Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FIA9 |
| ProteomeId | EsuBft1938_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 110 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.99e-12 |
| EggNOG OGs | 2D5KK@1|root,2SYVY@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1938_3a-0001 ID=EsuBft1938_3a-0001|Name=EsuBft1938_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1107bp|location=Sequence derived from alignment at Scaffold_106:62212..63601+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGGAAGAAGTCCTCCGTCGAGGTGAGATCCTGTACTGGCAGGACGT
CGCCGAGTGGGTAACAGCGGAACGCGCGAAGGTTGACATGGAGGAGTTAC
AAGGGAGATACCCAAGAAAAATCGTCCGGGCCTTGTTTTCAAGCATCGAG
GAGTCCGGGACTTCACGCTTGGTCAGTCAAGAGCCAGCACAAGGAGACGC
ACGCGAGCGGGAACTCTTCCTCTTCCCAAAAACCCTTGGGGACGAGCATC
TCGTTGACTTAATGCTGCGTGCTCGCCGTAATGCACCCGTACAGCCACCA
CCCAGCCAGCTAGCGGAAAAGGGCGGGTCTCTCAAGTCGATCCTGGAGCA
AGTCGACAAGGACAAGGAGGACGCAGACGCAAGGATGTCCGTCGTGCGGG
CAGCTGGTAGAATTGTTCGAGCCGACGTGGCGAGTGAGCCTGCCCTGAAG
AACACCCCCGGGACACGCGAGAAGCATCGCTACGCCGATGAGTTGGACAT
GAAAGTAAAGCAACCCAGAGAGACTCTGCTATCTGCGTTTCCTCCGGCCT
TGGTTGGGTTATACCAAAGCATGACGGACATGGCACTGTATCGCGAGATC
ATCGCATCGGAGACCGAACATCCTCGAAAGCCCTGGGTATGGGAGACCGC
AGGGCGAGACGGACGGCACCCTACCACCTCGGGCGACTCGGAGGGCGAGG
ACGGTGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGAAGTGACAGTG
TCGTTAGGGCCACGAACCGAGGAACAGGCCAGGCATATCGACAGCCTTAA
CCGCGGTAGGCGATCTACGCATCGTAGGCTTCTATTGATGTGTACGGTGG
TGGTGAAGGCAATTTTGTGTGGTCGGCACATGGGTTCGCACAACATCAAA
GGGGCTCAGTGGGCAAAGTCTAGGGGAGCCGGGGATCTCTTACGGTGGAG
GACGTCATTCTGGGGCCGGAGCGGGACCGGGAGGACGGAGCACGGCGGTA
TAACGAGTTTCCGGCGGAACTCTACCGCGGCGTATTCACTGAGGCGCGGA
ACAACTCCGACAGGTCTGCGGCAGACACATGCGTCGAGTCTGAACTCCGC
AAGGTAA back to topprotein sequence of EsuBft1938_3a-0001 >EsuBft1938_3 ID=EsuBft1938_3|Name=EsuBft1938_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=368bp
MVEEVLRRGEILYWQDVAEWVTAERAKVDMEELQGRYPRKIVRALFSSIE
ESGTSRLVSQEPAQGDARERELFLFPKTLGDEHLVDLMLRARRNAPVQPP
PSQLAEKGGSLKSILEQVDKDKEDADARMSVVRAAGRIVRADVASEPALK
NTPGTREKHRYADELDMKVKQPRETLLSAFPPALVGLYQSMTDMALYREI
IASETEHPRKPWVWETAGRDGRHPTTSGDSEGEDGDGEKKNDVSQGEVTV
SLGPRTEEQARHIDSLNRGRRSTHRRLLLMCTVVVKAILCGRHMGSHNIK
GAQWAKSRGAGDLLRWRTSFWGRSGTGRTEHGGITSFRRNSTAAYSLRRG
TTPTGLRQTHASSLNSAR back to topmRNA from alignment at Scaffold_106:62212..63601+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1938_3a-0001 ID=EsuBft1938_3a-0001|Name=EsuBft1938_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1390bp|location=Sequence derived from alignment at Scaffold_106:62212..63601+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAAGAAGTCCTCCGTCGAGGTGAGATCCTGTACTGGCAGGACGT
CGCCGAGTGGGTAACAGCGGAACGCGCGAAGGTTGACATGGAGGAGTTAC
AAGGGAGATACCCAAGAAAAATCGTCCGGGCCTTGTTTTCAAGCATCGAG
GAGTCCGGGACTTCACGCTTGGTCAGTCAAGAGCCAGCACAAGGAGACGC
