EsuBft190_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft190_19a-0001
Unique NameEsuBft190_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:445289..448818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft190_19
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length131
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft190_19aEsuBft190_19aEctocarpus subulatus male Bft15bgeneScaffold_463 445289..448818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_19a-0001EsuBft190_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 448441..448725 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_19a-0001-exonagat-exon-18588Ectocarpus subulatus male Bft15bexonScaffold_463 445289..445942 -
EsuBft190_19a-0001-exonagat-exon-18589Ectocarpus subulatus male Bft15bexonScaffold_463 446376..446532 -
EsuBft190_19a-0001-exonagat-exon-18587Ectocarpus subulatus male Bft15bexonScaffold_463 446794..446841 -
EsuBft190_19a-0001-exonEsuBft190_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 448366..448818 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_19a-0001-exonagat-three_prime_utr-7020Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 445289..445942 -
EsuBft190_19a-0001-exonagat-three_prime_utr-7021Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 446376..446532 -
EsuBft190_19a-0001-exonagat-three_prime_utr-7022Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 446794..446841 -
EsuBft190_19a-0001-exonagat-three_prime_utr-7023Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 448366..448440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_19a-0001-cdsEsuBft190_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 448441..448725 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_19a-0001-exonagat-five_prime_utr-4600Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 448726..448818 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft190_19a-0001 ID=EsuBft190_19a-0001|Name=EsuBft190_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1312bp|location=Sequence derived from alignment at Scaffold_463:445289..448818- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGATTTTTCGCATGCGGGGCCGTAGGGAAACACATTTTTTCTTGGACG
TAGCTCAAAACGTGAAGGTGTTCCGAACCAGCTTGTCCTCCTCATGAACC
CTGAAAACATGCCCCGCACACGGTCCTCCCACATTCTCCTTTCCTGGCAG
CTAAAGCGACCAAAAAGAATCGAGCACCTGCTTCACCTCACTCTCCCGCT
TAATATGAACTGGGTAAATAGAACGTGGCGACAGATGTTAGGAGCCGTTG
AGCGGAAGTTGAGTGCCAAATGTGTGGCGTGTGGCCGAACAAAATATCAT
CACGTGTCTGAGATGGGCGGGCCGGGCGGCTGGGGACAGCGGACGAATAG
CCGCCGGCAATGCGACGGGATCGGGTAGCCGCTAGTGATGCGAAGGATTG
GATGTTAAGACAGGCACCGCCGTCCGCCCTCGCGCCAAACAGGGCACAAC
CTGGCGTGCACTCGGCTGCCGGTTTCGAGTGGAATCGGAAGAGCAACAGT
GAACGGCAGGACTCAGGTCTCCAGACAACCGCGACATGTCGGAGCTAGTG
CTCGGCGCCAGTGGTTCAACTCTGTCGCGGCGCATTTGGCGCTAGTTGAC
TGGTCTCCTGGTTAGCGGCGGCAACGGGACGTGCGTGCCCCCGCCATGTT
