EsuBft1910_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1910_5a-0001
Unique Name	EsuBft1910_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:533333..537063 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1910_5
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	Coil
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SSF58113
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	194
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-15_002380.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1910_5a	EsuBft1910_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 533333..537063 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1910_5a-0001	EsuBft1910_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 533520..535879 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1910_5a-0001-exon	agat-exon-66380	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 533333..533605 +
EsuBft1910_5a-0001-exon	EsuBft1910_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 534794..534890 +
EsuBft1910_5a-0001-exon	agat-exon-66379	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 535487..537063 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1910_5a-0001-exon	agat-five_prime_utr-4611	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 533333..533519 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1910_5a-0001-cds	EsuBft1910_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 533520..533605 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1910_5a-0001-exon	agat-three_prime_utr-7035	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 535880..537063 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:533333..537063+
coding sequence from alignment at Scaffold_242:533333..537063+

spliced messenger RNA

>EsuBft1910_5a-0001 ID=EsuBft1910_5a-0001|Name=EsuBft1910_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1947bp|location=Sequence derived from alignment at Scaffold_242:533333..537063+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAGAAAGCGAGAAAGCACAACCAGCCAGACTTCGTCTCTCCTTTCCTCC
CCTCTCTTTGCCTTCCTTGCCTCGCGCCACAGCACTGAAACATCGCCAGC
AGCTCCCGTCAACGTTGTGTTAGGGGCTAGCGGGGTGAAGCAGCCACAAA
CTCCACCCAACACAGCGAGCGTCACACGAAACGCGAGATGAGGATCTCTT
TGCTTCAACTCTGCTTCGGCTTCATTGCTGTCGGTTTGGTGTTGGGCGAG
CAAGTTGAGGAGGCACCGTCCAGCAATTTGTTCAAGAAGTTTATCACCAA
GACGAAGAATGGCCTCGGCAAAGTGCGAAAGTCGCTTGCTGTTAAGAAGG
ACAAGGCGGTAGACGAGGAGGACCCGCTGGGAGAAGGGGTTGAAGCAGTG
CTAGCCGCCATCGACGAATTCGTGGCCGAGGGGGAGAAAAACACCGCAAG
AGCGGCGGAGGACGTAAAAAAAGTTGTCGACGAGACTAAGGAATCGGTGA
AGAGTGCTATTTCAGCCTCTAAGGACAAGTTAGACGGAGTGGGTGCCGAC
ATCAAGTCGACGGTAGACGCAGTTGTCGAGGGTGCCGCAGCGGATGTGGA
GGCGGTCAGGGGGTCTCTTCAGGACGACATCAAGCATGTCGGAGATCAAG
TCACCGAAGACGCTAGTGAGGCCGCGGAATCTGCTGCGGCAGCGTTTAAA
AAGGCGCAAGAGGACGCTGAAGAGACCGCCGAGAAGGCGTCCACGGCTGC
GGGAGAGTTGTGATTTGGTGGATGAGCTGTACTCTCCTCCTCGTCAACGG
AACCTGAGCTATTCGAAGAATAGCAAGGACTGTTGGTGACGTTGCAATAT
CAGGCGTTCGTGTAAGGAGTGCATTACGAAGAATTCGGTACTGCACCTCT
TGTCAGATGTTGTGCGTGGTAAGTCCGGTTTGGTGACGTCCGTTCAAGCA
CTTCTTGTGCGTTTGGCTTCCTGGCGTTGCAGTCGTGACTGTGACTGCTA
GTAGGGCAACAATCTGTGACCGTTGCTCTTCCTCGCCGTACTTCTCTTGC
TGTTCAAAGTATTAGTTTTTTTATGCATATTTTGGGTTTGGTTGAAAGTG
CCTCTTGACTACTTGTAGAAGACCCAGACATGCTTGACTTGGGATTTTGA
ATTTTGTAATGTTAAAAAGTACGTGCGATTGGGGTGGTTCATAGGGAGAT
TTGTGCCCCTCTATTTGGACGTTGCCCTCAATTTTTTGTGTGTGGAGCGT
CCGCCGCCAGGTTTTTGTGGGCGCTGTCTGATGTTTATGTCTGGTACGGT
CTGGATCCCTTGTGTATGGAATCGTTTGGCCTTGGTAGAGCAGGAGTGCC
ATACCTTTGTTTGAAAGTAGAATATCAGGACGAATTCAACGTTCCTTTTT
GCTTCCCGCACATTGTGCCAATCCATCATGTCACGAGGGCTGCTTCGGCA
TGATGGCGCCAGTCCTTGCGGCCGTAGTGTACTCCCCAAGACCACGACGA
TGATATTTTTCACTGCAGTTTGCGTTTTCGGATTACTTGGTCAAGGAACG
GTGTGTTCAAGAGTTAACACAGCATCATCCGCGAGTATGCACGGACGAGT
ACACAGGAACGCGTGAAAGAATCGTGAGTTAGATACGACAACGAAGCGAT
GCCATTCGAAGCTCGTCCTCGATATTCGCACGTGGGCGGGGAGATTTGGA
GTGGTTGCGAGAATGAAAACAAATGTAGTGACGCACACAAGCCAACTAGC
TTGTGCATGCCGGGAGGACGCTAGGGGCCACTAGGAACGGCCAGTTCAGC
CCGCCTGGCGCGTTTCTCTTTCTGTAAGTCTTGACGGTGATGACGCGAGA
TTCAGGGCTCGTCGTGTGTGTACACAGCAGTGTTTGAAGTTTCGTCCCAG
CTATCATGGGCGTCAATCCATTCCTTTCAGTAAATGTTTCGTATGCG

