EsuBft1813_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1813_4a-0001
Unique NameEsuBft1813_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:161493..162451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft1813_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length95
Hectar predicted targeting categoryother localisation
Evalue1.1e-15
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionPlant transposon protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1813_4aEsuBft1813_4aEctocarpus subulatus male Bft15bgeneScaffold_647 161493..162451 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1813_4a-0001-exonEsuBft1813_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 161493..162451 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1813_4a-0001-exonagat-three_prime_utr-6501Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 161493..162093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1813_4a-0001-cdsEsuBft1813_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 162094..162447 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1813_4a-0001-exonagat-five_prime_utr-4266Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_647 162448..162451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1813_4a-0001EsuBft1813_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 162094..162447 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1813_4a-0001 ID=EsuBft1813_4a-0001|Name=EsuBft1813_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=959bp|location=Sequence derived from alignment at Scaffold_647:161493..162451- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGCATGCGCAAGGACATCGAGTGCTGCTATGGAACAGTGAAAGGACGCC
TTCGCCTGTTCAAGGCAGGCATTCTCTATAAGACCCGCGACAGCATCGAC
AACGCATGTTTCACGGCGTGCATCCTCCACAACATGCTTCACCACTACGA
CAAACTGGACGTCATGACGGAGGCGACCGGCTGGCAGGGATCGGCCGGGC
CGTTGGGGGGTGGCGAGCCAGATGTAGGCACGGGGGACGACAACGACAGC
GAGACACCATCCCCAGGGTTCGAAGAGTTTCGCGCGAAGCTCGTTACCCA
ATTCTCTGTAGCATGGACCAGGAAGGAGGTTGTGTGGTTTCAGAGGGCAG
CGGTATGAGAGGCGTAGACAGCCTCCAGATTACGTTTTACCTGTTTTTTG
TTCTCTTATCCCTGTCGTCAGCATAGGGAAGTAGGACGACTGCTTCCTGT
GCAAGTTTGTCGTCGCCTCGATTGCGTAACTATTGCTCGTGTATTTTTAA
GTTCGACATATTATCGGTAGGGAGGAGTAGATTGGTTTGCCTGACCAGCG
AGAACCCGATACGAACACCCCCCCCCGCAATATGAGGGTACCAAGTAGAA
TCATGGGGTGTATCCTGCTGTTGGTGGTGGTGTTGACTTGTTTTTCTTGG
ACTTCTCCTGTTTTGCTTTTGCCTCACATAGCCTGGAGAGAGGATCAGAG
GACTCCATGCTGTATGTTTTTGCTTACCCCTAGTGTCAGCAAGCATGCCG
TTAGTCTGTTGAGTACGCCGAGCGATCTCGCAGAGTGTTGGACCAGTACG
GATGGAGAAACTGAGTAGAGAGATCGCAACGGGGATCAATGTGAAGATAA
CAACAACAACGTCATACCCCTGACACTTGGCATGTATGTATGTGTCCCTC
GACGTTTGTCGAGATGGTTGTCACCGCGAGCGGTTGTAGCTGAGGGGACA
GCGGTTCTT
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protein sequence of EsuBft1813_4a-0001

>EsuBft1813_4 ID=EsuBft1813_4|Name=EsuBft1813_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=117bp
MRKDIECCYGTVKGRLRLFKAGILYKTRDSIDNACFTACILHNMLHHYDK
LDVMTEATGWQGSAGPLGGGEPDVGTGDDNDSETPSPGFEEFRAKLVTQF
SVAWTRKEVVWFQRAAV
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mRNA from alignment at Scaffold_647:161493..162451-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1813_4a-0001 ID=EsuBft1813_4a-0001|Name=EsuBft1813_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=959bp|location=Sequence derived from alignment at Scaffold_647:161493..162451- (Ectocarpus subulatus male Bft15b)
GAGCATGCGCAAGGACATCGAGTGCTGCTATGGAACAGTGAAAGGACGCC
TTCGCCTGTTCAAGGCAGGCATTCTCTATAAGACCCGCGACAGCATCGAC
AACGCATGTTTCACGGCGTGCATCCTCCACAACATGCTTCACCACTACGA
CAAACTGGACGTCATGACGGAGGCGACCGGCTGGCAGGGATCGGCCGGGC
CGTTGGGGGGTGGCGAGCCAGATGTAGGCACGGGGGACGACAACGACAGC
GAGACACCATCCCCAGGGTTCGAAGAGTTTCGCGCGAAGCTCGTTACCCA
ATTCTCTGTAGCATGGACCAGGAAGGAGGTTGTGTGGTTTCAGAGGGCAG
CGGTATGAGAGGCGTAGACAGCCTCCAGATTACGTTTTACCTGTTTTTTG
TTCTCTTATCCCTGTCGTCAGCATAGGGAAGTAGGACGACTGCTTCCTGT
GCAAGTTTGTCGTCGCCTCGATTGCGTAACTATTGCTCGTGTATTTTTAA
GTTCGACATATTATCGGTAGGGAGGAGTAGATTGGTTTGCCTGACCAGCG
AGAACCCGATACGAACACCCCCCCCCGCAATATGAGGGTACCAAGTAGAA
TCATGGGGTGTATCCTGCTGTTGGTGGTGGTGTTGACTTGTTTTTCTTGG
ACTTCTCCTGTTTTGCTTTTGCCTCACATAGCCTGGAGAGAGGATCAGAG
GACTCCATGCTGTATGTTTTTGCTTACCCCTAGTGTCAGCAAGCATGCCG
TTAGTCTGTTGAGTACGCCGAGCGATCTCGCAGAGTGTTGGACCAGTACG
GATGGAGAAACTGAGTAGAGAGATCGCAACGGGGATCAATGTGAAGATAA
CAACAACAACGTCATACCCCTGACACTTGGCATGTATGTATGTGTCCCTC
GACGTTTGTCGAGATGGTTGTCACCGCGAGCGGTTGTAGCTGAGGGGACA
GCGGTTCTT
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Coding sequence (CDS) from alignment at Scaffold_647:161493..162451-

>EsuBft1813_4a-0001 ID=EsuBft1813_4a-0001|Name=EsuBft1813_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=354bp|location=Sequence derived from alignment at Scaffold_647:161493..162451- (Ectocarpus subulatus male Bft15b)
ATGCGCAAGGACATCGAGTGCTGCTATGGAACAGTGAAAGGACGCCTTCG
CCTGTTCAAGGCAGGCATTCTCTATAAGACCCGCGACAGCATCGACAACG
CATGTTTCACGGCGTGCATCCTCCACAACATGCTTCACCACTACGACAAA
CTGGACGTCATGACGGAGGCGACCGGCTGGCAGGGATCGGCCGGGCCGTT
GGGGGGTGGCGAGCCAGATGTAGGCACGGGGGACGACAACGACAGCGAGA
CACCATCCCCAGGGTTCGAAGAGTTTCGCGCGAAGCTCGTTACCCAATTC
TCTGTAGCATGGACCAGGAAGGAGGTTGTGTGGTTTCAGAGGGCAGCGGT
ATGA
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