EsuBft190_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft190_10a-0001
Unique NameEsuBft190_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:338904..343890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZ54
ProteomeIdEsuBft190_10
Protein domainsPTHR23029
Protein domainsIPR029033
Protein domainsIPR001345
Protein domainsIPR013078
Ownerapollo_admin@sb-roscoff.fr
Notephosphoglycerate mutase-like protein at74h os:arabidopsis thaliana gn:at1g08940 pe:3 sv:2 [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length1667
Hectar predicted targeting categoryother localisation
Evalue2.8e-187
EggNOG OGs2CMFW@1|root,2QQ8J@2759|Eukaryota
Ec32 ortholog descriptionHistidine phosphatase superfamily
Ec32 orthologEc-02_006330.1
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0003674,GO:0003824,GO:0003993,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006793,GO:0006796,GO:0006810,GO:0006869,GO:0008150,GO:0008152,GO:0009987,GO:0010876,GO:0015850,GO:0015918,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0032365,GO:0032366,GO:0033036,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0071702
DescriptionHistidine phosphatase superfamily (branch 1)
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0071702
GO0033036
GO0044765
GO0044237
GO0016853
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft190_10aEsuBft190_10aEctocarpus subulatus male Bft15bgeneScaffold_463 338904..343890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_10a-0001EsuBft190_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 338941..343199 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_10a-0001-exonagat-exon-18555Ectocarpus subulatus male Bft15bexonScaffold_463 338904..339009 +
EsuBft190_10a-0001-exonagat-exon-18553Ectocarpus subulatus male Bft15bexonScaffold_463 339739..339843 +
EsuBft190_10a-0001-exonagat-exon-18550Ectocarpus subulatus male Bft15bexonScaffold_463 340155..340298 +
EsuBft190_10a-0001-exonagat-exon-18551Ectocarpus subulatus male Bft15bexonScaffold_463 341051..341208 +
EsuBft190_10a-0001-exonagat-exon-18552Ectocarpus subulatus male Bft15bexonScaffold_463 341652..341796 +
EsuBft190_10a-0001-exonagat-exon-18556Ectocarpus subulatus male Bft15bexonScaffold_463 342145..342249 +
EsuBft190_10a-0001-exonEsuBft190_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 342572..342624 +