protein sequence of EsuBft1910_5a-0001

>EsuBft1910_5 ID=EsuBft1910_5|Name=EsuBft1910_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MRISLLQLCFGFIAVGLVLGEQVEEAPSSNLFKKFITKTKNGLGKVRKSL
AVKKDKAVDEEDPLGEGVEAVLAAIDEFVAEGEKNTARAAEDVKKVVDET
KESVKSAISASKDKLDGVGADIKSTVDAVVEGAAADVEAVRGSLQDDIKH
VGDQVTEDASEAAESAAAAFKKAQEDAEETAEKASTAAGEL

mRNA from alignment at Scaffold_242:533333..537063+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1910_5a-0001 ID=EsuBft1910_5a-0001|Name=EsuBft1910_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3731bp|location=Sequence derived from alignment at Scaffold_242:533333..537063+ (Ectocarpus subulatus male Bft15b)
TGAGAAAGCGAGAAAGCACAACCAGCCAGACTTCGTCTCTCCTTTCCTCC
CCTCTCTTTGCCTTCCTTGCCTCGCGCCACAGCACTGAAACATCGCCAGC
AGCTCCCGTCAACGTTGTGTTAGGGGCTAGCGGGGTGAAGCAGCCACAAA
CTCCACCCAACACAGCGAGCGTCACACGAAACGCGAGATGAGGATCTCTT
TGCTTCAACTCTGCTTCGGCTTCATTGCTGTCGGTTTGGTGTTGGGCGAG
CAAGTTGAGGAGGCACCGTCCAGGTGTGTGTTGATTGGAACGATGTGACG
ACGGCGTATGATTTTAGAAGCAGCACTCAACTGCCTACGATTTACGTATC
AGGTACATACTACAGCAGTAGTTCTGAACGACCCGATGGTCAAAACGGGT
CGTTGCAGTAACTCCGATCCGTTGACAACGCAACCGCGCGCGCGCCCGTG
TGTTGAACCACATCTACCTCTCCCCTAACGCGATAGCGTGTCATACTTGA
GTATTTCTTCACCACTTCCAGCAAGTGTCGCGATGGTTTCTGCAGCTCCG
TGGATTCTCTTGATTTACGTGTGGTAAGAGGATAAGATGTGTGCATTGTG
TCTGCGTAGCGCAACCGTAACCGCACAATTGGTCCTTGCATTGTGGTATT
GTGGTATGTATGTACATGTCTAGCGTTGAGAGTTGCTCCCACGAACATGA
ATAGAGTTCGGTTGTGTTGCTCCTCCCATCATGATGCTCATCTTGTTGGT
TTCAAAGAAAAGCATCACACGACTGCGTGTGATGGGCGATGGACGCCTAC
ATGGGCTGTGTAGTTTTTGGGTCGGGGAAACATTTCGTACTACAAATACG
TGTGTCAATCAAGCGCAGAGCACATTCTTCTGCTCTCGCGACATGAAAAC
CCCAACACGACTTGCAGGTCACACAGTAGGTATGTGTTTGTTTTGGTCCC
ATCTGTACAACCACAGGTGTTGTTTTCTAACTTTATCTCCGGCGGCGCTG
TCTTCAGTGTTAGCATCGAGCAGAGTTTCAGCACTCTCTCCTACCGAGCA
CTTCTGGTGTTACTTACACGCTTTCAATTACTACTGTTGTAAACAGATCG
CGAGGTGATCGCTCCGGATACTCTCGAACCAGAACCTACAGCAGTAGCAT
CATGAGCTATGCAAGGTTACCAAGTGAACCACCGGGACGAGGGATATTGC
TATCAAGCGTCGTAACGGCGACAGTACAATGATGAATACCTACCTGGTTG
GTGTTGAGTGTTGAGTGCCGCCTGCCTAGCCTTAAAAGGGATGGAGATTC
CTGAAAGAGCCGCAGCAGCATGCATTTGATTCTGTTGTTAAAGAAGTACA
CTCTCGAGATGTCTCGCGGTCTTTCCGAGCTGGACGTGGATGCTTACCTC
TTTGTGTCTGCGTGTGGGTCGGCGGCGTCGTATCTCCTTCCTCTGCTGCG
TTGTATGTCAGCAATTTGTTCAAGAAGTTTATCACCAAGACGAAGAATGG
CCTCGGCAAAGTGCGAAAGTCGCTTGCTGTTAAGAAGGACAAGGCGGTAG
