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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Status | Manually annotated |
| Seed ortholog | 2880.D7FR88 |
| ProteomeId | EsuBft1833_5 |
| Protein domains | IPR005200 |
| Protein domains | PTHR31983 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | endo- -beta-glucanase 1 os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:dse4 pe:1 sv:1 [Automatic annotation] |
| Nb exon | 8 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1818 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.88e-263 |
| EggNOG OGs | COG5498@1|root,KOG2254@2759|Eukaryota |
| Date last modified | 2016-09-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K01180 |
| EC | 3.2.1.6 |
| Description | Endo-1,3-beta-glucanase, N-terminal fragment, family GH81 |
| Description | glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group |
| COG category | M |
| BRITE | ko00000,ko01000 |
| Note | Endo-1,3-beta-glucanase, also known as laminarinase, catalyzes the hydrolysis of 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans (including laminarin from brown algae). Belongs to the family GH81 of the glycoside hydrolases. |
| Note | Gap from 151 to 201 |
| Note | Simeon A., annotator |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0016998 |
| EC | 3.2.1.39 |
| GO | 0052862 |
| GO | 0052861 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1833_5a-0001 ID=EsuBft1833_5a-0001|Name=EsuBft1833_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1818bp|location=Sequence derived from alignment at Scaffold_550:2147..6932- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTGGCCAAGATGGGGCGAATCGCGCTCATCGCCGAGGAAATGGGGCG
CCCGGAAGACGCCAGAATGGTGGCGGCTCGCCTGGCCGAAGCATCTCAGG
TTTGGCTGAACGGTACGGCGGGGTCCCCATTGCTCTACGACTTCCGGTGG
GGCGGCGTGGTCACTTGCGGCTGCGCGTATGAAAAGGACCACGGTTGCAT
GAATGGTATCGGCCCATATCAGTGCCCAGGCCTTAGCGACCCCGGGATGA
ACTTCGGCCTTGGCTTTTACAACGATCATCACTTCCATTTCGGTTACCAC
ATCTTTGCGGCGGCGATCGTCTCCAAGTTTTTCCCGGATTGGGGAATCAA
GCACCACGAGGCCGTGACGCTGCTCATCAGAGACATAGCAAACCCGTCCA
GCTCGGACCCTTTCTTCCCGGTGTTCCGACACAAGGAGGCACTGTCGTTC
ATTGCCCTGCTTTCTGAGTTTGTTGCTAGAGTCGCCAGGTACAACTCGCT
AAACCAACCTCTGGTTTTGAGACAGCATTGGTCATGTACAACCCCGCAAC
