EsuBft190_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft190_11a-0001
Unique NameEsuBft190_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:344895..349442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog283942.IL1915
ProteomeIdEsuBft190_11
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR012340
Protein domainsIPR000266
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Note30s ribosomal protein s17 os:idiomarina loihiensis (strain atcc baa-735 dsm 15497 l2-tr) gn:rps [Automatic annotation]
Nb exon4
Max annot lvl1236|Gammaproteobacteria
Length1307
Hectar predicted targeting categorymitochondrion
Evalue4.24e-12
EggNOG OGsCOG0186@1|root,COG0186@2|Bacteria,1MZIK@1224|Proteobacteria,1S8SS@1236|Gammaproteobacteria,2QGC7@267893|Idiomarinaceae
Ec32 ortholog descriptionRibosomal protein S17
Ec32 orthologEc-02_006320.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred namerpsQ
KEGG koko:K02961
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046677,GO:0050896,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
DescriptionOne of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Cross References
External references for this mRNA
DatabaseAccession
GO0006412
GO0003735
GO0005840
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft190_11aEsuBft190_11aEctocarpus subulatus male Bft15bgeneScaffold_463 344895..349442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_11a-0001EsuBft190_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 345455..349352 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_11a-0001-exonagat-exon-18559Ectocarpus subulatus male Bft15bexonScaffold_463 344895..345559 -
EsuBft190_11a-0001-exonagat-exon-18557Ectocarpus subulatus male Bft15bexonScaffold_463 346148..346243 -
EsuBft190_11a-0001-exonEsuBft190_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 346565..346645 -
EsuBft190_11a-0001-exonagat-exon-18558Ectocarpus subulatus male Bft15bexonScaffold_463 348978..349442 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_11a-0001-exonagat-three_prime_utr-7008Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 344895..345454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_11a-0001-cdsEsuBft190_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 345455..345559 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_11a-0001-exonagat-five_prime_utr-4594Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 349353..349442 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft190_11a-0001 ID=EsuBft190_11a-0001|Name=EsuBft190_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1307bp|location=Sequence derived from alignment at Scaffold_463:344895..349442- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAGCAGGCACTGCAGCAGGCTGCAGGGTGCCAGACTGCAGAGAGACATC
