EsuBft190_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft190_18a-0001
Unique Name	EsuBft190_18a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_463	contig	Scaffold_463:428904..432850 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G957
ProteomeId	EsuBft190_18
Protein domains	IPR002889
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	354
Evalue	8.22e-19
EggNOG OGs	KOG4157@1\|root,KOG4157@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00194
KEGG ko	ko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG Reaction	R01098
KEGG Pathway	ko00052,ko04011,ko04139,map00052,map04011,map04139
EC	1.1.3.9,1.2.3.15,3.2.1.59
Description	protein xylosyltransferase activity
COG category	U
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft190_18a	EsuBft190_18a	Ectocarpus subulatus male Bft15b	gene	Scaffold_463 428904..432850 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft190_18a-0001-exon	EsuBft190_18a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 428904..428996 +
EsuBft190_18a-0001-exon	agat-exon-18586	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 429395..432850 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft190_18a-0001-cds	EsuBft190_18a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_463 428904..428996 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft190_18a-0001-exon	agat-three_prime_utr-7019	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_463 429458..432850 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft190_18a-0001	EsuBft190_18	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_463 428904..429457 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_463:428904..432850+
coding sequence from alignment at Scaffold_463:428904..432850+

spliced messenger RNA

>EsuBft190_18a-0001 ID=EsuBft190_18a-0001|Name=EsuBft190_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3549bp|location=Sequence derived from alignment at Scaffold_463:428904..432850+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCGGATAACGGTGGCACCATACGGCAACAGATCTGTGCGGACGC
TTGCGCTGAGTATGCCTACTATGGCACACAGTACGGCAGGGAGTGCTGGT
GCGGCAACAACGCCGACTACGACGTCTACGGAGAAGCAACGTGCGACATG
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NNNNNNNNNNNNNNNNNNNNNNNNNGGTCCGGTGAGAACCCGGCGTGCTC
CGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTACCGACTACGGGTG
CACGGCTATAACTACACGCCCCCAGTCGCACCTTAGAGGTTAGGGAAAAC
GTTGTTGAGCCACCGTTGGCGACGTACTGCAAAAAGGAACGATTAGCCGT
CGATGATGGTATTTTTTGTGCGCGCAGCCGCAAGTACCCGTTAGTTGCTC
GGAATCAAGCAGTTTCACTTGTTGTCGTTTGCACCCTTGCAAGTTGCTTG
TACCTTCTTTTTTTTGCTGTTTTCGCTGTCCCCTGCGGGCTGGTAGATGA
GTCGCGTTGCGGTGAGCGCGTGGGGTGGTCGCAAGTGTCAAAGTAGAATA
CATTTATCTATTTTTTTGGGTATATTCGCGGCTGTGTCGAAGTGCGGCGC
ACGCCTCCTGTGCCTGTTGTGTTTTGAGAGAGAGAGAGAGGGAGAGCGCG
CTTCCCACAGCAGCGTTAGAACAACCGCCTTAGTGCACCTAATACGTCGG
GCAGGGGGAGAGTCATTCGCCGCACCACATCACAAACAGGGCTGGCAGCA
GGCCGAACGTTTTGGGGGGGAGGCGTGATAGCGCCGCAGAGAGTAGACTA
ACTACATGGAAGTGTTTCATTGCTTTTGTAGAAGAAGCTTGGTCTTGACA
TTACTACCGGCGTTGTGCCCAGTGAGGTGTTGGTGCTCCACGACGTGCCT
GTGAAGGAAGCCTTCGACCTGAAGTGTGGGGAAAACGATGGCATGGTCTA
TACGGTCCATCTTCCGACATTACGCCCGAACGTGTTGGATGCCCGCGAT

protein sequence of EsuBft190_18a-0001

>EsuBft190_18 ID=EsuBft190_18|Name=EsuBft190_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MVPDNGGTIRQQICADACAEYAYYGTQYGRECWCGNNADYDVYGEATCDM
AX