GTATTTTAAGAGAACCTTGCCATGAATACCAAGCACTTCCGCGGCGGTGC
CAGGATTGGTTCTTGGGGTCATCGTGGGCCCTTGGCATCCCCACCCTGGG
GGGGGTCCCGTACATGAACGGTCGCAACCAGGAAAGCAGCAGCGAGGCCG
TCAATGCGTACTACGCCGTCGCCCTCTATGGCCACGTCATGGCACAGGTG
TTCTCCTCAGCGGGCGATCCGGCAAAGGCGCAGGCGGCCTCCCTCATTCG
GGACACTGGGAGGCAGCTTCTCGCCACGGAAGTACAGTCCGCCCAGATTT
ACTGGCAAGTCGCCAACGCAGGCACCCCCAACTTGCCTAGAGTGTATCCG
GAGGCCTACCGGCCGCACGTCGTCGGGATGCTTTGGAGCACGCTGGCGCA
GATGCAGACCTGGTTTGGTGCGGAGGCCTGGAAAGTTTACGGGATCCAGG
CAAGCTGCCTATCCGTCTCTTTGTATCTGCATATGCTACCAATCACCGGA
GTTAGCGAGCAGCTGCTGGACCCGCGATGGGTGCAGCAGATGCTGCCGTC
GTTCGAGGATTCTTGTCTGCACGACAGCAACCCCATAAAGGCCTGTGTCG
TGGAGGGGTGGTCGATGCTCGTGCACGCAGGACAAGCGATCACCGGCAGG
TGGGAAGATGGTAGAGATGGGATAATGGCCCTCCCAGACGACGTGTTCGA
GACGGCGGGCGGAAATGGTCACAGTCGAACGAGCATGCTGTGGTTTGTGG
CCAATCGCCCTCCCCCTCCGCCACCCTCGGGTGATGACGACAGTGATTAA
CGTTTGCGATGTCAGGGATTCCTCACCTTCCCCGACAACAAGCGTTTCTC
CTCATCGGAGTAGAAGCCTGACTGGGTTTACTGTTGTCAATTTTGTTTTG
CGCCCGGATTTTTGACTGCGTAGAGTCGATGAAACGTGGCATGCGGTCAG
CTTGTGGATTTTTTGTTTTGGACGTATGATTGTACGTGAATTGAAGGTTG
CAGCGAGGCGTGTTGCAACGGTTTGTGTGTAGAGCAGATGCTTGATGAAG
GTTTCGGCTACAAATCTACAGCTACACACCGCGATTGCGGGCGTTTATGG
CGCTTGGTTGTTGGACTTGGTGTTGAATTTCAGTGATTGACAGGAACGGG
GATAACAGATGACCGAGTTTGGTGCAATAGTGCATGACTCGGGTTCGAGA
GGGCTCACAGACAGGCAGATAGGCTGCCAGGCAAGATATTGAGATATGAC
ATAGAGATATACGAAAGA back to topprotein sequence of EsuBft1833_5a-0001 >EsuBft1833_5 ID=EsuBft1833_5|Name=EsuBft1833_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=449bp
MLAKMGRIALIAEEMGRPEDARMVAARLAEASQVWLNGTAGSPLLYDFRW
GGVVTCGCAYEKDHGCMNGIGPYQCPGLSDPGMNFGLGFYNDHHFHFGYH
IFAAAIVSKFFPDWGIKHHEAVTLLIRDIANPSSSDPFFPVFRHKEALSF
IALLSEFVARVARYNSLNQPLVLRQHWSCTTPQRILREPCHEYQALPRRC
QDWFLGSSWALGIPTLGGVPYMNGRNQESSSEAVNAYYAVALYGHVMAQV
FSSAGDPAKAQAASLIRDTGRQLLATEVQSAQIYWQVANAGTPNLPRVYP
EAYRPHVVGMLWSTLAQMQTWFGAEAWKVYGIQASCLSVSLYLHMLPITG
VSEQLLDPRWVQQMLPSFEDSCLHDSNPIKACVVEGWSMLVHAGQAITGR
WEDGRDGIMALPDDVFETAGGNGHSRTSMLWFVANRPPPPPPSGDDDSD back to topmRNA from alignment at Scaffold_550:2147..6932- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1833_5a-0001 ID=EsuBft1833_5a-0001|Name=EsuBft1833_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4786bp|location=Sequence derived from alignment at Scaffold_550:2147..6932- (Ectocarpus subulatus male Bft15b)
