EsuBft1875_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1875_2a-0001
Unique Name	EsuBft1875_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_389	contig	Scaffold_389:683909..687338 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4081.Solyc11g062200.1.1
ProteomeId	EsuBft1875_2
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	35493\|Streptophyta
Length	1008
Hectar predicted targeting category	other localisation
Evalue	2.08e-21
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,44UC5@71274\|asterids
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Mitochondrial protein
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1875_2a	EsuBft1875_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_389 683909..687338 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1875_2a-0001-exon	agat-exon-66329	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 683909..683914 -
EsuBft1875_2a-0001-exon	agat-exon-66328	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 684066..684400 -
EsuBft1875_2a-0001-exon	agat-exon-66330	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 685539..685808 -
EsuBft1875_2a-0001-exon	EsuBft1875_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 686942..687338 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1875_2a-0001-cds	EsuBft1875_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_389 683909..683914 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1875_2a-0001	EsuBft1875_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_389 683909..687338 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_389:683909..687338-
coding sequence from alignment at Scaffold_389:683909..687338-

spliced messenger RNA

>EsuBft1875_2a-0001 ID=EsuBft1875_2a-0001|Name=EsuBft1875_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1008bp|location=Sequence derived from alignment at Scaffold_389:683909..687338- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTTGGCCACTCAAACCAGGCCGGACATCGCGAATGCAGTACGAGC
AGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGCACTCG
GTATTTTAGGGTACGTGCGTAGGACGAGTTGGATGGGGATTACGTTTGAG
AGGGGCGTCGTGACAGGTATGAGCATGCAGGTGTTTGTGGATGCCGACTA
TGCAAGCAAGGCGGCAGACCGTAGGTCGGTCTCAGGAGGACTAGTGATGT
GTGGGGGTGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCGTCACG
CTCTCCACAACGGAAGCAGAGTATGTGGCAATTGCCGACGTCTTGAAGGA
AGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTATGTTGCCAGATGCAGCTG
CTGAATGTGCTCTTGTTCTTATCTGTAGCAGCAATGGTACACAACGGTTG
GCACGGTGGTTTCACGAGCTTCTCAACACCAAGTCGCCGACCATCAACCT
GCATGCGGCTAATAAGGTCAAGCGGTGGCCCACGTACGTGCCGCTCGACG
ACATTCCATCTCTACTTGAGGTCGAGGAAGTGGTACGGGAAATGGCCAAC
AGAAAGGCCGTCGGGCCGGACGACCTCACGGCTGAGCTGATCAAGCTTTT
CCTGGACGGAGATCAAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCA
AACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAGCCGC
CTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCG
GGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGG
CCTTCAACATGGGAGACGAAAAGGAAGGGGGTAAATGGAAAGAGAGCGCC
AAGGACCCGGAGGTGTGGTACAACAAGGTCAAGGACGGGGCGGCACGGTT
CATGAGGAAATGGCACAGGCAGGAGGCGGAAGTGTTTTCTTTTTCCGAGT
GGGGGTAA

protein sequence of EsuBft1875_2a-0001

>EsuBft1875_2 ID=EsuBft1875_2|Name=EsuBft1875_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=335bp
MWLATQTRPDIANAVRAARYCASPKMVHWKAALGILGYVRRTSWMGITFE
RGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVT
LSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAAAECALVLICSSNGTQRL
ARWFHELLNTKSPTINLHAANKVKRWPTYVPLDDIPSLLEVEEVVREMAN
RKAVGPDDLTAELIKLFLDGDQGCEETIEATVRKRRLCFAGFVMRMEDSR
LPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESA
KDPEVWYNKVKDGAARFMRKWHRQEAEVFSFSEWG

