EsuBft1872_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1872_5a-0001
Unique Name	EsuBft1872_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:636251..639238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1872_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	137
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1872_5a	EsuBft1872_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 636251..639238 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1872_5a-0001	EsuBft1872_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 636286..639066 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1872_5a-0001-exon	agat-exon-5470	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 636251..636544 +
EsuBft1872_5a-0001-exon	EsuBft1872_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 637614..637873 +
EsuBft1872_5a-0001-exon	agat-exon-5471	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 638416..639238 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1872_5a-0001-exon	agat-five_prime_utr-4487	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_630 636251..636285 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1872_5a-0001-cds	EsuBft1872_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 636286..636544 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1872_5a-0001-exon	agat-three_prime_utr-6817	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 639067..639238 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:636251..639238+
coding sequence from alignment at Scaffold_630:636251..639238+

spliced messenger RNA

>EsuBft1872_5a-0001 ID=EsuBft1872_5a-0001|Name=EsuBft1872_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1377bp|location=Sequence derived from alignment at Scaffold_630:636251..639238+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGAACATGTCCAGCACCCGCCCAAAGAGAAGACAATGCCCAGCGCAAAG
GCCCTGGATCTGGCGCGCGACGAGGTTGCCAAGAGGGAGGCGGCACGGAC
AGCCGGTCGGGTGGGCTTTGCGGCTCTAGGCCAGCAGCACGCCCGAGACC
TCGAGGCAGGGGGAGGAGAGGAGCAAGCGGCCGGGGGAGGCGGCGACGAT
GTCCAAGTCGTGGCAGCACCAGCAGCAAAGCAGGCTAGGGTTAGGACGAG
CACGAAGTGGCCTCCTACTTACGACTTGGCGCTGGCAAGGGCGGGTCTGC
AGCACGAAGTGTGGAAAGTGAATGGGAGCGGGCGTTCGGTCGGCGAAAGG
TGGGACGCCTGCTGGAAGACTCTCAACCGGGAGCCCTTGGTCAGGATGTT
CAAGGAGAAGTCGTCTTCAATTTGCAAGCATCGCTACGACAAGATCGTTG
ACGACCAGAGCAAGAGCGATGGTAAAGCCCTGCGGGACTCCGGAGCCGGC
ACTGCTGAGAGTGGCTCGGAGGACGACGTAGAGAAGAATACCAAGGTCCA
GCTGGACAAAGTTCTGACCGCGATAGTGGACGCGAAGGCTGCCGCGAGGC
ATGACTCGGAGGAGACCAAGCAGAAGAAAGCCGACGAGGCGGCCTCGCAC
TCCGCGATGGGGATGTGGGCCATCAACCAGGGCAACGCCCGATGCGGGCC
GGGCGCGAAGGCTACATCATTCGAAGAAGCTGTTGCCGCCGACAACATCG
CGTTGGGTTCCCGCTCCGGTGCAGCGGCCGGTGGCCGTGCCAGCGGTCGG
GTGAGTCCGGCCAGCAGCATCGGGGGGGCGAGGCCCGCGTCGGAGGCTTC
GACGGTTGGCGCTGCCAGTGGTCGATCGAGCCCGACCATGAGTACGGGCG
GGCTAGACGACGACATATCGCCCGCGGGGAGCGGGCCATCGAGGAAGGTT
CCACCGCTTGGCGAATTGGTGAAGCACATGGGGTCGCTGAGCATTCCGAC
GCTTGCGCAAAGTGCCGGGGTCTCCACGGAGGAGGCGGACTACTTCCTCA
ACACGGGCTTCATGGCCGACGAAGTTCAGCCGGAAAGGGCCATGGCCATG
ATGACGGTACTACTCGACAAAAGGCATAGTCTCCAGCGCGGGGGAGACAG
CGTCCAGGACTTCATGGATGATCTTGGTGAAGAGGATATGGCTGCCCGGG
TTTGATACGTTTGACGAGTCGGTCATGTTTAAACTGCTCGAGCTCTACGG
CGTGGAAATGATGGACTTCCGCAGCCTGCCGGAATCGAATTGGTTTCACA
GCGGATGGCCCATGGAACGTGTTACGCCGGACAAGGTGCTTCAGGTTACG
TAGCGGGTGGCGCGGTTGTTGGTGCTT

