EsuBft190_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft190_16a-0001
Unique NameEsuBft190_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:397223..399673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6669.EFX68856
ProteomeIdEsuBft190_16
Protein domainsIPR006600
Protein domainsCoil
Protein domainsPTHR19303
Protein domainsIPR009057
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Notetigger transposable element-derived protein 6 os:homo sapiens gn:tigd6 pe:2 sv:2 [Automatic annotation]
Nb exon5
Max annot lvl33208|Metazoa
Length1851
Hectar predicted targeting categoryother localisation
Evalue3.72e-34
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda
Date last modified2016-06-14
Date creation2016-06-14
DescriptionJerky protein homolog-like
COG categoryBD
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft190_16aEsuBft190_16aEctocarpus subulatus male Bft15bgeneScaffold_463 397223..399673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_16a-0001EsuBft190_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 397223..399649 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_16a-0001-exonagat-exon-18583Ectocarpus subulatus male Bft15bexonScaffold_463 397223..397864 +
EsuBft190_16a-0001-exonagat-exon-18584Ectocarpus subulatus male Bft15bexonScaffold_463 398021..398446 +
EsuBft190_16a-0001-exonagat-exon-18585Ectocarpus subulatus male Bft15bexonScaffold_463 398567..398761 +
EsuBft190_16a-0001-exonagat-exon-18582Ectocarpus subulatus male Bft15bexonScaffold_463 398958..399516 +
EsuBft190_16a-0001-exonEsuBft190_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 399645..399673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_16a-0001-cdsEsuBft190_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 397223..397864 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_16a-0001-exonagat-three_prime_utr-7017Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 399650..399673 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft190_16a-0001 ID=EsuBft190_16a-0001|Name=EsuBft190_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1851bp|location=Sequence derived from alignment at Scaffold_463:397223..399673+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACAATTCCCTCGTCTCTTGCAAAATTTGCCGCGCAGGACGAGGCA
ACTGGCTGCGGGCAAAGAGTCAGAAACTGCAAGGAAGGGGAAACGGATTC
AACGCACCACGGGTGGGGGCGGCGCAGGTGCCGCGGGGCTAGGCGGCGGA
GGCGCTGCGGGGGGGGGCGGCGGAGATGCCACGTGGGGAGGCGGCGGAGG
TGCCGCGGGGGACGGCACAGGTAGTGTCGCCAAAGAAGTCCGGGTGTCCA
AGCCCGGACGGAACACCGGCAAAAACAAGTTATCGATGACGCAGCGATTG