ACGAGGAGGTAAGACCGTTTCTTGTGTGGTTTGCCAAACGTGTCACAAAT
CATTTTCTGGACAATAACACAAAACTCGCATCATGCTCGTTTTCGCATGA
CCTTGAGTATAGGAGAGGGCATGCCCACATGCCAAGCGCAGGAGTTGGAG
AACGTGACAATGCATCAAAGAGACGGGGCTATCGAGACAATGAAAATAGA
AAATAGATGCATGCGAAATGGTCGAGTTGGTACCTAAGGCATGATTGCGA
TCACCATACTGTACAAACGATTGCTGCAGAGAATGATGAATAAACAGGGG
GCAGATAAGCAAGACTCAGCAAGTTGGATTGTAAACGCGTTAAGATCGCC
CGACTGTTATCGGTACTGGCGTGCCTCAATTCGGAATAGGATGGTTGAGA
CCTCTGTCGTGAAATAGATGCATGGGTGGTGGTCAGATTGGAACACATGT
ACTTCCTGAAATCGGGGTTTTTGCCCGGTTTCCCCAATAATTCTTCGTAG
CATTATTTGGGGCCTGTCGGATCAGCGATCGATAGCATGTGGAAATTTGC
CGGTACTCCACGACCCCCGCTCTGTTTCGCCACGCCCCTATTACGTTTCG
TAAGGACCCGCTGGGAGAAGGGGTTGAAGCAGTGCTAGCCGCCATCGACG
AATTCGTGGCCGAGGGGGAGAAAAACACCGCAAGAGCGGCGGAGGACGTA
AAAAAAGTTGTCGACGAGACTAAGGAATCGGTGAAGAGTGCTATTTCAGC
CTCTAAGGACAAGTTAGACGGAGTGGGTGCCGACATCAAGTCGACGGTAG
ACGCAGTTGTCGAGGGTGCCGCAGCGGATGTGGAGGCGGTCAGGGGGTCT
CTTCAGGACGACATCAAGCATGTCGGAGATCAAGTCACCGAAGACGCTAG
TGAGGCCGCGGAATCTGCTGCGGCAGCGTTTAAAAAGGCGCAAGAGGACG
CTGAAGAGACCGCCGAGAAGGCGTCCACGGCTGCGGGAGAGTTGTGATTT
GGTGGATGAGCTGTACTCTCCTCCTCGTCAACGGAACCTGAGCTATTCGA
AGAATAGCAAGGACTGTTGGTGACGTTGCAATATCAGGCGTTCGTGTAAG
GAGTGCATTACGAAGAATTCGGTACTGCACCTCTTGTCAGATGTTGTGCG
TGGTAAGTCCGGTTTGGTGACGTCCGTTCAAGCACTTCTTGTGCGTTTGG
CTTCCTGGCGTTGCAGTCGTGACTGTGACTGCTAGTAGGGCAACAATCTG
TGACCGTTGCTCTTCCTCGCCGTACTTCTCTTGCTGTTCAAAGTATTAGT
TTTTTTATGCATATTTTGGGTTTGGTTGAAAGTGCCTCTTGACTACTTGT
AGAAGACCCAGACATGCTTGACTTGGGATTTTGAATTTTGTAATGTTAAA
AAGTACGTGCGATTGGGGTGGTTCATAGGGAGATTTGTGCCCCTCTATTT
GGACGTTGCCCTCAATTTTTTGTGTGTGGAGCGTCCGCCGCCAGGTTTTT
GTGGGCGCTGTCTGATGTTTATGTCTGGTACGGTCTGGATCCCTTGTGTA
TGGAATCGTTTGGCCTTGGTAGAGCAGGAGTGCCATACCTTTGTTTGAAA
GTAGAATATCAGGACGAATTCAACGTTCCTTTTTGCTTCCCGCACATTGT
GCCAATCCATCATGTCACGAGGGCTGCTTCGGCATGATGGCGCCAGTCCT
TGCGGCCGTAGTGTACTCCCCAAGACCACGACGATGATATTTTTCACTGC
AGTTTGCGTTTTCGGATTACTTGGTCAAGGAACGGTGTGTTCAAGAGTTA
ACACAGCATCATCCGCGAGTATGCACGGACGAGTACACAGGAACGCGTGA
AAGAATCGTGAGTTAGATACGACAACGAAGCGATGCCATTCGAAGCTCGT
CCTCGATATTCGCACGTGGGCGGGGAGATTTGGAGTGGTTGCGAGAATGA
AAACAAATGTAGTGACGCACACAAGCCAACTAGCTTGTGCATGCCGGGAG
GACGCTAGGGGCCACTAGGAACGGCCAGTTCAGCCCGCCTGGCGCGTTTC
TCTTTCTGTAAGTCTTGACGGTGATGACGCGAGATTCAGGGCTCGTCGTG
TGTGTACACAGCAGTGTTTGAAGTTTCGTCCCAGCTATCATGGGCGTCAA
TCCATTCCTTTCAGTAAATGTTTCGTATGCG