TTCCCGGGGGTGTGGGGACTGTTCGAAGCGTAACGATCGACTACCTCGCT
CCCGTCCAATGGTGGCGGGTGCAATCCGCGATGCCACAGCCAGCAAGCGC
CTTCCTGATCAAGCCCTACCTATACGTTGGCAGAGGCGGCGAGTCAGGGA
GCGATGGCTACGGCCTGCGTGCCGAGACTGGCTGACTCCGATCGGCAGTG
CCCCTTATTCAGAGAGCAGAGCGTCTCGTCGGAGCGGTAGAATGACAGAA
GTAGCGCGGGAGACCACTTTCGATTTTCTCGTTGTTGATGGGTTTATACA
CTTTGCATAACCGGGGGAGACATGAAGGAATGGAATGAGTGAGAATGAGG
AAAGCATCGCATTCAGGGGGCGGTGTTTCGACTGCTTGGCAGGCCTGGCA
ACAGTGGAGCAAGGTCGTCGGGTACAAATTCTGGAATAAGGAAGCTCGGG
GGTTGGGTGGGGCTCTCGAGATCAGTACGTCGTGCAGTGTACAAGATGGG
AATTCCGAATGCTGAAAAGAAGCAAGTTTTGGGGGGAGACACGAGTAGCA
GAATGGAAGACAGAGATCGGGTGATAGGTATAGTTGTCCCCAAACATAAG
CGATGGCATCTGTGGGCTTGCCGGTGGGGTTTTCCGAAAAAATGACGCAA
TCCCGCGTGAAG
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protein sequence of EsuBft190_19a-0001

>EsuBft190_19 ID=EsuBft190_19|Name=EsuBft190_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MNPENMPRTRSSHILLSWQLKRPKRIEHLLHLTLPLNMNWVNRTWRQMLG
AVERKLSAKCVACGRTKYHHVSEMGGPGGWGQRTNSRRQCDGIG
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mRNA from alignment at Scaffold_463:445289..448818-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft190_19a-0001 ID=EsuBft190_19a-0001|Name=EsuBft190_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3530bp|location=Sequence derived from alignment at Scaffold_463:445289..448818- (Ectocarpus subulatus male Bft15b)
GCTGATTTTTCGCATGCGGGGCCGTAGGGAAACACATTTTTTCTTGGACG
TAGCTCAAAACGTGAAGGTGTTCCGAACCAGCTTGTCCTCCTCATGAACC
CTGAAAACATGCCCCGCACACGGTCCTCCCACATTCTCCTTTCCTGGCAG
CTAAAGCGACCAAAAAGAATCGAGCACCTGCTTCACCTCACTCTCCCGCT
TAATATGAACTGGGTAAATAGAACGTGGCGACAGATGTTAGGAGCCGTTG
AGCGGAAGTTGAGTGCCAAATGTGTGGCGTGTGGCCGAACAAAATATCAT
CACGTGTCTGAGATGGGCGGGCCGGGCGGCTGGGGACAGCGGACGAATAG
CCGCCGGCAATGCGACGGGATCGGGTAGCCGCTAGTGATGCGAAGGATTG
GATGTTAAGACAGGCACCGCCGTCCGCCCTCGCGCCAAACAGGGCACAAC
CTGGTGAGAAATTGAATTGAATATCGGCTTTTCTGTGAAAAAGCTTCTTT
TCTGTGGCAGCACCTCGGGGAAGGAAGTCTATCACCCCCTCCACACGTAC
ACACAGCTAAGGACAAAACTAGAGACACGTGGGCAGACATAATTGTGCGC
ACACCGCCCTATTTTCGGATCTCCGCAAACTAACGGAATGATCGCGCTGT
AACCGAACCTAGTGGTACGGCGCCTTTGTAGCTGTGACGCTGCGTTCATT
TCTCTAGACAGCTGGATTGTGTCTCACGACAAGATCGGTAGCTGCTCAGT
CTCGAAACCCTTTCACTTGTGTGGTTCGTTTTGTCGGGTTTGCGGGCCAG
AGATGTGCCGCTGCTTCTGCTGGTGCTGCTTGTTGCTCCTGATGCTCTCT
CTACTCCCCATTCCACAACGCAACAGCGCAACACAGATGCCCTCCCGCCT
ACATACTTTGCGCTTTTTGAACTTGTGTGTGGCCGTGTTCCTACACAGAA
AAATCCAGGCCGTTCTCTCCGGCACCTGCCACGGCTGACGGTGTATGAAA
TCCGTGTGCATGTGTGATCTGACTGTCAGGAGGTCTCCTGAGCTTCCTCC
TCCCACGGTATTCCACACCATGTGGAGATTCTGTAGGCATGTAAATACAA
CCCTTACAACAGCAGAGCGCGACAAGCATCGGCGGTGGTTGAAGTCATGG
CCCAGACAGAGCTTGAGAAAACTACTATGACAAGGATTCCGGAGAATCGT
GACGGGTGCCTCGTTCGTATTTGTCTTTACTTCTTTTTCGCAAACAAAGT
GGTACACACGCGCGACCTCGGCGATTTTCAGAGGTGCCTTAGTGCGTCTA
GGCAGCGGCATTGGACCGCCTGCGCCTCCGACTGTAGAGACATTGCCGTA
TCCCTCATCGTACCAAGCCAGTCAGCACAGCTCAAAAGACAAGCAAATAC
