
CTCCTAACCAAGGCCCGTAGCAGGGATAGTCTGCAGTACCACCGGCGCAA
GTTGATGAATTTGCCGGTGTAG
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Coding sequence (CDS) from alignment at Scaffold_106:53678..56599-

>EsuBft1938_4a-0001 ID=EsuBft1938_4a-0001|Name=EsuBft1938_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2145bp|location=Sequence derived from alignment at Scaffold_106:53678..56599- (Ectocarpus subulatus male Bft15b)
ATGTGGCACGGGCACCCTCGCCAGCCGGGGGCGACGTACCCGTTCCTCAA
ACCTGCCGTATACAAGGCGATCACAGCTCGCAACTTCACCTGGCAATCCG
TACCCGCTGCCCCCACCGCCCTGCCCCAGTCGCCGCCTCCCATCGCAGAG
GAGGAAGAGGAATTCGCGACTGGGGAGGACGAGGTTGGGGAGGGCGCGTC
CCCGTTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACGCACAAGTCCG
AGCCGAAAGCCCAAAAGTGTTCTTGCCTCGGCCCGGGAATCAACACCAAC
CGTGATTGCGTGCGCATCTTGAACGAAAAACGCCAAGCGATCACAGCTCT
CACCTGGCAATCCGTACCCGCTGCCCCCACCGCCCTGCCCCGGTCGCTGC
CTCCCATCGCAGAGGAGGAAGAGGAATTCGCGACTGGGGAGGACGAGGTT
GGGGAGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGAGGGAGAACCCGT
GGATGGAGGACCAGGTTTCAANACCCCCTCGAGCAGTGAGGGCGCGAGCG
TCGCTCCATCTGCCACGTCGGCCAGCATGGCCGATGTGGGCGGCGGCGAG
GACGACCGTCGCAACAGCAGCCGCCGCTGTAGCGGCGGCAGCGGCAGCGG
CAGCAACAGTGGCAGCACCAGCGGCAGCGGCAGCGACAGCGACAGCGACA
GCGAGATGGATCTCCCAGCGCTCCGCGGGCCAGAGGCCTGGCGGCTCGCC
CGCTTCGACAAGCCGGCGGGACTCACCAGCCGCCGCATCAGGGAGAACCC
TCGCCGACATCCGAGGGCGGTGCGAGAGTTGCTGTTCGAGCGCGCGGAGG
AGGCCCACCCTGTGCGCCAAGAGGCGGAGGACTTCCTGCTGGGTGCGGTG
GGCCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCCT
CGAGCTAAGTGAATTCCCCATTGGCAAGCGTCCGAGTGATGTAGAACCCC
CCGCCATGACCGTAGCCGGCGTTGTTAAGTCTGTGTACAGAGAGGGGTGG
GAACAGGCCATGAGGGAAGAGTGTGAATGGCACTTGGGCACGGGGACATT
TTCATTCATAGACGGCGCGCCAGAGGGGCACAGGCCTTGGGGGTACCACG
CTGCTGAGACGCTAGTCGAGAACGGGTTCGAGCAGTGCGAGGCGGACCCG
TGTATTTTCCGCAAGATGGTAGATGAAGTCGTGGTGATGATTCTCGTGAT
CTACGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGAGGAGT
TGCTTCCTTCTCTTCAACAAGAAATTTCCCACCAAAAACTTGGAGAATGC
GAATGGTTTGACGGGTGCGCCACTGAGAGAGATGTAGAGGCTGGGACTCT
TAGAATCTCCCAAACCGCGTACATTGATAGCATGGTGAAACGCTTTGATG
TACAATCGACCTCCCGCATCCCTGCTTCCCCTAGTGTCGACCTAGGACCG
GAGCGAGACGACGAGAAGGGTGGGAAGTGCCCGGTGAGGGAGGCCATCGG
CAGCATGATGTGTGTGTCGACGTTCTCGCGTCCAGACGTCTCGTTCGCCG
TGCGTGCGGTAGCGTGCCATGCCCACGCCCCGGCGAAGAGGCACTGGGAT
GCCATCCAGAAGATCCTCGGCTACTTGAAGGAGACGAGGGACGTCGGCAT
CACCTACAAACGAGGATCGGGGTTAGAGCTGGCCGTGTACGTAGACGCTA
GCTACGCTGACACGGAGAATAGGCGTTCGGTGTCAGGGTTGGCGACGATG
GTTGGAGGTACCGTAGTCAGCCATGGTAGCAAGACAAAGAGCATCGTGTC
TTTGTCTTCGACGGAAGCCAAATACATAGCTGCCGGGGAGGGCGTCAAGG
AGGCGTTCATCCAGGTCCTTGAGGACAACCAGGGGGGCATAGAGTTGGTG
CAGAACCCCCTCAGCTCAGGTCGCACGAAACACATCGACGTGAGATTTCA
TTTCATCCGCGGATTGTTTAGGTCGGGGGATATTTCGGTCAAGTTTGTTC
CGACAACGGAGCAACACGCGGACCTCCTAACCAAGGCCCGTAGCAGGGAT
AGTCTGCAGTACCACCGGCGCAAGTTGATGAATTTGCCGGTGTAG
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