CGGATTGTCAAGGAGGTCCAGGGGGGGACTAAGAGGAGCATGGTTGCTGC
AAAGTGGAGCGTCGGTACTTGGTACACGAGCAAGTTCATGAACCCGGAGA
AAATCGCTGAGCTCAAGAAAATCCGCGACATGGAGCTCAATCAGGACGCC
CTTCGCGCCCCGAGGCCGGTACACGACGAAGTGGAAGAGAAACTACGCAA
GTGGATCAAGATCGCACGAGCACGCTTTGACGTAAGTACACATTTTGCAT
TAGTCATGTGTTGGTCAGGATACAACTTGGTTGCCTATACGCCTATAACC
TTCCGCCCCTACACCTCCTCCCACTCTCGACCAAGCTGCTGGGCCCAGGC
CTTGAAGATCGCGGCGCAGATGGGGAAGACCAACTTCAAGGCGACCAACG
GCTGGCTACATCGCTTCCTGAAACGCTACAGCTTCACTCACGTCCAATTG
CACGGAGAAGCTGGCGACGTGGACAAGCAGAAAGTGGCAGAGGAGTTCGA
GAGGATTCGTGAGCAGCTGCAGGAGTTCGACGTCGAGTTCATTTGTAACA
TGGACGAGACGGGACTTTTCTTCCGCTGCTTCCCGAGAGGTACACGCGTC
ACGAGGGGGGAGGCCGCCGCCGGCGTCAACAGCAAAACCGCGCGGGGTTC
GAAGGCCATGAATGCCAAGGATCGGTGCACGGTGGTCGCCTGCTGCAATA
CGACCGGGTCTCAGATGGCGCCGTTGGCCGTCATCAGCACGTCGAAAAAA
CCGATGGTTTTCCGCCAGGTGGCCTTCTTGTGGGACAACTGCCCCGGCCA
CAAGATCAAAAGCAACGACCCGCATATCGTCATCAACTTCTTGCCTCCGT
ACGTCAATTCTGTCTACCAGCCCATGGACATGAGCATCCTGTTTGTACTC
AAGTGCCAGTACAAGACCGAGATGGTGGCAAGGCTGGCAGACCTCATGGA
GGACTGGGACACCGCGACAATGCTGGACGTCACGGAGATCTGTTCCCAGA
AGTGGCGTAGCTTCGACGTTCAGACGGTCATCAGGTGCTGGCTCAAGGCT
GGCATCCTTCCCAGGGAGCACTGCAACGTTCTCAAGGGCATGGACACGCG
GCTTGACCGAGAGGACAAGGACAACGCGGCAATCATCGATGGCCTTTGTG
ACATGGTCTCAAAAATGTCGATGCCAGCTAGCGTAACGGACCATGGGTCC
ATGCCGCGAGTGTTGACGGACAATTTGTTTGTCGAGACGGGCGCAGACCT
CACAGAGCAGGAAGTCCGAACGGCGGTCAAGACGTGGCTTTCGGTAGAGG
ACGACCCCGAGGTGTTCGAAGAGGCGGTGGAGTTGGAACTGCAGGCAGTA
GAGAGGGATCTCGCCGGCTTAGAAATGGACGACGACGTATCGAGCGAAGA
GGGCGACGGCGACGGCAGGCCGGAGTCGTGCATATCCTCGTCTCTCACCG
AGGGCAAGGTTGTCTCTCGCTTGGAGGACGTTCGATCCTATATGTACGCG
AAGGGAAGGGGTGGCGAGTACCGGTAGCTTGGTCTCCGCCGGGACAGTTA
C
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protein sequence of EsuBft190_16a-0001

>EsuBft190_16 ID=EsuBft190_16|Name=EsuBft190_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=608bp
MSQFPRLLQNLPRRTRQLAAGKESETARKGKRIQRTTGGGGAGAAGLGGG
GAAGGGGGDATWGGGGGAAGDGTGSVAKEVRVSKPGRNTGKNKLSMTQRL
RIVKEVQGGTKRSMVAAKWSVGTWYTSKFMNPEKIAELKKIRDMELNQDA
LRAPRPVHDEVEEKLRKWIKIARARFDVSTHFALVMCWSGYNLVAYTPIT
FRPYTSSHSRPSCWAQALKIAAQMGKTNFKATNGWLHRFLKRYSFTHVQL
HGEAGDVDKQKVAEEFERIREQLQEFDVEFICNMDETGLFFRCFPRGTRV
TRGEAAAGVNSKTARGSKAMNAKDRCTVVACCNTTGSQMAPLAVISTSKK
PMVFRQVAFLWDNCPGHKIKSNDPHIVINFLPPYVNSVYQPMDMSILFVL
KCQYKTEMVARLADLMEDWDTATMLDVTEICSQKWRSFDVQTVIRCWLKA
GILPREHCNVLKGMDTRLDREDKDNAAIIDGLCDMVSKMSMPASVTDHGS
MPRVLTDNLFVETGADLTEQEVRTAVKTWLSVEDDPEVFEEAVELELQAV
ERDLAGLEMDDDVSSEEGDGDGRPESCISSSLTEGKVVSRLEDVRSYMYA
KGRGGEYR