EsuBft190_10a-0001-exonagat-exon-18554Ectocarpus subulatus male Bft15bexonScaffold_463 343040..343890 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_10a-0001-exonagat-five_prime_utr-4593Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 338904..338940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_10a-0001-cdsEsuBft190_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 338941..339009 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft190_10a-0001-exonagat-three_prime_utr-7007Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 343200..343890 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft190_10a-0001 ID=EsuBft190_10a-0001|Name=EsuBft190_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1667bp|location=Sequence derived from alignment at Scaffold_463:338904..343890+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGCAGGAGGGCATCGCACCATCCAGGTGCACGGATGCACCACCCTC
AGGACCAGCGTCGATTCCTAAGGGGTAGCGGTCAGCACTTTCCTCACAGC
GATCAGGAGAGCCTGGGCCTTTTCAGTGGGGATGGCAAGCGACGCGTGGT
CAAGCCGGAGCGGATCATCATCGTGCGCCACGGGGAGAGTCTGGGGAATC
GAGACGAGTCGACTTACGTCCACGTCCCTGACTGGAAGATTCCCTTGACG
AAGAAGGGGTTCGGGGAGGGCCAGAAAGCGGGGGAGAAGATCAAGGAGTA
CATCGGAGACAAGCCACTCTTCATCTACACGTCTCCTTACCTCAGAACAA
AGCAGACCTTGGCTGGGATGGTGGAGGCCTTCGACACCAACTACATCGTC
GGGGTAAGGGAGGAGCCTAGGCTGACGGAGCAACAGTTCGGGAATTTCCA
GAACCTGGCGACCATCGTCAACTCCAAGGCGGAGCGGGCACGCTTCGGCC
GTTTCTACTACCGATTTCCCCAGGGCGAGTCTGGACTGGACGTGTACAAC
AGGGCGACGTCGTTCATCGCAACCATGTTCAGAGACTTCGCCAACGAGAG
CATTGCCAGAGATGACCTGAACGTTATCATCGTCACGCACGGCCTCACCC
TTCGCTTGCTGGTGATGCGGTGGTTCCAGTACTCGATCGCAGACTTCGAG
GAGACGCTTAACCCAGAGAACGGCAGCTTTGTCGTCATGGAGCGGAAAGA
AAAGGAGGACACGGATTCTCGCTTTTTCAAAGATGTGAGTGCGGAGCGAC
GGGATCTCCGACACTGGTATGAGCTGACACCAGAGAGTAGGGCACACATC
AATTTCAAGGAGCAGCAGCAATTCGGGTCCCTGTGGAAGCTCTTGTCCGA
GCTGCCCGATGAGCCGGGAGTGCTACCGGAGGAGTTCATGAACAAGACGT
CGGAAGACCCGAACAAGAACAACTGACAATCTTTCAGAGACAGACGTTAG
CCAGTACCGCTAGAGATTTCGCACAATCAAGAGAAATTGCGTTTGGAAGT
TAGATACATTAATGATACACTAGATAAAAGACAGTGTGGTTTGAATCCAT
AGTAGTATGTTGTTCTGAAAGCGCCAGCATGTCCCGGGAAATAGTTCAAG
TTGCATGTACCAGTGGGCCTCTTTAAGTTGAGTTGAATCACGAAGCGCCT
GCGTTGTTCCAGTGCAAGGGATTCATTCGGCATCTGTGCTAGGCTCTTTC
ATGATGCCGTCCGGCCCGAGGTACTAAGCGTCAACCGATTGTTTTGATCC
GTTGAGCGCACGGGGAGGGGTACGTACCCATGTTTTGCGTGCCTTAGCGG
TTAGACCATTTCCAGCGGGAGTCATTTCTCATTGTCACTCCACGCTGCAC
CGCAAGCCAGCAGCGGGCGCGATGGAAATGAACCTTCGCGATAAGGTGGA
GGTGGCCGAGGTGGGAAAAGGGGTTGTTCCGAAACCGAAAATTTTTCGTG
AAATGGAGCTGCGGGTCAGGCGATTGATCTCGGAGAACGCCTATAGTATG
AGCAATACGAGCAAGACAAGTTTGAGGGCACGATGTCAACGGATATGGAT
ACCTCAACTAGGGCGTCACAATGTCGTTCACTTGCGGGAAGGGAGTGCGA
GGTTCTCATCACATGCT