ACGCGAGCGGGAACTCTTCCTCTTCCCAAAAACCCTTGGGGACGAGCATC
TCGTTGACTTAATGCTGCGTGCTCGCCGTAATGCACCCGTACAGCCACCA
CCCAGCCAGCTAGCGGAAAAGGGCGGGTCTCTCAAGTCGATCCTGGAGCA
AGTCGACAAGGACAAGGAGGACGCAGACGCAAGGATGTCCGTCGTGCGGG
CAGCTGGTAGAATTGTTCGAGCCGACGTGGCGAGTGAGCCTGCCCTGAAG
AACACCCCCGGGACACGCGAGAAGCATCGCTACGCCGATGAGTTGGACAT
GAAAGTAAAGCAACCCAGAGAGACTCTGCTATCTGCGTTTCCTCCGGCCT
TGGTTGGGTTATACCAAAGCATGACGGACATGGCACTGTATCGCGAGATC
ATCGCATCGGAGACCGAACATCCTCGAAAGCCCTGGGTATGGGAGACCGC
AGGGCGAGACGGACGGCACCCTACCACCTCGGGCGACTCGGAGGGCGAGG
ACGGTGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGAAGTGACAGTG
TCGTTAGGGCCACGAACCGAGGAACAGGCCAGGCATATCGACAGCCTTAA
CCGCGGTAGGCGATCTACGCATCGTAGGCTTCTATTGATGTGTACGGTGG
TGGTGAAGGCAATTTTGTGTGGTCGGCACATGGGTTCGCACAACATCAAA
GGGGCTCAGTGGGCAAAGTCTAGGGGTACGTGTCGCGATGTGATCAACTT
TGTAGCGGAGCACGGTTTGTGGGCGACGACGTCGCATATTCAGCGCCGAG
AAGATTTCCACGCGAGCTTCGTAGAGGACAAGGACCTTCTGAGCAAGGAA
GCCGAATGCGCCCCCATTCCCCTCGGCAACTGTGATTGTGATTTTGACCC
GAGGGTCGGAGTTGGCCAGGGGGAGGGGCCTCATCTTCCTTTTATCGCTG
CGACGGCCTTGACGGTAGGGCCCGACGTAGGTCGAATGGACGACTGGTGG
TTGGTAAGGAGCCGGGGATCTCTTACGGTGGAGGACGTCATTCTGGGGCC
GGAGCGGGACCGGGAGGACGGAGCACGGCGGTATAACGAGTTTCCGGCGG
AACTCTACCGCGGCGTATTCACTGAGGCGCGGAACAACTCCGACAGGTCT
GCGGCAGACACATGCGTCGAGTCTGAACTCCGCAAGGTAA back to topCoding sequence (CDS) from alignment at Scaffold_106:62212..63601+ >EsuBft1938_3a-0001 ID=EsuBft1938_3a-0001|Name=EsuBft1938_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1107bp|location=Sequence derived from alignment at Scaffold_106:62212..63601+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAAGAAGTCCTCCGTCGAGGTGAGATCCTGTACTGGCAGGACGT
CGCCGAGTGGGTAACAGCGGAACGCGCGAAGGTTGACATGGAGGAGTTAC
AAGGGAGATACCCAAGAAAAATCGTCCGGGCCTTGTTTTCAAGCATCGAG
GAGTCCGGGACTTCACGCTTGGTCAGTCAAGAGCCAGCACAAGGAGACGC
ACGCGAGCGGGAACTCTTCCTCTTCCCAAAAACCCTTGGGGACGAGCATC
TCGTTGACTTAATGCTGCGTGCTCGCCGTAATGCACCCGTACAGCCACCA
CCCAGCCAGCTAGCGGAAAAGGGCGGGTCTCTCAAGTCGATCCTGGAGCA
AGTCGACAAGGACAAGGAGGACGCAGACGCAAGGATGTCCGTCGTGCGGG
CAGCTGGTAGAATTGTTCGAGCCGACGTGGCGAGTGAGCCTGCCCTGAAG
AACACCCCCGGGACACGCGAGAAGCATCGCTACGCCGATGAGTTGGACAT
GAAAGTAAAGCAACCCAGAGAGACTCTGCTATCTGCGTTTCCTCCGGCCT
TGGTTGGGTTATACCAAAGCATGACGGACATGGCACTGTATCGCGAGATC
ATCGCATCGGAGACCGAACATCCTCGAAAGCCCTGGGTATGGGAGACCGC
AGGGCGAGACGGACGGCACCCTACCACCTCGGGCGACTCGGAGGGCGAGG
ACGGTGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGAAGTGACAGTG
TCGTTAGGGCCACGAACCGAGGAACAGGCCAGGCATATCGACAGCCTTAA
CCGCGGTAGGCGATCTACGCATCGTAGGCTTCTATTGATGTGTACGGTGG
TGGTGAAGGCAATTTTGTGTGGTCGGCACATGGGTTCGCACAACATCAAA
GGGGCTCAGTGGGCAAAGTCTAGGGGAGCCGGGGATCTCTTACGGTGGAG
GACGTCATTCTGGGGCCGGAGCGGGACCGGGAGGACGGAGCACGGCGGTA
TAACGAGTTTCCGGCGGAACTCTACCGCGGCGTATTCACTGAGGCGCGGA
ACAACTCCGACAGGTCTGCGGCAGACACATGCGTCGAGTCTGAACTCCGC
AAGGTAA back to top
|