GAGAGGGAGGCCCACACGTGTGTAACGGACGAAGGAGACGATGTTCCGAA
CGGTGCTGGCGACGATTGTCCCAAGGGCAACGGCGGCAAGCAGGTCGCGA
GCAGCCTCCGGTCGCTGCGCACCGTTTACGGCTTTCGCCACCAGACGCCC
TTTCCCCTCCTCTCCTTCTCCTCAAGGAGGGCAGTCGCTACCTCTCGACT
GCGCTGCCGCTGTTTCAATTAGGTCTGTTCCGAGGAGATGCTCTTGGCGG
GAAATGTCCTCGGCCAGCGCGCACGTTGCCGCACCGGGGGGTGGCGAAAT
CGCTATGCAGGGAGAAGGGGGTGGGGAGGGACAGCAGGGGGAAATGGGCA
GCAGCGGGAGAGATGCTCGGGATGCGGTGACGGGCGAGGGGATTTGGGTG
GACGAAGAAGATGAGCCGCTAGATCTGGAGAAACCAAAGAAGGTCCAAAA
GTTCTGCGGCAAGGTTATCTCGGACAACATGGACAAGACCATAAAGGTGG
CTGTCCCATACTGGTACTACGTCAGGCGACTCGGCAAGAGAATCATCCGG
TACAGCAAGATGATGGCCCATGATGAGGAGAACAGCGCAAACGTCGGCGA
CACAGTGATCCTGGTGGATTGCCAACAGAAGAGCAAGAGAAAAAAACACA
CCCTCTTGAAGATCGTTCGCAAGCTGCCGAGGCTTGACGACATCTGATGG
CAACGAAGGAAAAATTGTTTCAAAAGCCGTCTGGTGGGCGAGAGTGGACG
TCATGGTATCAATGGCCATCATGGTTCGTCTCCAACTTTTGCACAGGGCG
CTGCTGAATATCCCAAGGGTAGTAGCAGAGGACGTTCGCCGCGATACTCC
TGCCGTAGACTAAATACCAAATAAGCGTTGCTCCCTGGTACCGCGGCATG
CAATGGTTTGACATCATTTCAGCCGCCAGGCTTTCAATGAGCAAGCTAAG
AGCTTCCAACGGTCGGGCAAGATAACAGCTTCGACAGCTTTGACAGCTTT
GACGCCGGCACGAAGTTGCGGGGCGTGGGTGAATCAGGTGCATGGAACTC
TAAGCAATGGACTCCTTGTAGCAAATTCGAGAGCCCGAAGAAGAAGACAA
GCTGCTCGACACGGTAGAAAGACTTCCAAGTGGACACGGGCCCTCTCTGC
CCTGGGTGATGTTGACTTGCACGGGAAATGTTTCGCGAATATGCAAGGTC
GTCAGCGGCGTTCGCCGATCAATATCAGACTATAGGCGCCATCCGCAACT
GACCGTC
back to top

protein sequence of EsuBft190_11a-0001

>EsuBft190_11 ID=EsuBft190_11|Name=EsuBft190_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MFRTVLATIVPRATAASRSRAASGRCAPFTAFATRRPFPSSPSPQGGQSL
PLDCAAAVSIRSVPRRCSWREMSSASAHVAAPGGGEIAMQGEGGGEGQQG
EMGSSGRDARDAVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKT
IKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKR
KKHTLLKIVRKLPRLDDI
back to top

mRNA from alignment at Scaffold_463:344895..349442-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft190_11a-0001 ID=EsuBft190_11a-0001|Name=EsuBft190_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4548bp|location=Sequence derived from alignment at Scaffold_463:344895..349442- (Ectocarpus subulatus male Bft15b)
GTAGCAGGCACTGCAGCAGGCTGCAGGGTGCCAGACTGCAGAGAGACATC
GAGAGGGAGGCCCACACGTGTGTAACGGACGAAGGAGACGATGTTCCGAA
CGGTGCTGGCGACGATTGTCCCAAGGGCAACGGCGGCAAGCAGGTCGCGA
GCAGCCTCCGGTCGCTGCGCACCGTTTACGGCTTTCGCCACCAGACGCCC
TTTCCCCTCCTCTCCTTCTCCTCAAGGAGGGCAGTCGCTACCTCTCGACT
GCGCTGCCGCTGTTTCAATTAGGTCTGTTCCGAGGAGATGCTCTTGGCGG
GAAATGTCCTCGGCCAGCGCGCACGTTGCCGCACCGGGGGGTGGCGAAAT
CGCTATGCAGGGAGAAGGGGGTGGGGAGGGACAGCAGGGGGAAATGGGCA
