EsuBft1910_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1910_2a-0001
Unique NameEsuBft1910_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:558762..559722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G911
ProteomeIdEsuBft1910_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length30
Hectar predicted targeting categoryother localisation
Evalue1.15e-48
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K04427,ko:K20717,ko:K20718
KEGG Pathwayko04010,ko04013,ko04016,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04016,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
EC2.7.11.1,2.7.11.25
Descriptionprotein kinase activity
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1910_2aEsuBft1910_2aEctocarpus subulatus male Bft15bgeneScaffold_242 558762..559722 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1910_2a-0001-exonagat-exon-66357Ectocarpus subulatus male Bft15bexonScaffold_242 558762..558939 -
EsuBft1910_2a-0001-exonagat-exon-66356Ectocarpus subulatus male Bft15bexonScaffold_242 559256..559342 -
EsuBft1910_2a-0001-exonagat-exon-66358Ectocarpus subulatus male Bft15bexonScaffold_242 559402..559436 -
EsuBft1910_2a-0001-exonEsuBft1910_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 559714..559722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1910_2a-0001-cdsEsuBft1910_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 558762..558939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1910_2a-0001EsuBft1910_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 558762..559722 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1910_2a-0001 ID=EsuBft1910_2a-0001|Name=EsuBft1910_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=309bp|location=Sequence derived from alignment at Scaffold_242:558762..559722- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGAGTTGGATGTGGGCATTGGCCAAAGAATCGAGTTCAGGTACAC
TGATCTGAAAAAAATCAAGCAGCAAGGACTCAAGACATCTGACTTGGACA
AGCTTGACATCAAGAACCCTCTTCAACGCAGGTTCCTGATGGATGTGGGC
AGATCTCCTTTCCGCACGGCGCTGAAGGTGTCTATCGTCGGCCATCGATC
GTTCGGGGATATTGTGATGTTCAAGGTGGTGGCAGAGTGGCGGGCGTGGT
ACTCGAAGACAGAGAAACTGTACACCGACTTCAATAAGCTACACAACAAG
CTGCGGTGA
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protein sequence of EsuBft1910_2a-0001

>EsuBft1910_2 ID=EsuBft1910_2|Name=EsuBft1910_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=102bp
MPELDVGIGQRIEFRYTDLKKIKQQGLKTSDLDKLDIKNPLQRRFLMDVG
RSPFRTALKVSIVGHRSFGDIVMFKVVAEWRAWYSKTEKLYTDFNKLHNK
LR
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mRNA from alignment at Scaffold_242:558762..559722-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1910_2a-0001 ID=EsuBft1910_2a-0001|Name=EsuBft1910_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=961bp|location=Sequence derived from alignment at Scaffold_242:558762..559722- (Ectocarpus subulatus male Bft15b)
ATGCCTGAGGTATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTCG
CGACTTTCTAAGTCGATTATGGTTTACTAACAAACAATGTAAGGACATGA
AACATTATTCACATTTCGGTGTATTTTGGACGCACCGGCTGGGGTCATCG
GGAGGGATACAAGGGGGGGAATATTCGTTGTGACGAAAGGCGATTCATAA
AAGGCAGACGAATTCAAACACAAAAGCATGTCTGGTCTGGGAAATGCATT
GAGAGTGTCAGCTCTTGGAAACGTCTCTTGTACAAGTTGGATGTGGGCAT
TGGCCAAAGAATCGAGTTCAGGTAAGCAACCTTGGACCCCCTCGCCCCCC
GCGACCCCCGCGGTTGCCTGTAATCCACAGGTACACTGATCTGAAAAAAA
TCAAGCAGCAAGGACTCAAGACATCTGACTTGGACAAGCTTGACATCAAG
AACCCTCTTCAACGCAGGTATTCCTTGGTTTACACCGAATACAAATGTTG
AAATGCAAAGTATGCATGCTTGTGCTCCTGATCAGGTGCATCCACGGGAT
CAATTTACCCATGTGTTCCGCAGTTCTTTTGAGTTCGGCGGTTGTTGTCA
ACAGGAGGGGCGCCCACACGTTGGGCCAAGAGCTTGCGAAAGAAACCAAG
CGATAAACACCAAAACCAAGCGCAAGCAGGTGGTGTCTATGTCCTTCGGT
TTGTAACACCGACCCCTACGCATTGATCGGCAATGCTTGTTGATATGGAC
ACTCAATCATTTGCATGCCTGTTGGTGAATCAGGTTCCTGATGGATGTGG
GCAGATCTCCTTTCCGCACGGCGCTGAAGGTGTCTATCGTCGGCCATCGA
TCGTTCGGGGATATTGTGATGTTCAAGGTGGTGGCAGAGTGGCGGGCGTG
GTACTCGAAGACAGAGAAACTGTACACCGACTTCAATAAGCTACACAACA
AGCTGCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_242:558762..559722-

>EsuBft1910_2a-0001 ID=EsuBft1910_2a-0001|Name=EsuBft1910_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=309bp|location=Sequence derived from alignment at Scaffold_242:558762..559722- (Ectocarpus subulatus male Bft15b)
ATGCCTGAGTTGGATGTGGGCATTGGCCAAAGAATCGAGTTCAGGTACAC
TGATCTGAAAAAAATCAAGCAGCAAGGACTCAAGACATCTGACTTGGACA
AGCTTGACATCAAGAACCCTCTTCAACGCAGGTTCCTGATGGATGTGGGC
AGATCTCCTTTCCGCACGGCGCTGAAGGTGTCTATCGTCGGCCATCGATC
GTTCGGGGATATTGTGATGTTCAAGGTGGTGGCAGAGTGGCGGGCGTGGT
ACTCGAAGACAGAGAAACTGTACACCGACTTCAATAAGCTACACAACAAG
CTGCGGTGA
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