EsuBft1872_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1872_2a-0001
Unique NameEsuBft1872_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:617848..619605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LN28
ProteomeIdEsuBft1872_2
Protein domainsCoil
Protein domainsPTHR19303
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length90
Evalue8.63e-35
EggNOG OGs2CZS4@1|root,2SBGG@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1872_2aEsuBft1872_2aEctocarpus subulatus male Bft15bgeneScaffold_630 617848..619605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1872_2a-0001-exonagat-exon-5463Ectocarpus subulatus male Bft15bexonScaffold_630 617848..617914 +
EsuBft1872_2a-0001-exonagat-exon-5464Ectocarpus subulatus male Bft15bexonScaffold_630 618034..618294 +
EsuBft1872_2a-0001-exonEsuBft1872_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 619028..619605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1872_2a-0001-cdsEsuBft1872_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 617848..617914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1872_2a-0001EsuBft1872_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 617848..619605 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1872_2a-0001 ID=EsuBft1872_2a-0001|Name=EsuBft1872_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=906bp|location=Sequence derived from alignment at Scaffold_630:617848..619605+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACGCAACGCTGCTGCTGCTGCCTACGGGGTCAGCAAGACGTCGCT
CTCGCGGCGGCTGAGCGACCTCACGGAGCGTGTGAGACAGCTCTGCAACG
ACGGTCGACCGATCCCGTGGACCCCTGACAAGGGCCCGGGGAGGAGCTGG
CTTGAGGGCTTCCTCGGACGGCACAAGCGCATCAGCCTTCGACTCGCCCG
CATCTACGAGTCCAACAGGGTGACCTGCGTGGAAGATGAACGTCTGCACA
AGTTTTACGACTTTTGGGGCCAGTTCCTCGACGAGCACCAGCCGGCGGCC
GACCATGTCTGGAACACGGACGAGTCAGGTGGCACCGTTCAAGGTACGCA
GGGACAGCGGGTCGTGGCGGAACGGGGGCAGCCGGTGGTCGCCCAGATGC
GCTCCACCTCGCGAGAGAACGTCACTATAGTCACCACCATCAACGCCGCC
GGCGCCGTATTGGCCCCTACCATCATCTTCAAAGGGCAACGCTTCAACGG
AGATTGGGTCGCGGATCTCAACGGCCCGCCGGGCGCGTACTACGACTGCA
CGGAGTCGTCCTTCATGTGTGGTGACGTGTTCATCAAGTACATCCAGAAC
TTCCACAAGCAGCTCGGCGAGCGCAACTTGCTCGACGGAAAACCCCATGT
GCTCGTGCTGGATGGGCACGCGTCGCACGTGAGCTTGGACGTCATTAAGT
TGGCCATCTCCCTCAACATCCACCTCGTCCAGCTGCCCTCCCACATGTCC
CACATCACCCAGCCCTTGGACGTCGCTGGCTTCGGGTGCTTCAAGAAGGA
GCTGGCGAAGGTGATCCAGGCCTTCCCGGCGAGGAACGGAGGGGCACTAC
CGCGGAAGCGGGACATGGCCGGCATGATCGGGCTAGCGTGGGGNNNNNNN
NNNNNG
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protein sequence of EsuBft1872_2a-0001

>EsuBft1872_2 ID=EsuBft1872_2|Name=EsuBft1872_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=302bp
MSRNAAAAAYGVSKTSLSRRLSDLTERVRQLCNDGRPIPWTPDKGPGRSW
LEGFLGRHKRISLRLARIYESNRVTCVEDERLHKFYDFWGQFLDEHQPAA
DHVWNTDESGGTVQGTQGQRVVAERGQPVVAQMRSTSRENVTIVTTINAA
GAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGDVFIKYIQN
FHKQLGERNLLDGKPHVLVLDGHASHVSLDVIKLAISLNIHLVQLPSHMS
HITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGXX
XX
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mRNA from alignment at Scaffold_630:617848..619605+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1872_2a-0001 ID=EsuBft1872_2a-0001|Name=EsuBft1872_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1758bp|location=Sequence derived from alignment at Scaffold_630:617848..619605+ (Ectocarpus subulatus male Bft15b)