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mRNA from alignment at Scaffold_463:397223..399673+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft190_16a-0001 ID=EsuBft190_16a-0001|Name=EsuBft190_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2451bp|location=Sequence derived from alignment at Scaffold_463:397223..399673+ (Ectocarpus subulatus male Bft15b)
ATGTCACAATTCCCTCGTCTCTTGCAAAATTTGCCGCGCAGGACGAGGCA
ACTGGCTGCGGGCAAAGAGTCAGAAACTGCAAGGAAGGGGAAACGGATTC
AACGCACCACGGGTGGGGGCGGCGCAGGTGCCGCGGGGCTAGGCGGCGGA
GGCGCTGCGGGGGGGGGCGGCGGAGATGCCACGTGGGGAGGCGGCGGAGG
TGCCGCGGGGGACGGCACAGGTAGTGTCGCCAAAGAAGTCCGGGTGTCCA
AGCCCGGACGGAACACCGGCAAAAACAAGTTATCGATGACGCAGCGATTG
CGGATTGTCAAGGAGGTCCAGGGGGGGACTAAGAGGAGCATGGTTGCTGC
AAAGTGGAGCGTCGGTACTTGGTACACGAGCAAGTTCATGAACCCGGAGA
AAATCGCTGAGCTCAAGAAAATCCGCGACATGGAGCTCAATCAGGACGCC
CTTCGCGCCCCGAGGCCGGTACACGACGAAGTGGAAGAGAAACTACGCAA
GTGGATCAAGATCGCACGAGCACGCTTTGACGTAAGTACACATTTTGCAT
TAGTCATGTGTTGGTCAGGATACAACTTGGTTGCCTATACGCCTATAACC
TTCCGCCCCTACACCTCCTCCCACTCTCGACCAAGCTGCTGGGTTGGGGA
TTCGACAAGCTCTAGCCCACCTGTTTCAAGCTGGCTGACCGAACGCACAA
TCAATTCAAGGGAGAGTTGATCGAAACCATGTCGCTGCTGTTTTTGTTTA
TGTCTTGCCCGACGCAGGCAACCCGGCGTGAGTGGTTCGATGATCCAGGC
CCAGGCCTTGAAGATCGCGGCGCAGATGGGGAAGACCAACTTCAAGGCGA
CCAACGGCTGGCTACATCGCTTCCTGAAACGCTACAGCTTCACTCACGTC
CAATTGCACGGAGAAGCTGGCGACGTGGACAAGCAGAAAGTGGCAGAGGA
GTTCGAGAGGATTCGTGAGCAGCTGCAGGAGTTCGACGTCGAGTTCATTT
GTAACATGGACGAGACGGGACTTTTCTTCCGCTGCTTCCCGAGAGGTACA
CGCGTCACGAGGGGGGAGGCCGCCGCCGGCGTCAACAGCAAAACCGCGCG
GGGTTCGAAGGCCATGAATGCCAAGGATCGGTGCACGGTGGTCGCCTGCT
GCAATACGACCGGGTCTCAGATGGCGCCGTTGGCCGTCATCAGCACGTCG
AAAAAACCGATGGTTTTCCGCCAGGTCCGCAAACCGCCATGCCCCTACTT
CGCCCAGGAGAGTGCCTGGCTCGACATAGCCATTTGCCAGCGGTGGTTTG
ACGCAGTCTTTGTCCCCTTTGTATAAGGCAAGACCTCCAAGAAGGTGGCC
TTCTTGTGGGACAACTGCCCCGGCCACAAGATCAAAAGCAACGACCCGCA
TATCGTCATCAACTTCTTGCCTCCGTACGTCAATTCTGTCTACCAGCCCA
TGGACATGAGCATCCTGTTTGTACTCAAGTGCCAGTACAAGACCGAGATG
GTGGCAAGGCTGGCAGACCTCATGGAGGACTGGGACACCGTCCGTGCACG
AAAAAGTGAATCAAAAACAACAATGTAGAGGCGCTTCTTTGTTACCGTCG
TCGCAGGTCTTGCGAAGGCTCTGAAAATGGTCTTCTTGCAACCTTTTCGT
CGAGCTGGTTTCAACATTAGCCCTTTCATCCGTCCCTGAGTTTCGTTTCG
GCAGAGGGTGCCGCGGCCTCAGCGATGCAGGACAGGCGACAATGCTGGAC
GTCACGGAGATCTGTTCCCAGAAGTGGCGTAGCTTCGACGTTCAGACGGT
CATCAGGTGCTGGCTCAAGGCTGGCATCCTTCCCAGGGAGCACTGCAACG
TTCTCAAGGGCATGGACACGCGGCTTGACCGAGAGGACAAGGACAACGCG
GCAATCATCGATGGCCTTTGTGACATGGTCTCAAAAATGTCGATGCCAGC
TAGCGTAACGGACCATGGGTCCATGCCGCGAGTGTTGACGGACAATTTGT
TTGTCGAGACGGGCGCAGACCTCACAGAGCAGGAAGTCCGAACGGCGGTC
AAGACGTGGCTTTCGGTAGAGGACGACCCCGAGGTGTTCGAAGAGGCGGT
GGAGTTGGAACTGCAGGCAGTAGAGAGGGATCTCGCCGGCTTAGAAATGG
ACGACGACGTATCGAGCGAAGAGGGCGACGGCGACGGCAGGCCGGAGTCG