GCAGCGGGAGAGATGCTCGGGATGCGGTGACGGGCGAGGGGATTTGGGTG
GACGAAGAAGATGAGGTATGTGCGTTTGTGTTCGTGTATGATCTTTGTCT
TGTAGCGTGGAGACCTATCGTGCCGGCAACATCGGTCCCGACGCAATGCT
CACCAATATATTTGATTGCACATGAATATTGGTTGTACACACATAGGCAT
TCTCGGTAGGTCAACCCGTTCAACAGCAGTATAGGCTAAAAGGTGCATTT
CATGCACGTTACAGCAGTATCGGCAAAGCAATGGTGCAGCAGCAGTGAGC
CCTCATCAACACTGGTTGACCAACGCCGGTGGCGCTGCATAGCGCCCGTG
AACTTGCTGGGCACAAACTGAATGAGATAGTCTTGCCGTCGATTCGCCGG
GCACATACCGGCGTTAGTTATTGAGGGCCCACTACAGCAGCAGTATATTG
TCGCTATACATGCAGTACTGGTGAAAGTAGAAGACACAAGACACCCAACG
TCGGAGAGAGCACACGACTGAGATGAGATGCAACTCAAGAAGACCCACAG
TATGCATAGAGCTTTTCTTGGCACCACATAGATGAGTTCCTATGTGCACG
TAAAATGTGTCGCGTGCATAACTCACCCACATAAAAAACCACACCCCCCA
CAGAAGACGACACCCCGATGATAATGTTGGGCATATCTGACAAACGATCG
ATTTATCACCTGGGCGACACAAGATAACACACCCCTTGAGGTTACGCCGC
ATAAATTCGTGGGGCCCCTCCTTCTATCACCGGGGTGATACAGTATCTGC
CCCAAGGGCATGTGGGCATTGCACACACACACATCTGCCGGTCACCCCGG
TGGTCTAGTGGGTAGCCTCGCAGCCTGCCAAGGGCCAGGGCATGGCTTCG
AGTCCCGACAGAGTGAGTTTTTGTTCGCTTATAAAATCCTGGTCTCCGTT
GGAAGCGACGCGCTGCAACGCTCGTTGTTAGTAAATCATAATCGCCTTCG
TAGGTCGCGAGGGAAGGGATTGCTANGGTCACCCCGGTGGTCTAGTGGGT
AGCCTCGCAGCCTGCCAAGGGCCAGGGCATGGCTTCGAGTCCCGACAGAG
TGAGTTTTTGTTCGCTTATAAAATCCTGGTCTCCGTTGGAAGCGACGCGC
TGCAACGCTCGTTGTTAGTAAATCATAATCGCCTTCGTAGGTCGCGAGGG
AAGGGATTGCTATACCCTTCTCGCGATAAAAAAATCTCAGGCAGGAACCG
CAGGAGGGGGTCCAACCCCCCCCTCCTATGTGACCCCGGTTGGGTCATCT
AGCTGGTAGAAGTGGAGGATAGGGGCCAGAGGGGCAGACGACAGAGTCCA
ATGATGGGAGAAAAACAAACAAATGAAAAAAACATCTGCGTAACTCTCTT
TTGGTCGTACCCAATAGCAAGGTATGCAGCAGCCTACTTTTTTGTGTGAC
GGGGCAGGACGGTGGGCGCACTCTGTGGTCACCGATGTCATGTGCTCAGG
AGTGTTGTCACCGCCGTTGAGCTCCTTTGTTTTTACAACATTCCACATAC
CCACGAGTCATGAAGTGTTCGTACAGGCATTGCCATCACACACCCGCAAT
ACCACACCCCTTGAAGTGTGCGGCAGCAGCGGTTCAACTCTACAAGCAGT
GTTACCTTTTTTATGACACACCCTCATTATCACGCCCCCAAACACACCCT
GTGGGTATTCGGACGTGCTATCACACACCCTGGTTCATCACACCCTCTTT
GGGGCCCCCTGCGAGCTGCGCTTTATCACCCGGGCTACGTAAGATACCAC
ACACCCCACAGGATCCACACCCGGTGATATTATTTTTGAAGCCCAAAAAA
AATTCGCCGGGGTGTGTTATTTTGAGTCGTTTACGGTAGGTATCCCGACG
GGGGCACGAAGCACGAGGCACAAGGTGCTCCCTCCCCCCGCTCCTCGTGT
ATTGAGTCACATATGCCAGCTCGAAACATGCCGTTGGTCTAATAATACGG
TATCTCAGATTCAGCGTTCGTTTTACTGCTGTACGTCTCTGATACGGCTG
TCGTTGTGTATGTGAATGCGACCAATCGATCAATCCCCGCCGCGTTCATT
CCCAAAAGGACCAAAGGAGAGGCGTTCGTTGCCAGGTACTGCACAACTGT
GCATGTGGCTTGAACAGTTCCTTTCATCTTTCCGCGCTGCCGCATGCTCG
CCCGATCGGGTAGACCACGACTTGTTCACTGTTCACTTGTACAGTGCGTC
TGCAGCGCGATCCGTGCCAATCATTCCTAACAGTCCCACGGTTACCCCCC
CCCTGCCGGCGTGCTTGTTCCCATTTCCCGTGTGCCCCCTCGCCGTATCT
CCTTTTGATGTGTCATGCGGTGGGATGCAATATCACATCAACAATAGCCG
CTAGATCTGGAGAAACCAAAGAAGGTCCAAAAGTTCTGCGGCAAGGTTAT
CTCGGACAACATGGACAAGACCATAAAGGTGGCTTTGCCATTTCCCTGTA
