EsuBft1844_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1844_3a-0001
Unique NameEsuBft1844_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:464958..465817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1844_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length65
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_3aEsuBft1844_3aEctocarpus subulatus male Bft15bgeneScaffold_372 464958..465817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_3a-0001EsuBft1844_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 465019..465321 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_3a-0001-exonEsuBft1844_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 464958..465369 +
EsuBft1844_3a-0001-exonagat-exon-95797Ectocarpus subulatus male Bft15bexonScaffold_372 465573..465817 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_3a-0001-exonagat-five_prime_utr-4371Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 464958..465018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_3a-0001-cdsEsuBft1844_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 465019..465321 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_3a-0001-exonagat-three_prime_utr-6648Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 465322..465369 +
EsuBft1844_3a-0001-exonagat-three_prime_utr-6649Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 465573..465817 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1844_3a-0001 ID=EsuBft1844_3a-0001|Name=EsuBft1844_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=657bp|location=Sequence derived from alignment at Scaffold_372:464958..465817+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGCGGTGCCCCCGGTGTGCATTTCCAAACGCAAAAAACCGATCGTGTC
CACGTTCGGAAATGCTCATCATTTCCAAACGCATGGCCGGTTGGAAACGT
GAAATCGAAAATGTTCAGGCGGAAAAGTGTCATTTCCGATCTTATAAGAA
ACAGTTTTTGGTCCGAATTTGGAAATTCACATTTTTGAACTGCATTTCCG
AACGTTCTAAGAAACCGCCTAAGAAACGTTTTTGCAGGCAGCATGTTGTT
TTTGGGGGGTTGGGAAATTACGCATTTTTCAACTGGATTTCCGAACGTTA
TAAGAGACAGCCTAAGGGTTCTCGGACCCGCACAAAATTTTCACGGGTAG
GTTTAGTACAGTAGAGTATGTTTAGTAGAGTATCGAGAATCTGTACTAAC
GGTTGAGTAGAGAGGTGAATACTCTAGTCACCTGAGTAGAGTACAGAGGT
TAGGTACTAAACTCAAAGAGTATATTTAGTAGAGTATGAAAAGCCGTACT
AAACCGCAAGAGTATGTTGAGTAGAGTATGAAGAGCCATACTATAAAGTG
AGTATGAGTAGAGTATGAAAAGCCGTACTATACTAAAAAAAAAGATGTTT
AGTAGAGTATTGAAGAGCCGTACTTACAAAAGTTTTAGTAGAGTACGAAG
AGCTGTA
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protein sequence of EsuBft1844_3a-0001

>EsuBft1844_3 ID=EsuBft1844_3|Name=EsuBft1844_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MLIISKRMAGWKREIENVQAEKCHFRSYKKQFLVRIWKFTFLNCISERSK
KPPKKRFCRQHVVFGGLGNYAFFNWISERYKRQPKGSRTRTKFSRVGLVQ
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mRNA from alignment at Scaffold_372:464958..465817+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1844_3a-0001 ID=EsuBft1844_3a-0001|Name=EsuBft1844_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=860bp|location=Sequence derived from alignment at Scaffold_372:464958..465817+ (Ectocarpus subulatus male Bft15b)
TGTGCGGTGCCCCCGGTGTGCATTTCCAAACGCAAAAAACCGATCGTGTC
CACGTTCGGAAATGCTCATCATTTCCAAACGCATGGCCGGTTGGAAACGT
GAAATCGAAAATGTTCAGGCGGAAAAGTGTCATTTCCGATCTTATAAGAA
ACAGTTTTTGGTCCGAATTTGGAAATTCACATTTTTGAACTGCATTTCCG
AACGTTCTAAGAAACCGCCTAAGAAACGTTTTTGCAGGCAGCATGTTGTT
TTTGGGGGGTTGGGAAATTACGCATTTTTCAACTGGATTTCCGAACGTTA
TAAGAGACAGCCTAAGGGTTCTCGGACCCGCACAAAATTTTCACGGGTAG
GTTTAGTACAGTAGAGTATGTTTAGTAGAGTATCGAGAATCTGTACTAAC
GGTTGAGTAGAGGTGAATACTCTAGTCACCTGAGTAGAGTACAGAGGTTA
GGTACTAAACTCAAAGAGTATATTTAGTAGAGTATGAAAAGCCGTACTAA
ACCGCAAGAGTATGTTGAGTAGNTTCTCGGACCCGCACAAAATTTTCACG
GGTAGGTTTAGTACAGTAGAGTATGTTTAGTAGAGTATCGAGAATCTGTA
CTAACGGTTGAGTAGAGGTGAATACTCTAGTCACCTGAGTAGAGTACAGA
GGTTAGGTACTAAACTCAAAGAGTATATTTAGTAGAGTATGAAAAGCCGT
ACTAAACCGCAAGAGTATGTTGAGTAGAGTATGAAGAGCCATACTATAAA
GTGAGTATGAGTAGAGTATGAAAAGCCGTACTATACTAAAAAAAAAGATG
TTTAGTAGAGTATTGAAGAGCCGTACTTACAAAAGTTTTAGTAGAGTACG
AAGAGCTGTA
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Coding sequence (CDS) from alignment at Scaffold_372:464958..465817+

>EsuBft1844_3a-0001 ID=EsuBft1844_3a-0001|Name=EsuBft1844_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_372:464958..465817+ (Ectocarpus subulatus male Bft15b)
ATGCTCATCATTTCCAAACGCATGGCCGGTTGGAAACGTGAAATCGAAAA
TGTTCAGGCGGAAAAGTGTCATTTCCGATCTTATAAGAAACAGTTTTTGG
TCCGAATTTGGAAATTCACATTTTTGAACTGCATTTCCGAACGTTCTAAG
AAACCGCCTAAGAAACGTTTTTGCAGGCAGCATGTTGTTTTTGGGGGGTT
GGGAAATTACGCATTTTTCAACTGGATTTCCGAACGTTATAAGAGACAGC
CTAAGGGTTCTCGGACCCGCACAAAATTTTCACGGGTAGGTTTAGTACAG
TAG
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