Coding sequence (CDS) from alignment at Scaffold_242:533333..537063+

>EsuBft1910_5a-0001 ID=EsuBft1910_5a-0001|Name=EsuBft1910_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_242:533333..537063+ (Ectocarpus subulatus male Bft15b)
ATGAGGATCTCTTTGCTTCAACTCTGCTTCGGCTTCATTGCTGTCGGTTT
GGTGTTGGGCGAGCAAGTTGAGGAGGCACCGTCCAGCAATTTGTTCAAGA
AGTTTATCACCAAGACGAAGAATGGCCTCGGCAAAGTGCGAAAGTCGCTT
GCTGTTAAGAAGGACAAGGCGGTAGACGAGGAGGACCCGCTGGGAGAAGG
GGTTGAAGCAGTGCTAGCCGCCATCGACGAATTCGTGGCCGAGGGGGAGA
AAAACACCGCAAGAGCGGCGGAGGACGTAAAAAAAGTTGTCGACGAGACT
AAGGAATCGGTGAAGAGTGCTATTTCAGCCTCTAAGGACAAGTTAGACGG
AGTGGGTGCCGACATCAAGTCGACGGTAGACGCAGTTGTCGAGGGTGCCG
CAGCGGATGTGGAGGCGGTCAGGGGGTCTCTTCAGGACGACATCAAGCAT
GTCGGAGATCAAGTCACCGAAGACGCTAGTGAGGCCGCGGAATCTGCTGC
GGCAGCGTTTAAAAAGGCGCAAGAGGACGCTGAAGAGACCGCCGAGAAGG
CGTCCACGGCTGCGGGAGAGTTGTGA