EsuBft1811_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1811_7a-0001
Unique NameEsuBft1811_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:15020..15839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1811_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length59
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1811_7aEsuBft1811_7aEctocarpus subulatus male Bft15bgeneScaffold_385 15020..15839 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1811_7a-0001-exonEsuBft1811_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 15020..15543 -
EsuBft1811_7a-0001-exonagat-exon-22978Ectocarpus subulatus male Bft15bexonScaffold_385 15774..15839 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1811_7a-0001-exonagat-three_prime_utr-6492Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_385 15020..15510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1811_7a-0001-cdsEsuBft1811_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 15511..15543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1811_7a-0001EsuBft1811_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 15511..15839 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1811_7a-0001 ID=EsuBft1811_7a-0001|Name=EsuBft1811_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=590bp|location=Sequence derived from alignment at Scaffold_385:15020..15839- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCAGAACAGCTTGCTGTCGCGCCGGTCTTCTGAGTTGCACAGGGC
ACCCAGAGGCAGCCAGGTAGGCGGAGAACTGCCTACAGTAGTAGACTAAT
CGCTGTACGTATTCAATCAACTTCCGGCAAACGGGCAAGAGGAAATTGCT
TCGTTTGTTGTTCGAGTCCTACCCGAAGATTCAAGAAGGAAAGCGGAAGT
GAATAATATGTGCACCCATCCGCAAACGAAACTACGTAGTCTCGGGTTTG
GGTGGGGGTAGCTAGGGGGGCTGGGGGTTGGCTGTGGGCGTGGGGTTTAG
GAGGCAGTGCGGACATGCGCGGGGGGATACTGTATTATAGTGATATGGGT
TGATAAAGTTCTGCTGGATTTAGTTGTTCTATTCTTTCTTGGAGTCTCCC
CGTGGTCCCCCTCGTTCGTTCGTCATTCCGACATCAGTTCGCAACACCTC
CCACCTACCCGACCTATCTACAGCGTCGCAAAAAACTTGGCTACTGCAGT
TAGTCCTTGGGGGACTGTACAGTAAAGCACATTCTGCACGGGTGGGCAAA
CAATTGCGCGGTGGTGTTGTTGCTCTTCTTGTACACTGGT
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protein sequence of EsuBft1811_7a-0001

>EsuBft1811_7 ID=EsuBft1811_7|Name=EsuBft1811_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=32bp
MPQNSLLSRRSSELHRAPRGSQVGGELPTVVD
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mRNA from alignment at Scaffold_385:15020..15839-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1811_7a-0001 ID=EsuBft1811_7a-0001|Name=EsuBft1811_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=820bp|location=Sequence derived from alignment at Scaffold_385:15020..15839- (Ectocarpus subulatus male Bft15b)
ATGCCCCAGAACAGCTTGCTGTCGCGCCGGTCTTCTGAGTTGCACAGGGC
ACCCAGAGGCAGCCAGGTTCTTCCGGAAACGAACGATTCTGATTCTCCAG
TCAACGCTGTATCTACAACACCAGGAAGGTCAATAACTCCTGCAGCAGTG
GGGACGCCAGAGACACCGCGAACAGGCAAGACGAAGATCTCGTGGGGACA
GAGGTCACGATTGCCTCCTCTGACGCGGATTGCCTCCTCTGACGCCACCG
GTGGTTCGGTTCAAAAACAGTCAAGTACCGTAGACAAACCCTGTAGGTAG
GCGGAGAACTGCCTACAGTAGTAGACTAATCGCTGTACGTATTCAATCAA
CTTCCGGCAAACGGGCAAGAGGAAATTGCTTCGTTTGTTGTTCGAGTCCT
ACCCGAAGATTCAAGAAGGAAAGCGGAAGTGAATAATATGTGCACCCATC
CGCAAACGAAACTACGTAGTCTCGGGTTTGGGTGGGGGTAGCTAGGGGGG
CTGGGGGTTGGCTGTGGGCGTGGGGTTTAGGAGGCAGTGCGGACATGCGC
GGGGGGATACTGTATTATAGTGATATGGGTTGATAAAGTTCTGCTGGATT
TAGTTGTTCTATTCTTTCTTGGAGTCTCCCCGTGGTCCCCCTCGTTCGTT
CGTCATTCCGACATCAGTTCGCAACACCTCCCACCTACCCGACCTATCTA
CAGCGTCGCAAAAAACTTGGCTACTGCAGTTAGTCCTTGGGGGACTGTAC
AGTAAAGCACATTCTGCACGGGTGGGCAAACAATTGCGCGGTGGTGTTGT
TGCTCTTCTTGTACACTGGT
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Coding sequence (CDS) from alignment at Scaffold_385:15020..15839-

>EsuBft1811_7a-0001 ID=EsuBft1811_7a-0001|Name=EsuBft1811_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=99bp|location=Sequence derived from alignment at Scaffold_385:15020..15839- (Ectocarpus subulatus male Bft15b)
ATGCCCCAGAACAGCTTGCTGTCGCGCCGGTCTTCTGAGTTGCACAGGGC
ACCCAGAGGCAGCCAGGTAGGCGGAGAACTGCCTACAGTAGTAGACTAA
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