TCTGCGTAGTAAACTTCTTGATCTCGCACCGTCTGTTGTATCCGCTGTAT
CGCCCCCAGCTCTCTCTCTCTCATGGAAATGTGGAGTGTTTTGCGGCTTT
TGCTTCAGACTGCTGATATGCAGCACATGTGCCGTGCTTGACCTGGGGCA
ATGTGTAGCACGGTGGAAATAACTGCGGGTGTAACAGCTGTGTAATCCCT
TCAACCGTACTGTCGGCGCGCATTTTGAGCGTTCTTCATCGATGGATGGT
GGCTGGTAATGACGCAGTGACCATCCACAATGATGACGCGATGATGCAGG
TGGCTGTCCCATACTGGTACTACGTCAGGCGACTCGGCAAGAGAATCATC
CGGTACAGCAAGATGATGGCCCATGATGAGGAGAACAGCGCAAACGTGGG
TAACGATCGTTTTACCGATATTTTCAAACCTTGTCGCTCTCTTGTTGTCG
CGTTTTTTGTACCGTTTCCTTTTATATCGGCCTTCCGCCAAAGGCAGCAA
GGAGGTTCTCTTACGCTTGGCTTGGTATATAATTTTTTTTTTTTATCAGC
AACTACTGCGGCGTCTCGCTTGCAGCCTTGGTTTTTGTTGATTGCGGAGC
CAAAGGACAAAGTGTCACCAATGGGTGGTGCAAGATGTGAAAAACATGGG
TGCCAGCAAACCATGCGCGGTGCCCACCCCATGTTTGACGGACATATGAT
TTTTTGGGCAGTTGACTTGACACGTGATCGACCATCCCAGTTACATGTGA
CCTTCCCCAAGCTCGACCAGCTGGCTCCCAGCTGTGGCGTTTTCCAAGCT
CCACAGGCCACACAGCTGACTTGTTTAGATTCGAAGAACCCGGCGAACCG
CATCGAACCAGGAAGAACAACATGAATCTGTACACAGGGGTCTTTGTCGC
CACTCCTTGCCACGTAAGCAATGGAGTAACACTCCGGGCTGATGGTGTCG
ATACCAACGTTTCGTGCGGCTTCTCTGGTGCAGGTCGGCGACACAGTGAT
CCTGGTGGATTGCCAACAGAAGAGCAAGAGAAAAAAACACACCCTCTTGA
AGATCGTTCGCAAGCTGCCGAGGCTTGACGACATCTGATGGCAACGAAGG
AAAAATTGTTTCAAAAGCCGTCTGGTGGGCGAGAGTGGACGTCATGGTAT
CAATGGCCATCATGGTTCGTCTCCAACTTTTGCACAGGGCGCTGCTGAAT
ATCCCAAGGGTAGTAGCAGAGGACGTTCGCCGCGATACTCCTGCCGTAGA
CTAAATACCAAATAAGCGTTGCTCCCTGGTACCGCGGCATGCAATGGTTT
GACATCATTTCAGCCGCCAGGCTTTCAATGAGCAAGCTAAGAGCTTCCAA
CGGTCGGGCAAGATAACAGCTTCGACAGCTTTGACAGCTTTGACGCCGGC
ACGAAGTTGCGGGGCGTGGGTGAATCAGGTGCATGGAACTCTAAGCAATG
GACTCCTTGTAGCAAATTCGAGAGCCCGAAGAAGAAGACAAGCTGCTCGA
CACGGTAGAAAGACTTCCAAGTGGACACGGGCCCTCTCTGCCCTGGGTGA
TGTTGACTTGCACGGGAAATGTTTCGCGAATATGCAAGGTCGTCAGCGGC
GTTCGCCGATCAATATCAGACTATAGGCGCCATCCGCAACTGACCGTC
back to top

Coding sequence (CDS) from alignment at Scaffold_463:344895..349442-

>EsuBft190_11a-0001 ID=EsuBft190_11a-0001|Name=EsuBft190_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_463:344895..349442- (Ectocarpus subulatus male Bft15b)
ATGTTCCGAACGGTGCTGGCGACGATTGTCCCAAGGGCAACGGCGGCAAG
CAGGTCGCGAGCAGCCTCCGGTCGCTGCGCACCGTTTACGGCTTTCGCCA
CCAGACGCCCTTTCCCCTCCTCTCCTTCTCCTCAAGGAGGGCAGTCGCTA
CCTCTCGACTGCGCTGCCGCTGTTTCAATTAGGTCTGTTCCGAGGAGATG
CTCTTGGCGGGAAATGTCCTCGGCCAGCGCGCACGTTGCCGCACCGGGGG
GTGGCGAAATCGCTATGCAGGGAGAAGGGGGTGGGGAGGGACAGCAGGGG
GAAATGGGCAGCAGCGGGAGAGATGCTCGGGATGCGGTGACGGGCGAGGG
GATTTGGGTGGACGAAGAAGATGAGCCGCTAGATCTGGAGAAACCAAAGA
AGGTCCAAAAGTTCTGCGGCAAGGTTATCTCGGACAACATGGACAAGACC
ATAAAGGTGGCTGTCCCATACTGGTACTACGTCAGGCGACTCGGCAAGAG
AATCATCCGGTACAGCAAGATGATGGCCCATGATGAGGAGAACAGCGCAA
ACGTCGGCGACACAGTGATCCTGGTGGATTGCCAACAGAAGAGCAAGAGA
AAAAAACACACCCTCTTGAAGATCGTTCGCAAGCTGCCGAGGCTTGACGA
CATCTGA
back to top