ATGTCACGCAACGCTGCTGCTGCTGCCTACGGGGTCAGCAAGACGTCGCT
CTCGCGGCGGCTGAGCGGTGAGTGTGCCATGCACGCACGGGTGGGCCCCG
GGACTGTCATGACCGCAGCAGAGAGGATGCGCTTGAAGATGTTCTGCTGT
ACGCTGGTCGGATCTATATTCCGCTCACCACCGCAGACCTCACGGAGCGT
GTGAGACAGCTCTGCAACGACGGTCGACCGATCCCGTGGACCCCTGACAA
GGGCCCGGGGAGGAGCTGGCTTGAGGGCTTCCTCGGACGGCACAAGCGCA
TCAGCCTTCGACTCGCCCGCATCTACGAGTCCAACAGGGTGACCTGCGTG
GAAGATGAACGTCTGCACAAGTTTTACGACTTTTGGGGCCAGTTCCTCGA
CGAGCACCAGCCGGCGGCCGACCATGTCTGGAACACGGACGAGTCAGGTG
AGCAATACAGGGTTGTGGTGTGGTGTCGGCAGTAGCTGCTGTGTGACGGA
TTGTGAGCTTGTTTCTACATTTGAGCTGCTGTGCACGACGTGAAAGCTGT
GCACGACGTGACAAAATAGGCAGAGTTCTGCTGCTGCTGTAAAAAAAATC
GAGTTTCCCGCAGCGCGTTGTCTCCGCTGAGGACCACTGCAACATGAACG
TGCAGTTGCTATAGACTAGTGTACGCTGGCTACTGTTTGGGATCCTTGAT
CATGTAGGCAGCATGCACACGTTGCTTCAAGAACAGTTTCGCATGCTGAT
ACACAGGATTTTTACGCAGCACACACACGGAATTGATGTGTGGGAAGGAG
AGGCTTGCAGCGGTGCCGCCGTTGCTGCTGCTGCTGCTGTGCGTAGTCTA
TCTTTCTCATCTTCGGCTAGTCTAGTCTACAGCAGTGGCCTCTCTGTGGA
CTTTTTTTTCTTTTTTTTGTAGGCTCAAGACGAGAAGGCTGTATTCTAGA
CTAGTGTGATAGCCCCAGCTCTGCAGCTGCGCCGGTACACCTTGCATGTG
AGGACATGCCACCGTGTTCGCCGTTCTCTCCTCCCCCCCCCCACCTCCCC
GCCCGCTCCCCCACCCATTTTAGGCTGGACGTTGGTGGTGCGTGAAAGTG
CTAGTGTCCCCTGTACTTAATCTCCTACTGCTTCTCCCTCCCCCCCCCTC
ACGCTTTGCCGCCGCAAAAAATCATTGCAGGTGGCACCGTTCAAGGTACG
CAGGGACAGCGGGTCGTGGCGGAACGGGGGCAGCCGGTGGTCGCCCAGAT
GCGCTCCACCTCGCGAGAGAACGTCACTATAGTCACCACCATCAACGCCG
CCGGCGCCGTATTGGCCCCTACCATCATCTTCAAAGGGCAACGCTTCAAC
GGAGATTGGGTCGCGGATCTCAACGGCCCGCCGGGCGCGTACTACGACTG
CACGGAGTCGTCCTTCATGTGTGGTGACGTGTTCATCAAGTACATCCAGA
ACTTCCACAAGCAGCTCGGCGAGCGCAACTTGCTCGACGGAAAACCCCAT
GTGCTCGTGCTGGATGGGCACGCGTCGCACGTGAGCTTGGACGTCATTAA
GTTGGCCATCTCCCTCAACATCCACCTCGTCCAGCTGCCCTCCCACATGT
CCCACATCACCCAGCCCTTGGACGTCGCTGGCTTCGGGTGCTTCAAGAAG
GAGCTGGCGAAGGTGATCCAGGCCTTCCCGGCGAGGAACGGAGGGGCACT
ACCGCGGAAGCGGGACATGGCCGGCATGATCGGGCTAGCGTGGGGNNNNN
NNNNNNNG
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Coding sequence (CDS) from alignment at Scaffold_630:617848..619605+

>EsuBft1872_2a-0001 ID=EsuBft1872_2a-0001|Name=EsuBft1872_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=906bp|location=Sequence derived from alignment at Scaffold_630:617848..619605+ (Ectocarpus subulatus male Bft15b)
ATGTCACGCAACGCTGCTGCTGCTGCCTACGGGGTCAGCAAGACGTCGCT
CTCGCGGCGGCTGAGCGACCTCACGGAGCGTGTGAGACAGCTCTGCAACG
ACGGTCGACCGATCCCGTGGACCCCTGACAAGGGCCCGGGGAGGAGCTGG
CTTGAGGGCTTCCTCGGACGGCACAAGCGCATCAGCCTTCGACTCGCCCG
CATCTACGAGTCCAACAGGGTGACCTGCGTGGAAGATGAACGTCTGCACA
AGTTTTACGACTTTTGGGGCCAGTTCCTCGACGAGCACCAGCCGGCGGCC
GACCATGTCTGGAACACGGACGAGTCAGGTGGCACCGTTCAAGGTACGCA
GGGACAGCGGGTCGTGGCGGAACGGGGGCAGCCGGTGGTCGCCCAGATGC
GCTCCACCTCGCGAGAGAACGTCACTATAGTCACCACCATCAACGCCGCC
GGCGCCGTATTGGCCCCTACCATCATCTTCAAAGGGCAACGCTTCAACGG
AGATTGGGTCGCGGATCTCAACGGCCCGCCGGGCGCGTACTACGACTGCA
CGGAGTCGTCCTTCATGTGTGGTGACGTGTTCATCAAGTACATCCAGAAC
TTCCACAAGCAGCTCGGCGAGCGCAACTTGCTCGACGGAAAACCCCATGT
GCTCGTGCTGGATGGGCACGCGTCGCACGTGAGCTTGGACGTCATTAAGT
TGGCCATCTCCCTCAACATCCACCTCGTCCAGCTGCCCTCCCACATGTCC
CACATCACCCAGCCCTTGGACGTCGCTGGCTTCGGGTGCTTCAAGAAGGA
GCTGGCGAAGGTGATCCAGGCCTTCCCGGCGAGGAACGGAGGGGCACTAC
CGCGGAAGCGGGACATGGCCGGCATGATCGGGCTAGCGTGGGGNNNNNNN
NNNNNG
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