ATGTTGGCCAAGATGGGGCGAATCGCGCTCATCGCCGAGGAAATGGGGCG
CCCGGAAGACGCCAGAATGGTGGCGGCTCGCCTGGCCGAAGCATCTCAGG
TACAGAGTGTGGGAAGGCACAGCAGTACCCCAGTTTTGCTTCTTTGGGTC
CGACCCTTTTCCGGAGAGTTTTGGTACGATTTATTTCGTGTGACACAACA
TTGATAACACCGTCGACATATTTTCCACGCACTAAACGACCCCCCTTGGC
ACGACAACCACTTCTTGCTTGGCTTTGTTGCTGTAACGCTTGTTATTGCG
AAGACAACAACAATGCCTACCTGGTAAAACAATGCCCTGAACGACAGGTT
TGGCTGAACGGTACGGCGGGGTCCCCATTGCTCTACGACTTCCGGTGGGG
CGGCGTGGTCACTTGCGGCTGCGCGTATGAAAAGGACCACGGTTGCATGA
ATGGTATCGGCCCATATCAGTGCCCAGGCCTTAGCGACCCCGGGATGAAC
TTCGGCCTTGGCTTTTACAACGATCATCACTTCCATTTCGGTGAGTGGGA
CGGGCGGCGCACACAGCAGCAAACAATACCCTCTGAGACATATGCACGTG
TTGAGAAGGTGACGCTTACCTTTTGCGTATTCCTACTGGACGCCCGCCGT
ATCGACGCTGAGACACCTCCAGGCGACAATTTTATTTTATTTTATTGGGA
ACAGCTCGAGATAGGTGAGGAGTTGTGCGACGAACTCCAAAGTTGTATCC
CTGGCGCGACCACCTTGCCTGAATCCCGCTAGTCGCCTTACTCTCGTGTG
TTGCATGAAGTGACGCCTGCAGTTGAGGTGGCTCGTTCGCCTGTTTGGTA
GTGCGCTTTAACAGAACTCACCCGGCAATTGCGCAACTCTTGAGTCTGAA
AGGTCAATGTCAGAATCACCACTCTGCGCATTTTCTCGTGCCTGCTTGCA
TGAGTTGTCATTGTCCTTCTTTTCCAAGCAGTATACCGTCGCGAGGGGCA
GCTAGACGTAATAAGTAGTATTCCCCGACCAGTTTGCGTCGTCGCCCCGT
CCTTGCGAGACAGACCAACGTCGTGTTTTAACCGCGGCTGCTATTTCTGT
TCTACGCATAAATGCGGCGTATTCTCGTCCGAAGAGGCTCACGGCTCGTT
CGTTTTATTTTTTCCCGCTCTACCTCTCTCTAAAACAACAGGTTACCACA
TCTTTGCGGCGGCGATCGTCTCCAAGTTTTTCCCGGATTGGGGAATCAAG
CACCACGAGGCCGTGACGCTGCTCATCAGAGACATAGCAAACCCGTCCAG
CTCGGACCCTTTCTTCCCGGTGTTCCGACACAAGGTATACAGGGCAATGT
CTGCACACCTACCGCATGTTCGATCCACGAGCGGCAAAAATGACCGCAAC
TCTACTTTCAAGTGTTTGGGACGTGTCAGCGGCATCCAAATGAAATATGG
CACCACTGCTGCTGCCCTTGTGCTCCAAGCATCCCAGGCAACCTTTTTGT
ACCTGCCCGTGATGGGCGTTGGCGAATCCAGTACAGTTAAAATTGAGCCC
ACCATCGTTCTGAGGTATTCTTCTGCCAGACCATGTACCGTGTAGGAGGC
ACTGTCGTTCATTGCCCTGCTTTCTGAGTTTGTTGCTAGAGTCGCCAGGT
ACAACTCGCTAAACCAACCTCTGGTTTTGAGACAGCATTGGTCATGTACA
ACCCCGCAACGTATTTTAAGAGAACCTTGCCATGAATACCAAGCACTTCC
GCGGCGGTGCCAGGATTGGTTCTTGGGGTCATCGTGGGCCCTTGGCATCC
CCACCCTGGGGGGGGTCCCGTACATGAACGGTCGCAACCAGGAAAGCAGC
AGCGAGGCCGTCAATGCGTACTACGCCGTCGCCCTCTATGGCCACGTCAT
GGCACAGGTAGATAACCGATCTCCGTCTCCACGTCTCTCGCTGCTACCAT
TGTTGTTGTTGTTGTCGTCGTTGGTGGAACTGGTTTCGTTGTTGGTGCTG
TAGGTGTCCGTTATGAAACGTTGGGACTCTGCGACCCTATCGCTACTCGT
GCGACCCAACCGGTTCGACATGGCCTCCGCCAAACGGTTGAAATTGCGTG
GTGCGGGAGAAGTACACGATGGTAGTATTAAGCGTTCTGGAACCGACATG