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protein sequence of EsuBft190_10a-0001

>EsuBft190_10 ID=EsuBft190_10|Name=EsuBft190_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=312bp
MHHPQDQRRFLRGSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGE
SLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSP
YLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAER
ARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVT
HGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDV
SAERRDLRHWYELTPESRAHINFKEQQQFGSLWKLLSELPDEPGVLPEEF
MNKTSEDPNKNN
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mRNA from alignment at Scaffold_463:338904..343890+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft190_10a-0001 ID=EsuBft190_10a-0001|Name=EsuBft190_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4987bp|location=Sequence derived from alignment at Scaffold_463:338904..343890+ (Ectocarpus subulatus male Bft15b)
CAGCAGCAGGAGGGCATCGCACCATCCAGGTGCACGGATGCACCACCCTC
AGGACCAGCGTCGATTCCTAAGGGGTAGCGGTCAGCACTTTCCTCACAGC
GATCAGGTGCAGTACAGGAGCCATGTGCTTCATAGAGGAGCAGTGTTTTT
CGGTACGAGTTGGACCAAGCAGAGCTGGGTGTCCTACATACGCGTCCTTA
CCCAGATTGTTCTTGCATCGGTCTGTTTACTTCCTGCTGCACTAGAAAAA
ATACGTAAACACACAGAAAGAATACCCGTTCGAGATATACCCGCATTCGA
ACGGGATCTAGTCTTTTTCAGTGAGCGGAGGAAAACTGCTGTATGCGTAT
ATCCCAGCGGGGGAATCGTTGCGACCGAATGTATAGTAACGTGGCAAGTT
GCGAGTTTGCACGGTCTGTGACAGAGCTAATGTACGAAACAACAATGTGC
CGCTCAGCGCTCATGCACGTCATTTTGATGATTGTAGGCTGTTCCAGGGT
AGATGAGGTGACCACGTTCCTCCTGTCTACCAGCGGCCGGAAAAACACGC
TCTGCAGCTTCTGTATGCCTGTGGTGTTAAGCATCTCAGGAGGCATGTTG
TATGCGTATACCGTCTGCAAGTCGCGAACCCTCCTCCTGTAGAACGCTGT
CATTTACCCCTTCTATACTGCTTCGGCCTACTTCCAGGCGTTTGATGTTC
TTACATGTATACGGAGTCTGATAGTTGTTCATCACGCTTGAAGCATATCT
CAAGTGTGCACAAGCAAGCAGAGGATCAGGTTAGTGCTGGCGCTTCCAAC
CTATCAATAGCCATCGCGGTCCGCCCTCACAACAGGAGAGCCTGGGCCTT
TTCAGTGGGGATGGCAAGCGACGCGTGGTCAAGCCGGAGCGGATCATCAT
CGTGCGCCACGGGGAGAGTCTGGGGAATCGAGACGAGTCGGTAAGCACTC
AATAGATCGGATAAACACACCTTATCGCCAAGCCTCATTTCATGCGTGTT
CTTAGCTCAGCCGTTCAGCCTGTATGTGCCGAAACAGTTATCTAGTGCTT
GGCTTTTCCCTCGCGTTCCGGGCTCACATCGAGCTTCTCAACAACGTCTG
TACTTCGCAAAGCCATGCATGTGCCCGGTGCCCGGTGGTCCCTTGTCATG
CACTTCACACCTTGCACCAGCCGTCTTCACCCCCTCCACAATTACTCCAC
CCTCATGTATCTATCACAAACACGCTGCTGCTCTGCCGCGACTCCGTCCA
GACTTACGTCCACGTCCCTGACTGGAAGATTCCCTTGACGAAGAAGGGGT
TCGGGGAGGGCCAGAAAGCGGGGGAGAAGATCAAGGAGTACATCGGAGAC
AAGCCACTCTTCATCTACACGTCTCCTTACCTCAGAACAAAGCAGGTGCG
CCATGTGCAGGGACGACCTTGTTTGCTGTTTTTCTGGATGCACCTGCTTT
CCCGAGCGATGGGATATAATTCCCCTGGGCCTGTTTCAATGGTACTTGTT
