EsuBft1872_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1872_4a-0001
Unique NameEsuBft1872_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:632709..634081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1872_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length98
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1872_4aEsuBft1872_4aEctocarpus subulatus male Bft15bgeneScaffold_630 632709..634081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1872_4a-0001EsuBft1872_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 633852..634081 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1872_4a-0001-exonagat-exon-5468Ectocarpus subulatus male Bft15bexonScaffold_630 632709..633359 -
EsuBft1872_4a-0001-exonagat-exon-5469Ectocarpus subulatus male Bft15bexonScaffold_630 633596..633859 -
EsuBft1872_4a-0001-exonEsuBft1872_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 634015..634081 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1872_4a-0001-exonagat-three_prime_utr-6815Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 632709..633359 -
EsuBft1872_4a-0001-exonagat-three_prime_utr-6816Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 633596..633851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1872_4a-0001-cdsEsuBft1872_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 633852..633859 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1872_4a-0001 ID=EsuBft1872_4a-0001|Name=EsuBft1872_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=982bp|location=Sequence derived from alignment at Scaffold_630:632709..634081- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACTGAGCGACCTCTCTCTTCGCCGGCCGGGCGTTCGGCTGCTGC
TGGAGGCGCGATTTCAGGCAAGTAGTCTCGTCCCTTACGAATGCGACGTT
GAGTGATCGTTTCCATTTACATGATGATATTTAGTCTATTCTCAGGCTTC
GGCCCGCCCCTCGACTTCGGTTGTTAGTACGGTTTCGCCCCCCCCTGTTT
CCTCGGACTCAGGGCGTTTGCGTCGTGTTGCGTTTTCGGACCTTTCCCCG
CCTTTTGATTTCCCCGTTTCTCCGGAACCCTTTGCACCTTCTGTCCGTTC
TGCCGCATTCAATGCTGTAGACCCCGGACATCGTTGAGTTTTCGAACTCA
CCCCCGGTTTCGGTCGCCCCTGTTTCTTTGGAAACCTCTGCACCCCGTAG
CCTTTCTACCGCTCCCCATGCCGTAGATCCACGACTGATGCAGAACCCTG
GGTTTTCGAACCCCAACCCCCCTTCGGCATTTGTAGCACCAGTGCCGGGT
GTTTCGCGTAGTATGTTGTCCTCAGATCATGCTCCCACAGCTGCTTTGGT
AGCCCTCGCCACACCCCCTGCTGTCTCCGATGATCGTGCTTTGCCGCTCT
CTTCTAACACGGCACACACTTGTCAAGCATCGATCGATGCGACTGATGCA
GCTGCTCGTAATGCTCATGTAGCTACAGTACAACGAGCGTACATCACCCT
CAACTTGAAAAAAGTTGAGAATGTCGCTACCATGCCCTTCTCCGCTACTC
TGTTGCCGGGAGACGGCTATCAGCAGCTTATTCGCAAAACGAAAACGGCT
TTGTCCGATCTTTTGCTGTTGTGTGACGAGCAGAGTGAAGGTTTGACGGG
CACTGATTTTGTGCGTGGATGGGAACGTCCTCTCGCAAAAAAACTCTTGA
GTGCGATCACCCCTGACAAGCCCTCTACCGCCGATCTCGTCCTTGCCATT
ACGGATTACTTTCAGCTAGTGAAACGGAGCTT
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protein sequence of EsuBft1872_4a-0001

>EsuBft1872_4 ID=EsuBft1872_4|Name=EsuBft1872_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=24bp
MATERPLSSPAGRSAAAGGAISGK
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mRNA from alignment at Scaffold_630:632709..634081-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1872_4a-0001 ID=EsuBft1872_4a-0001|Name=EsuBft1872_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1373bp|location=Sequence derived from alignment at Scaffold_630:632709..634081- (Ectocarpus subulatus male Bft15b)
ATGGCAACTGAGCGACCTCTCTCTTCGCCGGCCGGGCGTTCGGCTGCTGC
TGGAGGCGCGATTTCAGGTACGAAGGAGGGACTTTCAGGAGGATGGGACG
CCGCAGCTGGTGGTGTCTGATGAGCCCACGCTTGCAGTGCCTTTACTACC
AGGTGCTGCTGGAGTTCCACGTGGAAGGACCTCTTGGGACAATTGGAAGA
CGGCGCCAGCGGTGGATTCCAGGCAAGTAGTCTCGTCCCTTACGAATGCG
ACGTTGAGTGATCGTTTCCATTTACATGATGATATTTAGTCTATTCTCAG
GCTTCGGCCCGCCCCTCGACTTCGGTTGTTAGTACGGTTTCGCCCCCCCC
TGTTTCCTCGGACTCAGGGCGTTTGCGTCGTGTTGCGTTTTCGGACCTTT
CCCCGCCTTTTGATTTCCCCGTTTCTCCGGAACCCTTTGCACCTTCTGTC
CGTTCTGCCGCATTCAATGCTGTAGACCCCGGACATGTACGTCGCGTTGA
GTTTTCGAACTCACCCCCGGTTTCGACCACCCCTGTTTCCTTGGAAACCT
CTGCACCTTCTGCCCGTTCTGCCGCATTCAATGCTGTAGACCCCGGACAT
GTACGTCGCGTTGAGTTTTCGAACTCACCCCCGGTTTCGACCACCCCTGT
TTCCTTGGAAACCTCTGCACCTTCTGCCCGTTCTGCCGCATTCAATGCTG
TAGACTCCAGACATGTACGTAGCGTTGAGTTTTCGAACTCACCCCCGGTT
TCGGTCGCCCCTGTTTCTTTGGAAACCTCTGCACCCCGTAGCCTTTCTAC
CGCTCCCCATGCCGTAGATCCACGACTGATGCAGAACCCTGGGTTTTCGA
ACCCCAACCCCCCTTCGGCATTTGTAGCACCAGTGCCGGGTGTTTCGCGT
AGTATGTTGTCCTCAGATCATGCTCCCACAGCTGCTTTGGTAGCCCTCGC
CACACCCCCTGCTGTCTCCGATGATCGTGCTTTGCCGCTCTCTTCTAACA
CGGCACACACTTGTCAAGCATCGATCGATGCGACTGATGCAGCTGCTCGT
AATGCTCATGTAGCTACAGTACAACGAGCGTACATCACCCTCAACTTGAA
AAAAGTTGAGAATGTCGCTACCATGCCCTTCTCCGCTACTCTGTTGCCGG
GAGACGGCTATCAGCAGCTTATTCGCAAAACGAAAACGGCTTTGTCCGAT
CTTTTGCTGTTGTGTGACGAGCAGAGTGAAGGTTTGACGGGCACTGATTT
TGTGCGTGGATGGGAACGTCCTCTCGCAAAAAAACTCTTGAGTGCGATCA
CCCCTGACAAGCCCTCTACCGCCGATCTCGTCCTTGCCATTACGGATTAC
TTTCAGCTAGTGAAACGGAGCTT
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Coding sequence (CDS) from alignment at Scaffold_630:632709..634081-

>EsuBft1872_4a-0001 ID=EsuBft1872_4a-0001|Name=EsuBft1872_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=75bp|location=Sequence derived from alignment at Scaffold_630:632709..634081- (Ectocarpus subulatus male Bft15b)
ATGGCAACTGAGCGACCTCTCTCTTCGCCGGCCGGGCGTTCGGCTGCTGC
TGGAGGCGCGATTTCAGGCAAGTAG
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