mRNA from alignment at Scaffold_389:683909..687338-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1875_2a-0001 ID=EsuBft1875_2a-0001|Name=EsuBft1875_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3430bp|location=Sequence derived from alignment at Scaffold_389:683909..687338- (Ectocarpus subulatus male Bft15b)
ATGTGGTTGGCCACTCAAACCAGGCCGGACATCGCGAATGCAGTACGAGC
AGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGCACTCG
GTATTTTAGGGTACGTGCGTAGGACGAGTTGGATGGGGATTACGTTTGAG
AGGGGCGTCGTGACAGGTATGAGCATGCAGGTGTTTGTGGATGCCGACTA
TGCAAGCAAGGCGGCAGACCGTAGGTCGGTCTCAGGAGGACTAGTGATGT
GTGGGGGTGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCGTCACG
CTCTCCACAACGGAAGCAGAGTATGTGGCAATTGCCGACGTCTTGAAGGA
AGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTATGTTGCCAGATGCAGGTA
TGCCGTGCATTCCGGTCTTCGAGGATATCAGGGAGCGATTCAGATTGCGC
ACAACCCGATCACGAACTCAAACTCGAAGCACATCGATGTACGGCATCAC
TTTATCAGGGAACTGGTAGAGAGGAAGGAGATTTCGATTACGCATGTGAC
GTCGGAGTTTCAGCATGCAGATTTCTTGACGAAGGCTATCAGCAAAGAAT
CTTTCGCGTTGCACAGACTTTGTGATGAATTTGCAGTGAAAGGAGTGTTT
TGGGATCACATCGTGTTTTGCCGCGGAGTGGAAAAGAGAGGATATGTACG
GGCTTGATCAAGAGATGGAGAGAGTCAAGTGGAGATGGTAGTGTTTTGGA
GAGTTAGTGTTTGGGACTTTTCTTGGTGATTTGGAAGAGTTGGTATGCGA
TTGATTATTTTCGGACGTTTTTTTTAGGTGTTGGGATTTTGAATTTTGTC
TTGGTTTTGATTGTGTTTTGGGATGAACTGGTATGAGAAGCATGACTTTG
ATATTTTGCCGGAGCATGACGATGCATACGAGCAGGGGAGCTATTCGATG
TACTCGTAGCATAGCATGGGGTGGTATATTGCGTATTCATATGCGGGATT
TGCAGTGACGGACTACGGAGGAACAAGAAGTTTCTTTATGTTTTCCTTGG
GAGTGTGGTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATCCACGCCCCGTC
ATGGGCCACCCGCTCTAAACTCCAAGCACAAAGAACTGGGTCACCCGAAT
TATCGATCAGGCGCGACGTGTACAGTGCCCACCCCCTCCTCTGCAAAAAT
TGCAGATTCCGAGGTGTATGTATGCACCCACCTTCGGCACACCTACCCCC
CTGCCAAATCCAATACTTGGATCACCCCCCCGCCCGTCCCCCCCTCCCCG
TTCGAATGTTCTTATCTCGCAGCTGCGCAGCTGCTGAATGTGCTCTTGTT
CTTATCTGTAGCAGCAATGGTACACAACGGTTGGCACGGTGGTTTCACGA
GCTTCTCAACACCAAGTCGCCGACCATCAACCTGCATGCGGCTAATAAGG
TCAAGCGGTGGCCCACGTACGTGCCGCTCGACGACATTCCATCTCTACTT
GAGGTCGAGGAAGTGGTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCC
GGACGACCTCACGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAG
GTCTCCTCCGCGAATTCCACGCCATTGTTGTGGACGTGTGGCAGACTGGG
GACGTACCACAGCAGCAGTGAAAGGATGCCACCATCAAAGTGCTGTTCAA
GAAGGGGGACACGATGAGTGCGGCAACTACCGGGGCATCTCGCTCGTCGC
ACACGCCGGCAAGGTGGTGCTTAAGGTCGTCGCTACACGACTGAGCCACC
ACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCA
CACCGGTCGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGAGCAAATGGAAACGCTC
AGCCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAA
CCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTT
ATGCGCATGGAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGTAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGT
CAAGGACGGGGCGGCACGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGTGTTTTCTTTTTCCGAGTGGGTTGTACCCTATTTTTGTTTTGTTTCC
CCGCGGCGTCGTATGTGCCGGGTTTTGAGACCACGTGCTTCACATTTTTT
TGTGGGCTATAGAGCTAATGTGAGAAACAACAACAACAACAACCTCAAGC
GTGCGTTCTTATTCTTAGCTGCAGGGGTAA

Coding sequence (CDS) from alignment at Scaffold_389:683909..687338-

>EsuBft1875_2a-0001 ID=EsuBft1875_2a-0001|Name=EsuBft1875_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1008bp|location=Sequence derived from alignment at Scaffold_389:683909..687338- (Ectocarpus subulatus male Bft15b)
ATGTGGTTGGCCACTCAAACCAGGCCGGACATCGCGAATGCAGTACGAGC
AGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGCACTCG
GTATTTTAGGGTACGTGCGTAGGACGAGTTGGATGGGGATTACGTTTGAG
AGGGGCGTCGTGACAGGTATGAGCATGCAGGTGTTTGTGGATGCCGACTA
TGCAAGCAAGGCGGCAGACCGTAGGTCGGTCTCAGGAGGACTAGTGATGT
GTGGGGGTGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCGTCACG
CTCTCCACAACGGAAGCAGAGTATGTGGCAATTGCCGACGTCTTGAAGGA
AGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTATGTTGCCAGATGCAGCTG
CTGAATGTGCTCTTGTTCTTATCTGTAGCAGCAATGGTACACAACGGTTG
GCACGGTGGTTTCACGAGCTTCTCAACACCAAGTCGCCGACCATCAACCT
GCATGCGGCTAATAAGGTCAAGCGGTGGCCCACGTACGTGCCGCTCGACG
ACATTCCATCTCTACTTGAGGTCGAGGAAGTGGTACGGGAAATGGCCAAC
AGAAAGGCCGTCGGGCCGGACGACCTCACGGCTGAGCTGATCAAGCTTTT
CCTGGACGGAGATCAAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCA
AACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAGCCGC
CTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCG
GGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGG
CCTTCAACATGGGAGACGAAAAGGAAGGGGGTAAATGGAAAGAGAGCGCC
AAGGACCCGGAGGTGTGGTACAACAAGGTCAAGGACGGGGCGGCACGGTT
CATGAGGAAATGGCACAGGCAGGAGGCGGAAGTGTTTTCTTTTTCCGAGT
GGGGGTAA