TGTTACGCGACGTCGCAGTGTCGAACAGTATCACCACCGCCTGGTTAACA
CTGTGAACCCAACAACACTTTGTGGTGCATGGTTTCTCCCTATATTAGGC
GGTATTTTCGAAGTACAAAGGCTGGTCACCCTGCGCAAGACCGGTGAAGG
CGCGTGACACAGATGGAATATCCAATTCGTCTCGTACTCTGAATATTATG
GGGTGCCCGGTATGAGGCCAGCTACATCCAATCCCTCGGAACGAGTTGGC
CTTATAAATGACCACTACTCTACGTGCCTCCCTCTAGAACAATATGCGGC
CTGTTGTTCTGTCCGTGCTGGGTTCTCCAACCTCATGCGGAAGCAGCCCT
GTTGTCTTCCGTATCCAAGATTTTCTCTTTGTCGTTACGACCTTCGTTTT
TCTGCATGTGATTCTTGCCGGTGACCGTCTTGTCCTAGGTGTTCTCCTCA
GCGGGCGATCCGGCAAAGGCGCAGGCGGCCTCCCTCATTCGGGACACTGG
GAGGCAGCTTCTCGCCACGGAAGTACAGGTGAGAGAAGAAGGATGACGAG
GAGGCATCGGAATGGCGACGGTTCATGATCGGGGGATCTTTATTGATGGT
TGTTCACCGAAATGCAACAAGAACTCGGGTACACAAAATGGGAGCGAATG
ATGAAGAGGCGGCGGCGCGGTCAGAGGGTGCTACAAGCAGGAGAGACCCG
GACGATGAGAGAGATAAGTAGAAAATGAATGCTTCGACTGAGATATCCAT
CAACTCGGGGGCGACTTCGCAAGCAAGTGTAGTACATCTCCAAATTCGTT
TGACATGCATACGGATGGACACTGTGGTAGAGGGTCGTCTTGCGGGAGTG
CAGCGGCGGCGTAACCCCTCTCCGCGATCCTCCCACCACAGCTCTTTTTC
CCGGTTGCCCTACCCCATGATTGCTGGGCATTTTGTGTCTGCACGGTGGA
TCACGCAGTCCGCCCAGATTTACTGGCAAGTCGCCAACGCAGGCACCCCC
AACTTGCCTAGAGTGTATCCGGAGGCCTACCGGCCGCACGTCGTCGGGAT
GCTTTGGAGCACGCTGGCGCAGATGCAGACCTGGTTTGGTGCGGAGGCCT
GGAAAGTTTACGGGATCCAGGCAAGCTGCCTATCCGTCTCTTTGTATCTG
CATGTTCAGTTCCATTCACTTCACCAACAGCGACACAGGTTGCCTCCAAG
AAAGTGACCCGGTTGTCTCCGTTGCCGCGAGCCTCCCCTTTTGTCGGCGG
CGTTTTGGATGCCTCCCTAGCATCGGCTGTCGCGTTTTAGTTGTGGGTGC
TAGACACCCTTTGATCGTGGCATGCCCTTCTTCCTCGCCCTTGCACCTGT
TGCGCAACAGATGCTACCAATCACCGGAGTTAGCGAGCAGCTGCTGGACC
CGCGATGGGTGCAGCAGATGCTGCCGTCGTTCGAGGATTCTTGTCTGCAC
GACAGCAACCCCATAAAGGCCTGTGTCGTGGAGGGGTGGTCGATGCTCGT
GCACGCAGGACAAGCGATCACCGGCAGGTGCGGCGATATGTCTGTTGCTG
CTGATGTTACCGTTGCCGCTATTTTGCAAGTGGTGTGTGCTGGCAGCGTG
TTCGAAGAGCTAGACAGGCATGCAAGGCTGTGAGGTTTTGTCGTCTTCGC
TCCCTTGCATGGAGCGCAGTTGGCATGCGCCGTGTCGTGTCTAGCGATTG
CGTAGTTTCCATGGTCCTCGCCACGCTGGCCCAGTACCTCTCTTCTATTT
CTTTGTTGCGTGCCGCCAAAGGGTCAACATGCGTGACACCCCAAGGCGGT
TACTTGGCTCTATTACGGTGGGGTGTCATGCGTTCATGAACGCTGGCATG
GCACTGATGACAGTTAACTGGAACATGGTTCGCCCAACAGTAACGCAGTG
AAGGGTTCTCCCAATTCCGAGAGAGAATATTTCTATTATATCCATAATCT
GATTTATACATCAAATCACCCTTCACGACCCCCCTTCGTCCTCGAATTCG
AAACTCGTGCTTCCAAGGTGGGAAGATGGTAGAGATGGGATAATGGCCCT
CCCAGACGACGTGTTCGAGACGGCGGGCGGAAATGGTCACAGTCGAACGA
GCATGCTGTGGTTTGTGGCCAATCGCCCTCCCCCTCCGCCACCCTCGGGT
