EsuBft1844_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1844_2a-0001
Unique NameEsuBft1844_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:464361..464956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1844_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length59
Hectar predicted targeting categorychloroplast
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_2aEsuBft1844_2aEctocarpus subulatus male Bft15bgeneScaffold_372 464361..464956 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_2a-0001-exonEsuBft1844_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 464361..464956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_2a-0001-cdsEsuBft1844_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 464361..464846 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_2a-0001-exonagat-five_prime_utr-4370Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 464847..464956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1844_2a-0001EsuBft1844_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 464361..464846 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1844_2a-0001 ID=EsuBft1844_2a-0001|Name=EsuBft1844_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=596bp|location=Sequence derived from alignment at Scaffold_372:464361..464956- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAACAACAGCGCAGCAACTAGACCGCGTTCACCATCCACAGCAGC
ACAGCAGCGAGTACACAGCTGCTGTCCTGTGTCTCGCGTGCACCGCGCAA
ACTCCCTCGCATGCTGCTACTGGGCCTGTTGTTGGTGGTAGCCTGGGTCC
GTGTGGGCACCATGTCATCGTCAGAAACGGGTGCCGTCAACGTGCCTGCT
GCGTTCAGCGTCGCGTTGGCGGCTTTCAATCAACAGCAGCAGCGCACGCT
CGTGGCATGGGATCTTGTACTCGACGATCTAGATGAGCTCGATCCCGACT
CCGAAGAAGAGGAGGAGGACAACCGTGAGATCAAGAGGCGACGCGTATAC
CCTCGTAAGGATTACAATATCTCTGGCTGGGCGATTCAGCTGCAGGAGCT
CAAGGATCTTGAGGTGGATGGAATTGTCGGCCCCACGAGCAGGCCTGCTC
GCCGCTTCCGCGAGAGCTTTCGTCTCCCTTACCCTTTCTTCGTGGAGCTG
GTGGCCCTGGTGAAGCAGAGGGATTGGTTCCCGACTGGGAAGCAAGATGC
GTCCGGACGTCGGGGTATCCCCGTGCAATTAAAGGTGAACATTTAG
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protein sequence of EsuBft1844_2a-0001

>EsuBft1844_2 ID=EsuBft1844_2|Name=EsuBft1844_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=161bp
MLLLGLLLVVAWVRVGTMSSSETGAVNVPAAFSVALAAFNQQQQRTLVAW
DLVLDDLDELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDL
EVDGIVGPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGR
RGIPVQLKVNI
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mRNA from alignment at Scaffold_372:464361..464956-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1844_2a-0001 ID=EsuBft1844_2a-0001|Name=EsuBft1844_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=596bp|location=Sequence derived from alignment at Scaffold_372:464361..464956- (Ectocarpus subulatus male Bft15b)
ATGCACAACAACAGCGCAGCAACTAGACCGCGTTCACCATCCACAGCAGC
ACAGCAGCGAGTACACAGCTGCTGTCCTGTGTCTCGCGTGCACCGCGCAA
ACTCCCTCGCATGCTGCTACTGGGCCTGTTGTTGGTGGTAGCCTGGGTCC
GTGTGGGCACCATGTCATCGTCAGAAACGGGTGCCGTCAACGTGCCTGCT
GCGTTCAGCGTCGCGTTGGCGGCTTTCAATCAACAGCAGCAGCGCACGCT
CGTGGCATGGGATCTTGTACTCGACGATCTAGATGAGCTCGATCCCGACT
CCGAAGAAGAGGAGGAGGACAACCGTGAGATCAAGAGGCGACGCGTATAC
CCTCGTAAGGATTACAATATCTCTGGCTGGGCGATTCAGCTGCAGGAGCT
CAAGGATCTTGAGGTGGATGGAATTGTCGGCCCCACGAGCAGGCCTGCTC
GCCGCTTCCGCGAGAGCTTTCGTCTCCCTTACCCTTTCTTCGTGGAGCTG
GTGGCCCTGGTGAAGCAGAGGGATTGGTTCCCGACTGGGAAGCAAGATGC
GTCCGGACGTCGGGGTATCCCCGTGCAATTAAAGGTGAACATTTAG
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Coding sequence (CDS) from alignment at Scaffold_372:464361..464956-

>EsuBft1844_2a-0001 ID=EsuBft1844_2a-0001|Name=EsuBft1844_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=486bp|location=Sequence derived from alignment at Scaffold_372:464361..464956- (Ectocarpus subulatus male Bft15b)
ATGCTGCTACTGGGCCTGTTGTTGGTGGTAGCCTGGGTCCGTGTGGGCAC
CATGTCATCGTCAGAAACGGGTGCCGTCAACGTGCCTGCTGCGTTCAGCG
TCGCGTTGGCGGCTTTCAATCAACAGCAGCAGCGCACGCTCGTGGCATGG
GATCTTGTACTCGACGATCTAGATGAGCTCGATCCCGACTCCGAAGAAGA
GGAGGAGGACAACCGTGAGATCAAGAGGCGACGCGTATACCCTCGTAAGG
ATTACAATATCTCTGGCTGGGCGATTCAGCTGCAGGAGCTCAAGGATCTT
GAGGTGGATGGAATTGTCGGCCCCACGAGCAGGCCTGCTCGCCGCTTCCG
CGAGAGCTTTCGTCTCCCTTACCCTTTCTTCGTGGAGCTGGTGGCCCTGG
TGAAGCAGAGGGATTGGTTCCCGACTGGGAAGCAAGATGCGTCCGGACGT
CGGGGTATCCCCGTGCAATTAAAGGTGAACATTTAG
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