AGGCAATACATATACGTACAATCAAAGAAAGCGCACCCGTTCGAAATGCT
GAACTGTATAACCACAGCAGTCGACGGGGATGGGTTGAAGTCTGACCTTT
TCGTTGAACAACGTGGGGATGTGTTTTTCTTTGTCGTGAAGGTAGGAACG
TTGCTGAGTGAAGGTCAGAAAAAGGTGTTGGTGGCGAGGACAGACAGACA
ACCTCCACGTTATGGCCGTGATGCCCGCGTCGAGTTGTGTTTTTGAAATC
GCCGTGGTGCCGGTCGTACGGGACAAGCGACCCTTATCCCGATCCTGACG
CGCCGTGGGGTATCTCAACCGGAATCATCACTGGCCACGTCTGGCGGACA
CCCCAATCAAACGTGTACTAAATTCATGCATCTCTCGAATGACGATGACG
ATCTTGTTGTCCTTCTTGAACAAACCTATCAAGAGCATCTAGAGGTCTAC
GGTGGTAGCTGTAAGGCTCAGAAATACACCCGGGCAGACCATGAGAGGTT
TCCAACCCCGTTGCTCCCTCCATTCCTCCCCACCGCCACGCTGTTCGTGC
ATCCCCCAACGTCTCATACCCTGCCCCACGTGTCGTGCCTCCCCCCTCTT
TTGTCTTGGGTGCTTGTGTGCGGCCGGGCTCGTCATGTCGTTTGCAGACC
TTGGCTGGGATGGTGGAGGCCTTCGACACCAACTACATCGTCGGGGTAAG
GGAGGAGCCTAGGCTGACGGAGCAACAGTTCGGGAATTTCCAGAACCTGG
CGACCATCGTCAACTCCAAGGCGGAGCGGGCACGCTTCGGCCGTTTCTAC
TACCGGTATGATACGTGTTGTGTGTTGTGTGTTGTGTGTTGACGTGTGTG
ACTATTCTCCGCCAGCCAAGTGTGGAGTGTGGAGTGTGATGGACTGCCTG
TGCAAAAGTATCTTTATTATATAGAAAGACTAGGCAGAGGGCACGCAGAA
TCCAACCCTAACCCTAACTTGGCCATCCGATACCTTATCCAGTAGGTTTG
CTTACTTGAGAAAAACCTGCGTAGGTGAGTGTGGTGTTGATGTTCGTTCC
CAACAGACAAGGCACCGTTCCGCCCTAGTAACAATACACCTCAACCTTGC
CTAGTGCCTCGAACTTCACGCGATGGTTCACGAACTACCCTCGTGTAGGC
CCCGTGACGAGAACAAAAGAGATGAAGAGATTGGTGTACCCCCGATAAGT
ATCCCCCACGCTTACCCTTCCTCCCTCCCGCCGGCCGCGATGGCCCAGAT
TTCCCCAGGGCGAGTCTGGACTGGACGTGTACAACAGGGCGACGTCGTTC
ATCGCAACCATGTTCAGAGACTTCGCCAACGAGAGCATTGCCAGAGATGA
CCTGAACGTTATCATCGTCACGCACGGCCTCACCCTTCGCTTGGTGAGAG
CTCTCAGCTATCATCCCATGCTGGGGAGGGAGGGGAAGGGAAGGGGCGAG
GTTGGGGGCTCGTATCATGCTAGCACCCCGGGTTGACATGATGAGATGGT
TGTGAATGTGAAAATCTGAGGTGCACAACAGACGACCATTTTTGCAGGAA
ATCGCCACCTTGTCGGCGTACTGAGAGCGCCCTATTTCTACCGTTTCCCC
CCGACCGCGACGTCGGATGAGTCATGTACAAAGTATTTTCCGATTTATAC
GCTGAACGCGTTTGTGGTATTGTTGCTCGTTTGTCATGGATGCCTGTCTG
TTTTCTCGCGTGTTTTTGTACTCTTTTTTCATTTGCTGCAGCTGGTGATG
CGGTGGTTCCAGTACTCGATCGCAGACTTCGAGGAGACGCTTAACCCAGA
GAACGGCAGCTTTGTCGTCATGGAGCGGAAAGAAAAGGAGGACACGGTAT
GAACCGGTGTTACGGGCCCACGACGTGTCAGCGCGTCCGTTCGAAACTCA
TCACCACTTTCCATGGTCACCCGGCAGCGCTACTCTACGCGTTGCGATAC
ATTCCCATTGTTGGATCGTGTTTTACTTTTTTGTCTGGCATGCAGGCCTT
TTCTTTTGCCAAACGAACAAGTGTGCCATCCGAAATGTAGACAGCTGTGT
GTGTAATGGCAACAGTTGATCGTGAAGACTGCTGTATCCTGTGGAAGCTC
GTAAAGCCACGTTGATGGGATTGATTTGATAAGTCGTCCTTTTCGTACCC
TCCTATCTTTGTCTACAGGATTCTCGCTTTTTCAAAGATGTGAGTGCGGA
GCGACGGGATCTCCGACACTGGTGAGAAGACTAGACTATAGCCTAGGCAG
CACTGCAGCATCACATGTACAAATTAGTCGGCTTGTAGCACGGCAAACGG
TCTCTCACAGTTATGTTGAGTCCCAGGACATAGCCGTGTGATAGTACACT
GCCCGCGTGCTTGACCACCGCAGAGAGAGCCATGGGACATGACTTGCCCA