TCCGGAGTAAAAAATATTCAAACCTTCCAGTGGTTCCACTCGCTGGCTGC
CAAATACTCCCAACGTTGCAGCTACCGCACCAGCACACGATTGATGCATC
CTCTCCATTCCACTGTTTTCCATTTATCACAATAAATATCCAGGGGGGCA
CATGCCGTTTACTTTTCAACGTCGTAAAAATACATGGCACCGTACGCAAG
ATGAACCAGGTTAATACGAGTGGGAGAGAACAAAGTCCAAAGGGCTGTCA
TGATATTTTTACGGTTCTCGCAACGAATCAACAAGAGCAGTCGTTTGCAG
TAGGATGAACCAGTGGTTGGTGTCCCGGGTAGAGAATGTAGCATGGTTGC
TTGTTGTGTGCTACATCAGATTTTGTACGAACTGCCCATTCGATTGAGTT
TCACGTGTTGTGGAGACTGCCATTTACATAGCTGCCGAATAAGCAAAAAA
ACATCGCCGCACGCTTATCATATAGTCTCCGGATATTTTGTCGCGAAGGT
TCATGTAGAAGCGTACAATCTCTCAAGGCATGTAAATTTCTGGTCTGCCT
CCTTTCCTCAAACCATTGCTGTACCAGGCGTGCACTCGGCTGCCGGTTTC
GAGTGGAATCGGAAGAGCAACAGTGGTGAGGACACGCTTTGACAGCTGCC
GCTCGCTTCAGTTCTGCCGGTGGAACCACGCAGAGAGGAAGATTTGAGAG
GAAGCAGAACCTGCAGGGAACCAATATTGTTATTCCAGCAGCAAGACTAA
GTGGTGCAGGGTATTTGGGTGATGTTCCGGAAGAACGAACAACCTTTTCG
CTGTTGCTACGACTTGACCCCGCATCGTCAACCGATCATATGTTTCAATC
GCCGCCCCGCTCCCCTCCTCCTCTTCTTGTGGTCAGAACGGCAGGACTCA
GGTCTCCAGACAACCGCGACATGTCGGAGCTAGTGCTCGGCGCCAGTGGT
TCAACTCTGTCGCGGCGCATTTGGCGCTAGTTGACTGGTCTCCTGGTTAG
CGGCGGCAACGGGACGTGCGTGCCCCCGCCATGTTTTCCCGGGGTATGTT
GTTCACAGGACATGCTGCACATTTTTTTCGGAAAATTCTGTAGGCTGTGG
CTAGGCTCTGTAGAGCCGGGGATAAAGTAGGTCAGGCGTGAATGCGACAC
GTTCACGGAAACAATCAAAAATATTGCAGTCTCCTTGTCATCCAGAGAGT
GCCGAAGGTGGATAGTGTAGCCATCGCTCGACCTGGTGCCCCATTCCTCG
TCGATTTCCTGCACGATACTGCCCTTGGGATGTTGTCGCGGCGCTTTACA
CGGTTGTCGTCACCTATGCCAATTTCGCAACCGATGTGGTTTTGAGAGTG
ATACGCCACGTAGCTGATGCTCAGTTCGACAAAAACAGTTTTGACTCTCT
TGTACTGTCGCCCCCCCTCGCTCGTTGTTGTTTTTTGTCTGTTTCGGCAT
GTTCGTGCCTGGTTGAACTCGGGCAGGGTGTGGGGACTGTTCGAAGCGTA
ACGATCGACTACCTCGCTCCCGTCCAATGGTGGCGGGTGCAATCCGCGAT
GCCACAGCCAGCAAGCGCCTTCCTGATCAAGCCCTACCTATACGTTGGCA
GAGGCGGCGAGTCAGGGAGCGATGGCTACGGCCTGCGTGCCGAGACTGGC
TGACTCCGATCGGCAGTGCCCCTTATTCAGAGAGCAGAGCGTCTCGTCGG
AGCGGTAGAATGACAGAAGTAGCGCGGGAGACCACTTTCGATTTTCTCGT
TGTTGATGGGTTTATACACTTTGCATAACCGGGGGAGACATGAAGGAATG
GAATGAGTGAGAATGAGGAAAGCATCGCATTCAGGGGGCGGTGTTTCGAC
TGCTTGGCAGGCCTGGCAACAGTGGAGCAAGGTCGTCGGGTACAAATTCT
GGAATAAGGAAGCTCGGGGGTTGGGTGGGGCTCTCGAGATCAGTACGTCG
TGCAGTGTACAAGATGGGAATTCCGAATGCTGAAAAGAAGCAAGTTTTGG
GGGGAGACACGAGTAGCAGAATGGAAGACAGAGATCGGGTGATAGGTATA
GTTGTCCCCAAACATAAGCGATGGCATCTGTGGGCTTGCCGGTGGGGTTT
TCCGAAAAAATGACGCAATCCCGCGTGAAG
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Coding sequence (CDS) from alignment at Scaffold_463:445289..448818-

>EsuBft190_19a-0001 ID=EsuBft190_19a-0001|Name=EsuBft190_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_463:445289..448818- (Ectocarpus subulatus male Bft15b)
ATGAACCCTGAAAACATGCCCCGCACACGGTCCTCCCACATTCTCCTTTC
CTGGCAGCTAAAGCGACCAAAAAGAATCGAGCACCTGCTTCACCTCACTC
TCCCGCTTAATATGAACTGGGTAAATAGAACGTGGCGACAGATGTTAGGA
GCCGTTGAGCGGAAGTTGAGTGCCAAATGTGTGGCGTGTGGCCGAACAAA
ATATCATCACGTGTCTGAGATGGGCGGGCCGGGCGGCTGGGGACAGCGGA
CGAATAGCCGCCGGCAATGCGACGGGATCGGGTAG
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