TGCATATCCTCGTCTCTCACCGAGGGCAAGGTTGTCTCTCGCTTGGAGGA
CGTTCGATCCTATATGTACGCGAAGGGAAGGGGTGGCGAGTACCGTGAAA
CGCAGTACCTTATTTCGAAGACCGTTCATTATTTTACTCATGAAACTGAA
CAGAGCGGTAGAGCCAAGCGGCGGGGGGAGGTGAGGGAACTCTTCGCGAT
ATGTGGAGGGAAAAGCCGTCAGGGTAGCTTGGTCTCCGCCGGGACAGTTA
C
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Coding sequence (CDS) from alignment at Scaffold_463:397223..399673+

>EsuBft190_16a-0001 ID=EsuBft190_16a-0001|Name=EsuBft190_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1827bp|location=Sequence derived from alignment at Scaffold_463:397223..399673+ (Ectocarpus subulatus male Bft15b)
ATGTCACAATTCCCTCGTCTCTTGCAAAATTTGCCGCGCAGGACGAGGCA
ACTGGCTGCGGGCAAAGAGTCAGAAACTGCAAGGAAGGGGAAACGGATTC
AACGCACCACGGGTGGGGGCGGCGCAGGTGCCGCGGGGCTAGGCGGCGGA
GGCGCTGCGGGGGGGGGCGGCGGAGATGCCACGTGGGGAGGCGGCGGAGG
TGCCGCGGGGGACGGCACAGGTAGTGTCGCCAAAGAAGTCCGGGTGTCCA
AGCCCGGACGGAACACCGGCAAAAACAAGTTATCGATGACGCAGCGATTG
CGGATTGTCAAGGAGGTCCAGGGGGGGACTAAGAGGAGCATGGTTGCTGC
AAAGTGGAGCGTCGGTACTTGGTACACGAGCAAGTTCATGAACCCGGAGA
AAATCGCTGAGCTCAAGAAAATCCGCGACATGGAGCTCAATCAGGACGCC
CTTCGCGCCCCGAGGCCGGTACACGACGAAGTGGAAGAGAAACTACGCAA
GTGGATCAAGATCGCACGAGCACGCTTTGACGTAAGTACACATTTTGCAT
TAGTCATGTGTTGGTCAGGATACAACTTGGTTGCCTATACGCCTATAACC
TTCCGCCCCTACACCTCCTCCCACTCTCGACCAAGCTGCTGGGCCCAGGC
CTTGAAGATCGCGGCGCAGATGGGGAAGACCAACTTCAAGGCGACCAACG
GCTGGCTACATCGCTTCCTGAAACGCTACAGCTTCACTCACGTCCAATTG
CACGGAGAAGCTGGCGACGTGGACAAGCAGAAAGTGGCAGAGGAGTTCGA
GAGGATTCGTGAGCAGCTGCAGGAGTTCGACGTCGAGTTCATTTGTAACA
TGGACGAGACGGGACTTTTCTTCCGCTGCTTCCCGAGAGGTACACGCGTC
ACGAGGGGGGAGGCCGCCGCCGGCGTCAACAGCAAAACCGCGCGGGGTTC
GAAGGCCATGAATGCCAAGGATCGGTGCACGGTGGTCGCCTGCTGCAATA
CGACCGGGTCTCAGATGGCGCCGTTGGCCGTCATCAGCACGTCGAAAAAA
CCGATGGTTTTCCGCCAGGTGGCCTTCTTGTGGGACAACTGCCCCGGCCA
CAAGATCAAAAGCAACGACCCGCATATCGTCATCAACTTCTTGCCTCCGT
ACGTCAATTCTGTCTACCAGCCCATGGACATGAGCATCCTGTTTGTACTC
AAGTGCCAGTACAAGACCGAGATGGTGGCAAGGCTGGCAGACCTCATGGA
GGACTGGGACACCGCGACAATGCTGGACGTCACGGAGATCTGTTCCCAGA
AGTGGCGTAGCTTCGACGTTCAGACGGTCATCAGGTGCTGGCTCAAGGCT
GGCATCCTTCCCAGGGAGCACTGCAACGTTCTCAAGGGCATGGACACGCG
GCTTGACCGAGAGGACAAGGACAACGCGGCAATCATCGATGGCCTTTGTG
ACATGGTCTCAAAAATGTCGATGCCAGCTAGCGTAACGGACCATGGGTCC
ATGCCGCGAGTGTTGACGGACAATTTGTTTGTCGAGACGGGCGCAGACCT
CACAGAGCAGGAAGTCCGAACGGCGGTCAAGACGTGGCTTTCGGTAGAGG
ACGACCCCGAGGTGTTCGAAGAGGCGGTGGAGTTGGAACTGCAGGCAGTA
GAGAGGGATCTCGCCGGCTTAGAAATGGACGACGACGTATCGAGCGAAGA
GGGCGACGGCGACGGCAGGCCGGAGTCGTGCATATCCTCGTCTCTCACCG
AGGGCAAGGTTGTCTCTCGCTTGGAGGACGTTCGATCCTATATGTACGCG
AAGGGAAGGGGTGGCGAGTACCGGTAG
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