protein sequence of EsuBft1872_5a-0001

>EsuBft1872_5 ID=EsuBft1872_5|Name=EsuBft1872_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=389bp
MPSAKALDLARDEVAKREAARTAGRVGFAALGQQHARDLEAGGGEEQAAG
GGGDDVQVVAAPAAKQARVRTSTKWPPTYDLALARAGLQHEVWKVNGSGR
SVGERWDACWKTLNREPLVRMFKEKSSSICKHRYDKIVDDQSKSDGKALR
DSGAGTAESGSEDDVEKNTKVQLDKVLTAIVDAKAAARHDSEETKQKKAD
EAASHSAMGMWAINQGNARCGPGAKATSFEEAVAADNIALGSRSGAAAGG
RASGRVSPASSIGGARPASEASTVGAASGRSSPTMSTGGLDDDISPAGSG
PSRKVPPLGELVKHMGSLSIPTLAQSAGVSTEEADYFLNTGFMADEVQPE
RAMAMMTVLLDKRHSLQRGGDSVQDFMDDLGEEDMAARV

mRNA from alignment at Scaffold_630:636251..639238+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1872_5a-0001 ID=EsuBft1872_5a-0001|Name=EsuBft1872_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2988bp|location=Sequence derived from alignment at Scaffold_630:636251..639238+ (Ectocarpus subulatus male Bft15b)
ACGAACATGTCCAGCACCCGCCCAAAGAGAAGACAATGCCCAGCGCAAAG
GCCCTGGATCTGGCGCGCGACGAGGTTGCCAAGAGGGAGGCGGCACGGAC
AGCCGGTCGGGTGGGCTTTGCGGCTCTAGGCCAGCAGCACGCCCGAGACC
TCGAGGCAGGGGGAGGAGAGGAGCAAGCGGCCGGGGGAGGCGGCGACGAT
GTCCAAGTCGTGGCAGCACCAGCAGCAAAGCAGGCTAGGGTTAGGACGAG
CACGAAGTGGCCTCCTACTTACGACTTGGCGCTGGCAAGGGCGGGTGAGT
GAGTCTTTCCCCGCGCAAGGGTATGCTCTTTTTTTCTAGAGAGAGGCGTT
TGTTGGCTTGGATGTGTTCCCTCCCCAAACCCCACCCCCATACGCTCCGA
ACGCGACACAGCACTGCAGGAGCAGCCGGCCACAGCAGTGGTATACGTAC
TTGCTGTCTCCGTACTGGTGCGATTTCCTGTGCTGGAGTTAGTCGTTTCC
TTTGCTGGGGTTGAGGGAGCGACCCATGTGCGCGCGCACCCATGCACGCT
GTTTTTGAACTGTAAAAGAGACAGCCACTCCGAACCAGATTGTTGATCCT
TGGCAACGAGGGTGCAACGAGTGCACAACATATACGAAAGATTCATTCGA
ATAGCAGCGGAGTAGGGTAGGAACACAAAGCTATATTCGGTGTTCGTAGG
GGAGATACAAGTCTTGCTTGGCGAAGAAGGTGAGACTTTCTTGCACTGAT
TCCGACCTGGAAAAAATGCACGTCACATGTGGCATCATGTTGAAAATTTA
AAAGCAGCGACGAGTTTTTTGGGCGTACGAAGCCGCTGCATCTCCCAGTA
GATGCAGTCTACTTGCCAAGAATGTCACATGTCGCCTTTAGATGGAACCA
GCAGGACAAAGGTGCGCACAAAATTGTAAGCGCAAGGTGTACTCGACTAG
TACATTTTCGCTACACAACGGCACATAGCCCAGATATTATGGTGGGCGCG
GATCCGCTGCTGCGTCCCACAGGTTAGGCAGTCTACCCGTGGCACATCAT