mRNA from alignment at Scaffold_463:428904..432850+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft190_18a-0001 ID=EsuBft190_18a-0001|Name=EsuBft190_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3947bp|location=Sequence derived from alignment at Scaffold_463:428904..432850+ (Ectocarpus subulatus male Bft15b)
ATGGTGCCGGATAACGGTGGCACCATACGGCAACAGATCTGTGCGGACGC
TTGCGCTGAGTATGCCTACTATGGCACACAGTACGGCAGGGAGGTGAGTT
GAGACTTGGAGAGCGCGACCCTTTTGTGTGTCTGAAGGTTTTTGTGGAGT
GTCTGGACAACAGTTCGGGTTCCCAAAACTGAACATGAAGTACCCAAAAC
AGTTGGCATCACTGAACAGCTGGGCAGTGTACGTGTGACTACGGGTTGGA
ACAAACGGCACAAGCGCTGTGAGCGCTGATTTGAGGGAAAGCCAAGAAAA
CAACACAAGAGAATAATGTACGCGCGTGTCTGTGGGGCTGGAACCTAGAA
CATACCGCTCTCGACCATGTAGACGAGGGCGATGACAGTCGTGCGCGACA
CACTGCGGTTACCTCTCTCTTCATGCTGACAAAGCCAATCCCCTAGCGTC
GTCGCCCTTCTTCTTCTTGTTCTTCGAATGGACGTCGTCAGTGCTGGTGC
GGCAACAACGCCGACTACGACGTCTACGGAGAAGCAACGTGCGACATGGC
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NNNNNNNNNNNNNNNNNNNNNNNGGTCCGGTGAGAACCCGGCGTGCTCCG
TCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTACCGACTACGGGTGCA
CGGCTATAACTACACGCCCCCAGTCGCACCTTAGAGGTTAGGGAAAACGT
TGTTGAGCCACCGTTGGCGACGTACTGCAAAAAGGAACGATTAGCCGTCG
ATGATGGTATTTTTTGTGCGCGCAGCCGCAAGTACCCGTTAGTTGCTCGG
AATCAAGCAGTTTCACTTGTTGTCGTTTGCACCCTTGCAAGTTGCTTGTA
CCTTCTTTTTTTTGCTGTTTTCGCTGTCCCCTGCGGGCTGGTAGATGAGT
CGCGTTGCGGTGAGCGCGTGGGGTGGTCGCAAGTGTCAAAGTAGAATACA
TTTATCTATTTTTTTGGGTATATTCGCGGCTGTGTCGAAGTGCGGCGCAC
GCCTCCTGTGCCTGTTGTGTTTTGAGAGAGAGAGAGAGGGAGAGCGCGCT
TCCCACAGCAGCGTTAGAACAACCGCCTTAGTGCACCTAATACGTCGGGC
AGGGGGAGAGTCATTCGCCGCACCACATCACAAACAGGGCTGGCAGCAGG
CCGAACGTTTTGGGGGGGAGGCGTGATAGCGCCGCAGAGAGTAGACTAAC
TACATGGAAGTGTTTCATTGCTTTTGTAGAAGAAGCTTGGTCTTGACATT
ACTACCGGCGTTGTGCCCAGTGAGGTGTTGGTGCTCCACGACGTGCCTGT
GAAGGAAGCCTTCGACCTGAAGTGTGGGGAAAACGATGGCATGGTCTATA
CGGTCCATCTTCCGACATTACGCCCGAACGTGTTGGATGCCCGCGAT

Coding sequence (CDS) from alignment at Scaffold_463:428904..432850+

>EsuBft190_18a-0001 ID=EsuBft190_18a-0001|Name=EsuBft190_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_463:428904..432850+ (Ectocarpus subulatus male Bft15b)
ATGGTGCCGGATAACGGTGGCACCATACGGCAACAGATCTGTGCGGACGC
TTGCGCTGAGTATGCCTACTATGGCACACAGTACGGCAGGGAGTGCTGGT
GCGGCAACAACGCCGACTACGACGTCTACGGAGAAGCAACGTGCGACATG
GCNNNN