GATGACGACAGTGATTAACGTTTGCGATGTCAGGGATTCCTCACCTTCCC
CGACAACAAGCGTTTCTCCTCATCGGAGTAGAAGCCTGACTGGGTTTACT
GTTGTCAATTTTGTTTTGCGCCCGGATTTTTGACTGCGTAGAGTCGATGA
AACGTGGCATGCGGTCAGCTTGTGGATTTTTTGTTTTGGACGTATGATTG
TACGTGAATTGAAGGTTGCAGCGAGGCGTGTTGCAACGGTTTGTGTGTAG
AGCAGATGCTTGATGAAGGTTTCGGCTACAAATCTACAGCTACACACCGC
GATTGCGGGCGTTTATGGCGCTTGGTTGTTGGACTTGGTGTTGAATTTCA
GTGATTGACAGGAACGGGGATAACAGATGACCGAGTTTGGTGCAATAGTG
CATGACTCGGGTTCGAGAGGGCTCACAGACAGGCAGATAGGCTGCCAGGC
AAGATATTGAGATATGACATAGAGATATACGAAAGA back to topCoding sequence (CDS) from alignment at Scaffold_550:2147..6932- >EsuBft1833_5a-0001 ID=EsuBft1833_5a-0001|Name=EsuBft1833_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1350bp|location=Sequence derived from alignment at Scaffold_550:2147..6932- (Ectocarpus subulatus male Bft15b)
ATGTTGGCCAAGATGGGGCGAATCGCGCTCATCGCCGAGGAAATGGGGCG
CCCGGAAGACGCCAGAATGGTGGCGGCTCGCCTGGCCGAAGCATCTCAGG
TTTGGCTGAACGGTACGGCGGGGTCCCCATTGCTCTACGACTTCCGGTGG
GGCGGCGTGGTCACTTGCGGCTGCGCGTATGAAAAGGACCACGGTTGCAT
GAATGGTATCGGCCCATATCAGTGCCCAGGCCTTAGCGACCCCGGGATGA
ACTTCGGCCTTGGCTTTTACAACGATCATCACTTCCATTTCGGTTACCAC
ATCTTTGCGGCGGCGATCGTCTCCAAGTTTTTCCCGGATTGGGGAATCAA
GCACCACGAGGCCGTGACGCTGCTCATCAGAGACATAGCAAACCCGTCCA
GCTCGGACCCTTTCTTCCCGGTGTTCCGACACAAGGAGGCACTGTCGTTC
ATTGCCCTGCTTTCTGAGTTTGTTGCTAGAGTCGCCAGGTACAACTCGCT
AAACCAACCTCTGGTTTTGAGACAGCATTGGTCATGTACAACCCCGCAAC
GTATTTTAAGAGAACCTTGCCATGAATACCAAGCACTTCCGCGGCGGTGC
CAGGATTGGTTCTTGGGGTCATCGTGGGCCCTTGGCATCCCCACCCTGGG
GGGGGTCCCGTACATGAACGGTCGCAACCAGGAAAGCAGCAGCGAGGCCG
TCAATGCGTACTACGCCGTCGCCCTCTATGGCCACGTCATGGCACAGGTG
TTCTCCTCAGCGGGCGATCCGGCAAAGGCGCAGGCGGCCTCCCTCATTCG
GGACACTGGGAGGCAGCTTCTCGCCACGGAAGTACAGTCCGCCCAGATTT
ACTGGCAAGTCGCCAACGCAGGCACCCCCAACTTGCCTAGAGTGTATCCG
GAGGCCTACCGGCCGCACGTCGTCGGGATGCTTTGGAGCACGCTGGCGCA
GATGCAGACCTGGTTTGGTGCGGAGGCCTGGAAAGTTTACGGGATCCAGG
CAAGCTGCCTATCCGTCTCTTTGTATCTGCATATGCTACCAATCACCGGA
GTTAGCGAGCAGCTGCTGGACCCGCGATGGGTGCAGCAGATGCTGCCGTC
GTTCGAGGATTCTTGTCTGCACGACAGCAACCCCATAAAGGCCTGTGTCG
TGGAGGGGTGGTCGATGCTCGTGCACGCAGGACAAGCGATCACCGGCAGG
TGGGAAGATGGTAGAGATGGGATAATGGCCCTCCCAGACGACGTGTTCGA
GACGGCGGGCGGAAATGGTCACAGTCGAACGAGCATGCTGTGGTTTGTGG
CCAATCGCCCTCCCCCTCCGCCACCCTCGGGTGATGACGACAGTGATTAA back to top
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