EsuBft190_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft190_17a-0001
Unique NameEsuBft190_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:418989..420241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft190_17
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length125
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft190_17aEsuBft190_17aEctocarpus subulatus male Bft15bgeneScaffold_463 418989..420241 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_17a-0001-exonEsuBft190_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 418989..420241 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_17a-0001-exonagat-three_prime_utr-7018Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 418989..419793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_17a-0001-cdsEsuBft190_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 419794..419943 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_17a-0001-exonagat-five_prime_utr-4599Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 419944..420241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_17a-0001EsuBft190_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 419794..419943 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft190_17a-0001 ID=EsuBft190_17a-0001|Name=EsuBft190_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1253bp|location=Sequence derived from alignment at Scaffold_463:418989..420241- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCCATCTCATCTTTGTGCGCGGAGGCAGACGTCATCAGAAAGGTAGAC
GGGCACTATGTACATGTCCCTAGGTTTGCTAGAAGGCGCTGTACTGTCTC
AGTAACCTGGTTTTGCTATCAAAGGAGGAGGGGACAGGTAGGTGGTGACG
AGCTGATTGGGCTGGTTGACCCTTCGGCGCGAGAATTCTCAGACCAAGAA
CCCTAAGTGCAACGAGGGAGAACGCGAGGAACCGGCTGGGAAGGACAGCA
ACGAGAGCGTGTACGAAGCGAAGCGGGTCGAGCTTGGTCGTGCTAGGAAT
GGCCACAGCGGCACCGGAGCAGCGGAACCGGAGCAGCGGAACCGGAGCAG
CGGAACCGGAGCATGCGGATGGCATTGAACCGTGGCGCACGGACAAACAT
CTCTTGTGTTGTCAACTACTTTTCCGTTTTTTCCTGAATATACCGTAGGT
GTTTGGATGTGTGTGATGACGTCACTGGTTTTCTATAGAGACGCGGCAGA
GATGGCGCGGATAACCTGGGTGCCTTAATTGTGTACCTGCATCGTTGAAG
ACCCCTTCAATGTGGAACGATTCCTGGTCAGTGTCGATGTTTACACTGCT
GTGCCTAACATAGATGATCTGGATAGATTCGGGTGATCGTCAATTGCAAT
GATTGATGGCTTTGGTAGGGTGTTCTTCATTGTATGTCCACGAACTCATT
CTGACAGCACTTCAGACAGCAGCTGCATGCCCCGAGCTTGTGTACCATGC
GCCATGGCNTGTTTACACTGCTGTGCCTAACATAGATGATCTGGATAGAT
TCGGGTGATCGTCAATTGCAATGATTGATGGCTTTGGTAGGGTGTTCTTC
ATTGTATGTCCACGAACTCATTCTGACAGCACTTCAGACAGCAGCTGCAT
GCCCCGAGCTTGTGTACCATGCGCCATGGCGTTATTATTGTACAGACAGC
ACTTCAGACAGCAGTACGCTGTAGTCGACAAACATTCATTTTGGTTAAAT
GCGGGACAAGGGGGGTGATGCTGCTGCTGTAGTCGATTTGTAGTGTGTGG
GCGTGTAGTTCAGTTGTGAGCACGCAAACGTGCTGCAGGGATTGTAGGTG
TACCTCCTCGGGCTTGTGTACCCTTTTCTTCCTAATAGTGTGTGTGTTCT
TTAGATCTTCTGATGGCTCTGGCATTTTTGTAACCACGGACCGAGTCTTT
GCTAGATTTTGGGATGAGCAACTGACACGAGTTTAACGTGAAGAAAAACA
ACA
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protein sequence of EsuBft190_17a-0001

>EsuBft190_17 ID=EsuBft190_17|Name=EsuBft190_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MATAAPEQRNRSSGTGAAEPEHADGIEPWRTDKHLLCCQLLFRFFLNIP
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mRNA from alignment at Scaffold_463:418989..420241-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft190_17a-0001 ID=EsuBft190_17a-0001|Name=EsuBft190_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1253bp|location=Sequence derived from alignment at Scaffold_463:418989..420241- (Ectocarpus subulatus male Bft15b)
TGCCCATCTCATCTTTGTGCGCGGAGGCAGACGTCATCAGAAAGGTAGAC
GGGCACTATGTACATGTCCCTAGGTTTGCTAGAAGGCGCTGTACTGTCTC
AGTAACCTGGTTTTGCTATCAAAGGAGGAGGGGACAGGTAGGTGGTGACG
AGCTGATTGGGCTGGTTGACCCTTCGGCGCGAGAATTCTCAGACCAAGAA
CCCTAAGTGCAACGAGGGAGAACGCGAGGAACCGGCTGGGAAGGACAGCA
ACGAGAGCGTGTACGAAGCGAAGCGGGTCGAGCTTGGTCGTGCTAGGAAT
GGCCACAGCGGCACCGGAGCAGCGGAACCGGAGCAGCGGAACCGGAGCAG
CGGAACCGGAGCATGCGGATGGCATTGAACCGTGGCGCACGGACAAACAT
CTCTTGTGTTGTCAACTACTTTTCCGTTTTTTCCTGAATATACCGTAGGT
GTTTGGATGTGTGTGATGACGTCACTGGTTTTCTATAGAGACGCGGCAGA
GATGGCGCGGATAACCTGGGTGCCTTAATTGTGTACCTGCATCGTTGAAG
ACCCCTTCAATGTGGAACGATTCCTGGTCAGTGTCGATGTTTACACTGCT
GTGCCTAACATAGATGATCTGGATAGATTCGGGTGATCGTCAATTGCAAT
GATTGATGGCTTTGGTAGGGTGTTCTTCATTGTATGTCCACGAACTCATT
CTGACAGCACTTCAGACAGCAGCTGCATGCCCCGAGCTTGTGTACCATGC
GCCATGGCNTGTTTACACTGCTGTGCCTAACATAGATGATCTGGATAGAT
TCGGGTGATCGTCAATTGCAATGATTGATGGCTTTGGTAGGGTGTTCTTC
ATTGTATGTCCACGAACTCATTCTGACAGCACTTCAGACAGCAGCTGCAT
GCCCCGAGCTTGTGTACCATGCGCCATGGCGTTATTATTGTACAGACAGC
ACTTCAGACAGCAGTACGCTGTAGTCGACAAACATTCATTTTGGTTAAAT
GCGGGACAAGGGGGGTGATGCTGCTGCTGTAGTCGATTTGTAGTGTGTGG
GCGTGTAGTTCAGTTGTGAGCACGCAAACGTGCTGCAGGGATTGTAGGTG
TACCTCCTCGGGCTTGTGTACCCTTTTCTTCCTAATAGTGTGTGTGTTCT
TTAGATCTTCTGATGGCTCTGGCATTTTTGTAACCACGGACCGAGTCTTT
GCTAGATTTTGGGATGAGCAACTGACACGAGTTTAACGTGAAGAAAAACA
ACA
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Coding sequence (CDS) from alignment at Scaffold_463:418989..420241-

>EsuBft190_17a-0001 ID=EsuBft190_17a-0001|Name=EsuBft190_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_463:418989..420241- (Ectocarpus subulatus male Bft15b)
ATGGCCACAGCGGCACCGGAGCAGCGGAACCGGAGCAGCGGAACCGGAGC
AGCGGAACCGGAGCATGCGGATGGCATTGAACCGTGGCGCACGGACAAAC
ATCTCTTGTGTTGTCAACTACTTTTCCGTTTTTTCCTGAATATACCGTAG
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