GTTGCATCATGTTATAAGGGGTTGCCCGCAGCGTTACTTATCCTGCATCC
CGCTGTCGCCACAGTAGATGCAGTCTACCCGAAAGAATTTCGAAACAACT
ACTGCGAAGCACCGCGGACCCGGTGCAGTTGACAACAAGCGCAATAGCCA
TTCCGTGCGCTGCAAGACGGCCGGTGTTCACGGACTCGTTTACTGGCGAG
ACCTATGCTCCCTCCTCTACTCAAAATGCACATGTATCTGGTGTAAAAAT
GGAGCCGAAGCAAGTCCCCACTACGACATTCGAAGGCGCTCCCACCCTTC
TTGTCCTCTACAGGTCTGCAGCACGAAGTGTGGAAAGTGAATGGGAGCGG
GCGTTCGGTCGGCGAAAGGTGGGACGCCTGCTGGAAGACTCTCAACCGGG
AGCCCTTGGTCAGGATGTTCAAGGAGAAGTCGTCTTCAATTTGCAAGCAT
CGCTACGACAAGATCGTTGACGACCAGAGCAAGAGCGATGGTAAAGCCCT
GCGGGACTCCGGAGCCGGCACTGCTGAGAGTGGCTCGGAGGACGACGTAG
AGAAGAATACCAAGGTCCAGCTGGTGAGGGGTCCAGAGCCAGTAAGCTAT
CTCTACCTTTTGTGACGGGCGCAAGCCTGAGTGTACACGATCATGGCACA
GTCGAAACAAGACGGGCACGAAGAGCTGCACATGGAGAATCCACAATCCA
TAGAGTATCGTGAAACACCTGCGCTGTCCCGACCGAAGAAAATGCCTGCC
GTCCTCACCAACGTTACACTTGCAGATAAGAGGGGTACGCACAGGGCTAG
CCGTAAGCAACTGAAAATGCGCAGCATGACAAAAGAAAGACAGAAGTAGA
TAGACAGCACAAAAGCCCGAGTGCTACACGCCAGGCGACGCAAAACGTGC
AGAGAGTTAGCTTGCTGAGACGGTCCTTCACCCACAAAATCAAAACATCA
CTCCCACTCTGTATTGTCTAGGGGCGTGACGTAGCAGTGTTGACACGGAA
GTACAAAACAGACGATGCATATAGCTATCGCCGACGCTAGTGATGCACTT
TGTAAGTCGTAGAGCTGACGAGATGCCGCGCCGCTGTTGCTTCTTGTCCG
CGATGTGCCGCACAGGACAAAGTTCTGACCGCGATAGTGGACGCGAAGGC
TGCCGCGAGGCATGACTCGGAGGAGACCAAGCAGAAGAAAGCCGACGAGG
CGGCCTCGCACTCCGCGATGGGGATGTGGGCCATCAACCAGGGCAACGCC
CGATGCGGGCCGGGCGCGAAGGCTACATCATTCGAAGAAGCTGTTGCCGC
CGACAACATCGCGTTGGGTTCCCGCTCCGGTGCAGCGGCCGGTGGCCGTG
CCAGCGGTCGGGTGAGTCCGGCCAGCAGCATCGGGGGGGCGAGGCCCGCG
TCGGAGGCTTCGACGGTTGGCGCTGCCAGTGGTCGATCGAGCCCGACCAT
GAGTACGGGCGGGCTAGACGACGACATATCGCCCGCGGGGAGCGGGCCAT
CGAGGAAGGTTCCACCGCTTGGCGAATTGGTGAAGCACATGGGGTCGCTG
AGCATTCCGACGCTTGCGCAAAGTGCCGGGGTCTCCACGGAGGAGGCGGA
CTACTTCCTCAACACGGGCTTCATGGCCGACGAAGTTCAGCCGGAAAGGG
CCATGGCCATGATGACGGTACTACTCGACAAAAGGCATAGTCTCCAGCGC
GGGGGAGACAGCGTCCAGGACTTCATGGATGATCTTGGTGAAGAGGATAT
GGCTGCCCGGGTTTGATACGTTTGACGAGTCGGTCATGTTTAAACTGCTC
GAGCTCTACGGCGTGGAAATGATGGACTTCCGCAGCCTGCCGGAATCGAA
TTGGTTTCACAGCGGATGGCCCATGGAACGTGTTACGCCGGACAAGGTGC
TTCAGGTTACGTAGCGGGTGGCGCGGTTGTTGGTGCTT