ATTTGTGTACCTGTTTGGGACCTCTCTTGGAGTTCAATCACGAATCCGGC
ATTAGGTTGTGTGGAAACGCCACACCCTCGCTGCCAGAAGTAAAAACAAG
AGCATTCCCATCGGTACGCGCAGCGACATCAACACATGTAACCGCTTTGT
ACATTTCGTGCGTGACGATAAGGTCTACTCCACCATCATGTCGTGTTTGA
CTGTTTGGTACCGGTGTCTTGCTCCGGCCGTTTCAGGTATGAGCTGACAC
CAGAGAGTAGGGCACACATCAATTTCAAGGAGCAGCAGCAATTCGGGTCC
CTGTGGAAGCTCTTGTCCGAGCTGCCCGATGAGCCGGGAGTGCTACCGGA
GGAGTTCATGAACAAGACGTCGGAAGACCCGAACAAGAACAACTGACAAT
CTTTCAGAGACAGACGTTAGCCAGTACCGCTAGAGATTTCGCACAATCAA
GAGAAATTGCGTTTGGAAGTTAGATACATTAATGATACACTAGATAAAAG
ACAGTGTGGTTTGAATCCATAGTAGTATGTTGTTCTGAAAGCGCCAGCAT
GTCCCGGGAAATAGTTCAAGTTGCATGTACCAGTGGGCCTCTTTAAGTTG
AGTTGAATCACGAAGCGCCTGCGTTGTTCCAGTGCAAGGGATTCATTCGG
CATCTGTGCTAGGCTCTTTCATGATGCCGTCCGGCCCGAGGTACTAAGCG
TCAACCGATTGTTTTGATCCGTTGAGCGCACGGGGAGGGGTACGTACCCA
TGTTTTGCGTGCCTTAGCGGTTAGACCATTTCCAGCGGGAGTCATTTCTC
ATTGTCACTCCACGCTGCACCGCAAGCCAGCAGCGGGCGCGATGGAAATG
AACCTTCGCGATAAGGTGGAGGTGGCCGAGGTGGGAAAAGGGGTTGTTCC
GAAACCGAAAATTTTTCGTGAAATGGAGCTGCGGGTCAGGCGATTGATCT
CGGAGAACGCCTATAGTATGAGCAATACGAGCAAGACAAGTTTGAGGGCA
CGATGTCAACGGATATGGATACCTCAACTAGGGCGTCACAATGTCGTTCA
CTTGCGGGAAGGGAGTGCGAGGTTCTCATCACATGCT
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Coding sequence (CDS) from alignment at Scaffold_463:338904..343890+

>EsuBft190_10a-0001 ID=EsuBft190_10a-0001|Name=EsuBft190_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=939bp|location=Sequence derived from alignment at Scaffold_463:338904..343890+ (Ectocarpus subulatus male Bft15b)
ATGCACCACCCTCAGGACCAGCGTCGATTCCTAAGGGGTAGCGGTCAGCA
CTTTCCTCACAGCGATCAGGAGAGCCTGGGCCTTTTCAGTGGGGATGGCA
AGCGACGCGTGGTCAAGCCGGAGCGGATCATCATCGTGCGCCACGGGGAG
AGTCTGGGGAATCGAGACGAGTCGACTTACGTCCACGTCCCTGACTGGAA
GATTCCCTTGACGAAGAAGGGGTTCGGGGAGGGCCAGAAAGCGGGGGAGA
AGATCAAGGAGTACATCGGAGACAAGCCACTCTTCATCTACACGTCTCCT
TACCTCAGAACAAAGCAGACCTTGGCTGGGATGGTGGAGGCCTTCGACAC
CAACTACATCGTCGGGGTAAGGGAGGAGCCTAGGCTGACGGAGCAACAGT
TCGGGAATTTCCAGAACCTGGCGACCATCGTCAACTCCAAGGCGGAGCGG
GCACGCTTCGGCCGTTTCTACTACCGATTTCCCCAGGGCGAGTCTGGACT
GGACGTGTACAACAGGGCGACGTCGTTCATCGCAACCATGTTCAGAGACT
TCGCCAACGAGAGCATTGCCAGAGATGACCTGAACGTTATCATCGTCACG
CACGGCCTCACCCTTCGCTTGCTGGTGATGCGGTGGTTCCAGTACTCGAT
CGCAGACTTCGAGGAGACGCTTAACCCAGAGAACGGCAGCTTTGTCGTCA
TGGAGCGGAAAGAAAAGGAGGACACGGATTCTCGCTTTTTCAAAGATGTG
AGTGCGGAGCGACGGGATCTCCGACACTGGTATGAGCTGACACCAGAGAG
TAGGGCACACATCAATTTCAAGGAGCAGCAGCAATTCGGGTCCCTGTGGA
AGCTCTTGTCCGAGCTGCCCGATGAGCCGGGAGTGCTACCGGAGGAGTTC
ATGAACAAGACGTCGGAAGACCCGAACAAGAACAACTGA
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