Coding sequence (CDS) from alignment at Scaffold_630:636251..639238+

>EsuBft1872_5a-0001 ID=EsuBft1872_5a-0001|Name=EsuBft1872_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1170bp|location=Sequence derived from alignment at Scaffold_630:636251..639238+ (Ectocarpus subulatus male Bft15b)
ATGCCCAGCGCAAAGGCCCTGGATCTGGCGCGCGACGAGGTTGCCAAGAG
GGAGGCGGCACGGACAGCCGGTCGGGTGGGCTTTGCGGCTCTAGGCCAGC
AGCACGCCCGAGACCTCGAGGCAGGGGGAGGAGAGGAGCAAGCGGCCGGG
GGAGGCGGCGACGATGTCCAAGTCGTGGCAGCACCAGCAGCAAAGCAGGC
TAGGGTTAGGACGAGCACGAAGTGGCCTCCTACTTACGACTTGGCGCTGG
CAAGGGCGGGTCTGCAGCACGAAGTGTGGAAAGTGAATGGGAGCGGGCGT
TCGGTCGGCGAAAGGTGGGACGCCTGCTGGAAGACTCTCAACCGGGAGCC
CTTGGTCAGGATGTTCAAGGAGAAGTCGTCTTCAATTTGCAAGCATCGCT
ACGACAAGATCGTTGACGACCAGAGCAAGAGCGATGGTAAAGCCCTGCGG
GACTCCGGAGCCGGCACTGCTGAGAGTGGCTCGGAGGACGACGTAGAGAA
GAATACCAAGGTCCAGCTGGACAAAGTTCTGACCGCGATAGTGGACGCGA
AGGCTGCCGCGAGGCATGACTCGGAGGAGACCAAGCAGAAGAAAGCCGAC
GAGGCGGCCTCGCACTCCGCGATGGGGATGTGGGCCATCAACCAGGGCAA
CGCCCGATGCGGGCCGGGCGCGAAGGCTACATCATTCGAAGAAGCTGTTG
CCGCCGACAACATCGCGTTGGGTTCCCGCTCCGGTGCAGCGGCCGGTGGC
CGTGCCAGCGGTCGGGTGAGTCCGGCCAGCAGCATCGGGGGGGCGAGGCC
CGCGTCGGAGGCTTCGACGGTTGGCGCTGCCAGTGGTCGATCGAGCCCGA
CCATGAGTACGGGCGGGCTAGACGACGACATATCGCCCGCGGGGAGCGGG
CCATCGAGGAAGGTTCCACCGCTTGGCGAATTGGTGAAGCACATGGGGTC
GCTGAGCATTCCGACGCTTGCGCAAAGTGCCGGGGTCTCCACGGAGGAGG
CGGACTACTTCCTCAACACGGGCTTCATGGCCGACGAAGTTCAGCCGGAA
AGGGCCATGGCCATGATGACGGTACTACTCGACAAAAGGCATAGTCTCCA
GCGCGGGGGAGACAGCGTCCAGGACTTCATGGATGATCTTGGTGAAGAGG
ATATGGCTGCCCGGGTTTGA